Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000960.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

60177 .. 61118

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgcgacttctcaacgatcttttaaatatgcatgatggttttgatgatgaagagtggcagaaggaatgtaaaaagcgcatgatcgatacatttccacgtgaggatccatttagcattttagttccagaaggatttgacattgataagcatgagggacttcttcggccaccgcttgaagtagatgacgctctattgagggtagactttgtaagagaggttgatgcactgctacaagaggttcgggctgagcaaagcgaagtacaaattacacaagggcttgatcctgaatccattgcaagtagattgaagcagcaggagaagcaacgggccatacggctggtagaagctatactaaacctggccattaatttaaaatggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009416 GO:0009501 GO:0009507 GO:0009509 GO:0009513 GO:0009532 GO:0009536 GO:0009537 GO:0009570 GO:0009628 GO:0009653 GO:0009657 GO:0009658 GO:0009965 GO:0009987 GO:0010016 GO:0010239 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0019843 GO:0022613 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:0104004 GO:1901360 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.74

Weight (kDa)

4.65

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	3 cut(s)	98, 111, 275
AcoI	YGGCCR	2 cut(s)	164, 360
AcvI	CACGTG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	176, 307
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
AlwI	GGATC	3 cut(s)	98, 111, 275
AoxI	GGCC	3 cut(s)	164, 327, 360
ApeKI	GCWGC	1 cut(s)	310
AseI	ATTAAT	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	327
BalI	TGGCCA	1 cut(s)	362
BamHI	GGATCC	1 cut(s)	103
BbrPI	CACGTG	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	350
BciT130I	CCWGG	1 cut(s)	359
BisI	GCNGC	1 cut(s)	311
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	312
Bme1390I	CCNGG	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	327
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	211
Bpu1102I	GCTNAGC	1 cut(s)	246
Bsa29I	ATCGAT	1 cut(s)	84
BsaAI	YACGTR	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	359
BseCI	ATCGAT	1 cut(s)	84
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	322
BshFI	GGCC	3 cut(s)	166, 329, 362
BshVI	ATCGAT	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	168
BsnI	GGCC	3 cut(s)	166, 329, 362
Bsp143I	GATC	4 cut(s)	16, 81, 103, 280
Bsp1720I	GCTNAGC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	3 cut(s)	166, 329, 362
BspCNI	CTCAG	1 cut(s)	238
BspDI	ATCGAT	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	105
BspPI	GGATC	3 cut(s)	98, 111, 275
BsrDI	GCAATG	1 cut(s)	291
BssMI	GATC	4 cut(s)	16, 81, 103, 280
Bst2UI	CCWGG	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	4 cut(s)	19, 84, 106, 283
BstMBI	GATC	4 cut(s)	16, 81, 103, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	103
Bsu15I	ATCGAT	1 cut(s)	84
BsuRI	GGCC	3 cut(s)	166, 329, 362
BsuTUI	ATCGAT	1 cut(s)	84
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	224
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	327
ClaI	ATCGAT	1 cut(s)	84
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	3 cut(s)	32, 79, 149
CviJI	RGCY	7 cut(s)	166, 245, 277, 329, 337, 347, 362
CviKI_1	RGCY	7 cut(s)	166, 245, 277, 329, 337, 347, 362
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	4 cut(s)	18, 83, 105, 282
DpnII	GATC	4 cut(s)	16, 81, 103, 280
DraI	TTTAAA	2 cut(s)	24, 372
EaeI	YGGCCR	2 cut(s)	164, 360
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco72I	CACGTG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	357
EcoT22I	ATGCAT	1 cut(s)	33
FaeI	CATG	3 cut(s)	35, 82, 152
FaiI	YATR	6 cut(s)	29, 33, 80, 150, 332, 350
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	3 cut(s)	31, 78, 148
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	311
Fsp4HI	GCNGC	1 cut(s)	311
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	1 cut(s)	311
HaeIII	GGCC	3 cut(s)	166, 329, 362
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	3 cut(s)	35, 82, 152
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	287
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	125, 284
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	55, 122
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	3 cut(s)	31, 224, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	3 cut(s)	35, 82, 152
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	4 cut(s)	16, 81, 103, 280
LpnPI	CCDG	6 cut(s)	138, 297, 299, 323, 344, 371
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	1 cut(s)	211
MaeII	ACGT	1 cut(s)	97
MalI	GATC	4 cut(s)	18, 83, 105, 282
MboI	GATC	4 cut(s)	16, 81, 103, 280
MboII	GAAGA	2 cut(s)	62, 152
MflI	RGATCY	1 cut(s)	103
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	2 cut(s)	264, 367
MluNI	TGGCCA	1 cut(s)	362
MnlI	CCTC	5 cut(s)	94, 145, 189, 208, 229
Mox20I	TGGCCA	1 cut(s)	362
Mph1103I	ATGCAT	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	3 cut(s)	23, 366, 371
Msp20I	TGGCCA	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	319
NdeII	GATC	4 cut(s)	16, 81, 103, 280
NlaIII	CATG	3 cut(s)	35, 82, 152
NlaIV	GGNNCC	1 cut(s)	105
NsiI	ATGCAT	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	312
PmaCI	CACGTG	1 cut(s)	98
PmlI	CACGTG	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	98
PshBI	ATTAAT	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	357
PspCI	CACGTG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SaqAI	TTAA	3 cut(s)	23, 366, 371
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	4 cut(s)	16, 81, 103, 280
Sau96I	GGNCC	1 cut(s)	327
ScrFI	CCNGG	1 cut(s)	359
SetI	ASST	5 cut(s)	100, 219, 240, 349, 360
SfaNI	GCATC	1 cut(s)	211
Sse9I	AATT	2 cut(s)	264, 367
SsiI	CCGC	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	357
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	84
TasI	AATT	2 cut(s)	264, 367
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	3 cut(s)	23, 366, 371
Tru9I	TTAA	3 cut(s)	23, 366, 371
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	231
VspI	ATTAAT	1 cut(s)	366
XmiI	GTMKAC	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.