Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000962.1

Orthogroup ID

OG0031109

Physical Location & Seq

Genomic Coordinates Reverse (-)

156683 .. 159312

Gene Structure 2630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atggtctcggaggagggagacgaagctgctggaggtggtccggcgtcgtttggtggccggagggcggagaaccaggccggagcctccgtgctctgttttcggccggctcggggaaagagaaagagagaaatgcgccgggtttccaaaatgggaaaccgaaactcggcccatcaggcctccacccacagctacagtgatggccttgatccgagacaggcccaagtacggcccactcgtgtcacggcttatcccttccgtgatttatggcagtcaaatctgctttcggctaaagctgtctgccacagcgcctcgagattccctcggccaaccagtcaccggtggggtcctacaccagctcaactgagaatcctccaggagctttactacgacaaggggcttaaaaacccaaatccagagcagattcaagggatctgtctccatctgaagccgtatgggcagatcgagaacaaaaacgttttctattggttccagaacctcaaggctcgtgagagtcagaagttgaaggaaatccggaacgttcgggttggtggatccctcgatctcaattttggatccacaagttctactgaaggtggcagatccatcgatctcaacttcggttccacagattccactggtgatgatggatcgatcgatctaacccttgggttacgatcactcatggaacgacgaggaggagatcaccaggaggtcgaaactcttcctctgttccctgagcacggtgaaaacatccttggtaatccgaaggctacatcagaggaaggtagcgcatttggttactattccggtggttcaggcggttacaacagtggttctcctgtttctcttgagcttagcctcaacccatccggagccgctgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

294

Amino Acids

32.05

Weight (kDa)

8.92

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	112 - 170	3.5e-08	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031109)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000962.1_g000038 Rmu_sc0002536.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	531, 869
AciI	CCGC	3 cut(s)	65, 819, 876
AclI	AACGTT	2 cut(s)	474, 537
AclWI	GGATC	8 cut(s)	200, 437, 546, 559, 567, 580, 594, 655
AcoI	YGGCCR	3 cut(s)	55, 101, 323
AcuI	CTGAAG	2 cut(s)	464, 609
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	6 cut(s)	64, 110, 163, 225, 336, 740
AgeI	ACCGGT	1 cut(s)	336
AgsI	TTSAA	2 cut(s)	425, 523
AjnI	CCWGG	3 cut(s)	72, 372, 705
AjuI	GAANNNNNNNTTGG	2 cut(s)	738, 770
AluBI	AGCT	6 cut(s)	26, 189, 293, 356, 379, 853
AluI	AGCT	6 cut(s)	26, 189, 293, 356, 379, 853
Alw21I	GWGCWC	2 cut(s)	93, 741
Alw26I	GTCTC	4 cut(s)	10, 12, 205, 440
AlwI	GGATC	8 cut(s)	200, 437, 546, 559, 567, 580, 594, 655
Ama87I	CYCGRG	2 cut(s)	108, 310
Aor13HI	TCCGGA	2 cut(s)	531, 869
AoxI	GGCC	9 cut(s)	55, 75, 101, 165, 174, 199, 216, 227, 323
ApeKI	GCWGC	1 cut(s)	26
AsiGI	ACCGGT	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	720
AspLEI	GCGC	3 cut(s)	135, 308, 791
AspS9I	GGNCC	5 cut(s)	38, 166, 217, 228, 344
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	4 cut(s)	326, 650, 695, 755
AvaI	CYCGRG	2 cut(s)	108, 310
AvaII	GGWCC	2 cut(s)	38, 344
BamHI	GGATCC	2 cut(s)	551, 572
BauI	CACGAG	2 cut(s)	234, 504
Bbv12I	GWGCWC	2 cut(s)	93, 741
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	6 cut(s)	177, 191, 447, 611, 638, 874
BceAI	ACGGC	3 cut(s)	242, 258, 433
BcgI	CGANNNNNNTGC	2 cut(s)	586, 620
BciT130I	CCWGG	3 cut(s)	74, 374, 707
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	4 cut(s)	10, 12, 205, 440
BfmI	CTRYAG	1 cut(s)	190
BfoI	RGCGCY	1 cut(s)	309
BglI	GCCNNNNNGGC	2 cut(s)	173, 454
BisI	GCNGC	2 cut(s)	27, 876
BlpI	GCTNAGC	1 cut(s)	854
BlsI	GCNGC	2 cut(s)	28, 877
Bme1390I	CCNGG	4 cut(s)	74, 137, 374, 707
Bme18I	GGWCC	2 cut(s)	38, 344
BmeT110I	CYCGRG	2 cut(s)	108, 310
BmgT120I	GGNCC	5 cut(s)	38, 166, 217, 228, 344
BmiI	GGNNCC	7 cut(s)	82, 345, 488, 553, 574, 622, 874
BmrFI	CCNGG	4 cut(s)	74, 137, 374, 707
BplI	GAGNNNNNCTC	2 cut(s)	304, 336
BpmI	CTGGAG	2 cut(s)	51, 356
Bpu10I	CCTNAGC	1 cut(s)	735
Bpu1102I	GCTNAGC	1 cut(s)	854
BpuEI	CTTGAG	2 cut(s)	482, 869
BpuMI	CCSGG	1 cut(s)	137
Bsa29I	ATCGAT	3 cut(s)	606, 650, 654
BsaHI	GRCGYC	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	320, 664, 754
BsaWI	WCCGGW	4 cut(s)	336, 531, 806, 869
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	6 cut(s)	64, 110, 163, 225, 336, 740
Bse118I	RCCGGY	2 cut(s)	103, 336
Bse1I	ACTGG	2 cut(s)	330, 640
BseAI	TCCGGA	2 cut(s)	531, 869
BseBI	CCWGG	3 cut(s)	74, 374, 707
BseCI	ATCGAT	3 cut(s)	606, 650, 654
BseDI	CCNNGG	3 cut(s)	320, 664, 754
BseGI	GGATG	2 cut(s)	750, 866
BseLI	CCNNNNNNNGG	6 cut(s)	64, 110, 163, 225, 336, 740
BseMII	CTCAG	2 cut(s)	353, 726
BseNI	ACTGG	2 cut(s)	330, 640
BseRI	GAGGAG	3 cut(s)	26, 708, 711
BseX3I	CGGCCG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	13
Bsh1285I	CGRYCG	2 cut(s)	104, 654
BshFI	GGCC	9 cut(s)	57, 77, 103, 167, 176, 201, 218, 229, 325
BshTI	ACCGGT	1 cut(s)	336
BshVI	ATCGAT	3 cut(s)	606, 650, 654
BsiEI	CGRYCG	2 cut(s)	104, 654
BsiHKAI	GWGCWC	2 cut(s)	93, 741
BsiHKCI	CYCGRG	2 cut(s)	108, 310
BsiSI	CCGG	9 cut(s)	41, 58, 78, 104, 136, 337, 532, 807, 870
BslI	CCNNNNNNNGG	6 cut(s)	64, 110, 163, 225, 336, 740
BsmAI	GTCTC	4 cut(s)	10, 12, 205, 440
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	9 cut(s)	57, 77, 103, 167, 176, 201, 218, 229, 325
Bso31I	GGTCTC	1 cut(s)	10
BsoBI	CYCGRG	2 cut(s)	108, 310
Bsp1286I	GDGCHC	2 cut(s)	93, 741
Bsp13I	TCCGGA	2 cut(s)	531, 869
Bsp1720I	GCTNAGC	1 cut(s)	854
BspACI	CCGC	3 cut(s)	65, 819, 876
BspANI	GGCC	9 cut(s)	57, 77, 103, 167, 176, 201, 218, 229, 325
BspCNI	CTCAG	2 cut(s)	354, 727
BspDI	ATCGAT	3 cut(s)	606, 650, 654
BspEI	TCCGGA	2 cut(s)	531, 869
BspLI	GGNNCC	7 cut(s)	82, 345, 488, 553, 574, 622, 874
BspPI	GGATC	8 cut(s)	200, 437, 546, 559, 567, 580, 594, 655
BspTNI	GGTCTC	1 cut(s)	10
BsrFI	RCCGGY	2 cut(s)	103, 336
BsrI	ACTGG	2 cut(s)	330, 640
BssAI	RCCGGY	2 cut(s)	103, 336
BssECI	CCNNGG	3 cut(s)	320, 664, 754
BssNI	GRCGYC	1 cut(s)	44
BssSI	CACGAG	2 cut(s)	234, 504
BssT1I	CCWWGG	2 cut(s)	664, 754
Bst2BI	CACGAG	2 cut(s)	234, 504
Bst2UI	CCWGG	3 cut(s)	74, 374, 707
Bst4CI	ACNGT	3 cut(s)	194, 743, 830
Bst6I	CTCTTC	1 cut(s)	726
BstACI	GRCGYC	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	3 cut(s)	362, 735, 854
BstF5I	GGATG	2 cut(s)	750, 866
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	3 cut(s)	135, 308, 791
BstMAI	GTCTC	4 cut(s)	10, 12, 205, 440
BstMCI	CGRYCG	2 cut(s)	104, 654
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 454
BstNI	CCWGG	3 cut(s)	74, 374, 707
BstSCI	CCNGG	4 cut(s)	72, 135, 372, 705
BstSFI	CTRYAG	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	13
BstX2I	RGATCY	4 cut(s)	429, 551, 572, 599
BstYI	RGATCY	4 cut(s)	429, 551, 572, 599
BstZI	CGGCCG	1 cut(s)	101
Bsu15I	ATCGAT	3 cut(s)	606, 650, 654
BsuRI	GGCC	9 cut(s)	57, 77, 103, 167, 176, 201, 218, 229, 325
BsuTUI	ATCGAT	3 cut(s)	606, 650, 654
BtsCI	GGATG	2 cut(s)	750, 866
BtsIMutI	CAGTG	3 cut(s)	199, 633, 835
Cac8I	GCNNGC	1 cut(s)	105
CfoI	GCGC	3 cut(s)	135, 308, 791
Cfr10I	RCCGGY	2 cut(s)	103, 336
Cfr13I	GGNCC	5 cut(s)	38, 166, 217, 228, 344
ClaI	ATCGAT	3 cut(s)	606, 650, 654
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	224
CspAI	ACCGGT	1 cut(s)	336
CviAII	CATG	1 cut(s)	682
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	3 cut(s)	362, 735, 854
EaeI	YGGCCR	3 cut(s)	55, 101, 323
EagI	CGGCCG	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	726
EarI	CTCTTC	1 cut(s)	726
EciI	GGCGGA	1 cut(s)	80
EclXI	CGGCCG	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	664, 754
Eco147I	AGGCCT	1 cut(s)	176
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	2 cut(s)	38, 344
Eco52I	CGGCCG	1 cut(s)	101
Eco57I	CTGAAG	2 cut(s)	464, 609
Eco88I	CYCGRG	2 cut(s)	108, 310
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	3 cut(s)	72, 372, 705
EcoT14I	CCWWGG	2 cut(s)	664, 754
ErhI	CCWWGG	2 cut(s)	664, 754
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	685
FaiI	YATR	3 cut(s)	265, 453, 683
FatI	CATG	1 cut(s)	681
Fnu4HI	GCNGC	2 cut(s)	27, 876
FokI	GGATG	2 cut(s)	737, 853
Fsp4HI	GCNGC	2 cut(s)	27, 876
GlaI	GCGC	3 cut(s)	134, 307, 790
GluI	GCNGC	2 cut(s)	27, 876
GsuI	CTGGAG	2 cut(s)	51, 356
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	9 cut(s)	57, 77, 103, 167, 176, 201, 218, 229, 325
HapII	CCGG	9 cut(s)	41, 58, 78, 104, 136, 337, 532, 807, 870
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	3 cut(s)	135, 308, 791
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	685
Hin6I	GCGC	3 cut(s)	133, 306, 789
HinP1I	GCGC	3 cut(s)	133, 306, 789
HinfI	GANTC	5 cut(s)	315, 366, 421, 511, 629
HpaII	CCGG	9 cut(s)	41, 58, 78, 104, 136, 337, 532, 807, 870
HphI	GGTGA	4 cut(s)	326, 650, 695, 755
Hpy188I	TCNGA	6 cut(s)	10, 210, 444, 516, 765, 778
Hpy188III	TCNNGA	8 cut(s)	312, 413, 463, 490, 506, 532, 848, 870
Hpy99I	CGWCG	2 cut(s)	49, 693
HpyAV	CCTTC	5 cut(s)	262, 517, 584, 760, 776
HpyCH4III	ACNGT	3 cut(s)	194, 743, 830
HpyCH4IV	ACGT	2 cut(s)	474, 537
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 454
HpyF3I	CTNAG	3 cut(s)	362, 735, 854
HpySE526I	ACGT	2 cut(s)	474, 537
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	685
HspAI	GCGC	3 cut(s)	133, 306, 789
Kpn2I	TCCGGA	2 cut(s)	531, 869
KroI	GCCGGC	1 cut(s)	103
KroNI	GCCGGC	1 cut(s)	105
LmnI	GCTCC	3 cut(s)	80, 376, 872
Lsp1109I	GCAGC	1 cut(s)	13
MaeII	ACGT	2 cut(s)	474, 537
MaeIII	GTNAC	5 cut(s)	238, 332, 669, 797, 821
MboII	GAAGA	1 cut(s)	713
MflI	RGATCY	4 cut(s)	429, 551, 572, 599
MhlI	GDGCHC	2 cut(s)	93, 741
MluCI	AATT	1 cut(s)	565
MlyI	GAGTC	1 cut(s)	520
MroI	TCCGGA	2 cut(s)	531, 869
MroNI	GCCGGC	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	720
MseI	TTAA	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	878
MspI	CCGG	9 cut(s)	41, 58, 78, 104, 136, 337, 532, 807, 870
MspR9I	CCNGG	4 cut(s)	74, 137, 374, 707
MvaI	CCWGG	3 cut(s)	74, 374, 707
MwoI	GCNNNNNNNGC	2 cut(s)	173, 454
NaeI	GCCGGC	1 cut(s)	105
NciI	CCSGG	1 cut(s)	137
NgoMIV	GCCGGC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	685
NlaIV	GGNNCC	7 cut(s)	82, 345, 488, 553, 574, 622, 874
NmeAIII	GCCGAG	2 cut(s)	143, 301
NmuCI	GTSAC	2 cut(s)	238, 332
PaeR7I	CTCGAG	1 cut(s)	310
PceI	AGGCCT	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	232
PdiI	GCCGGC	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	4 cut(s)	315, 366, 421, 629
PfoI	TCCNGGA	1 cut(s)	372
PinAI	ACCGGT	1 cut(s)	336
PkrI	GCNGC	2 cut(s)	28, 877
Ple19I	CGATCG	1 cut(s)	654
PleI	GAGTC	1 cut(s)	519
PpsI	GAGTC	1 cut(s)	519
PpuMI	RGGWCCY	1 cut(s)	344
Psp1406I	AACGTT	2 cut(s)	474, 537
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	3 cut(s)	72, 372, 705
PspGI	CCWGG	3 cut(s)	72, 372, 705
PspN4I	GGNNCC	7 cut(s)	82, 345, 488, 553, 574, 622, 874
PspPI	GGNCC	5 cut(s)	38, 166, 217, 228, 344
PspPPI	RGGWCCY	1 cut(s)	344
PsuI	RGATCY	4 cut(s)	429, 551, 572, 599
PvuI	CGATCG	1 cut(s)	654
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	2 cut(s)	27, 876
Sau96I	GGNCC	5 cut(s)	38, 166, 217, 228, 344
SchI	GAGTC	1 cut(s)	520
ScrFI	CCNGG	4 cut(s)	74, 137, 374, 707
SduI	GDGCHC	2 cut(s)	93, 741
SfcI	CTRYAG	1 cut(s)	190
SfiI	GGCCNNNNNGGCC	1 cut(s)	173
Sfr274I	CTCGAG	1 cut(s)	310
SgrAI	CRCCGGYG	1 cut(s)	336
SinI	GGWCC	2 cut(s)	38, 344
SlaI	CTCGAG	1 cut(s)	310
SmlI	CTYRAG	3 cut(s)	310, 497, 848
SmoI	CTYRAG	3 cut(s)	310, 497, 848
Sse9I	AATT	1 cut(s)	565
SseBI	AGGCCT	1 cut(s)	176
SsiI	CCGC	3 cut(s)	65, 819, 876
StuI	AGGCCT	1 cut(s)	176
StyD4I	CCNGG	4 cut(s)	72, 135, 372, 705
StyI	CCWWGG	2 cut(s)	664, 754
TaaI	ACNGT	3 cut(s)	194, 743, 830
TaiI	ACGT	2 cut(s)	477, 540
TaqI	TCGA	7 cut(s)	311, 462, 558, 606, 650, 654, 714
TasI	AATT	1 cut(s)	565
TauI	GCSGC	1 cut(s)	878
TfiI	GAWTC	4 cut(s)	315, 366, 421, 629
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	3 cut(s)	199, 640, 835
TseFI	GTSAC	2 cut(s)	238, 332
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	2 cut(s)	238, 332
TspGWI	ACGGA	2 cut(s)	76, 245
TspRI	CASTG	3 cut(s)	199, 640, 835
VpaK11BI	GGWCC	2 cut(s)	38, 344
XhoI	CTCGAG	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.