Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000962.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

163217 .. 164730

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgagaagggatggactctttgaaggaatgggttcaagctacagaatggctgttcccatacttcacgtccaactaatggtggttaccaaggctaaagggggtgcagagactcaatctgatattcggttccttcactctctgcccctccctgagataatggcgcggctcaacccgacgttagatcttcagtccttcccaatatttctaacaccaatggaaccacaaacccagcaaccaaccgaggatggaggaagaaacaaagcagccgggagtagtgctaacaggctttgcaggcagaccaataccaggtggaatcccactacagatcaaataagaatcctcaaggagcttttctataacaagggagttaggtccccaactacagagcagattcagaggatctgtctccagctgaaatggtatggaaagatcgagagcaagaaagtctattattggttcgggaaccacagggctcgggagaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

161

Amino Acids

18.57

Weight (kDa)

9.95

Isoelectric Point (pI)

58.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	102 - 161	4.6e-11	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccII	CGCG	1 cut(s)	163
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	76, 306
AgsI	TTSAA	2 cut(s)	23, 36
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	305
AluBI	AGCT	3 cut(s)	39, 349, 412
AluI	AGCT	3 cut(s)	39, 349, 412
Alw26I	GTCTC	2 cut(s)	101, 410
AlwI	GGATC	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	474
ApeKI	GCWGC	1 cut(s)	263
Asp700I	GAANNNNTTC	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	372
AsuC2I	CCSGG	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	474
AvaII	GGWCC	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	475
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	2 cut(s)	5, 239
BciT130I	CCWGG	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	101, 410
BfmI	CTRYAG	3 cut(s)	40, 321, 381
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	2 cut(s)	164, 264
BlsI	GCNGC	2 cut(s)	165, 265
Bme1390I	CCNGG	2 cut(s)	268, 307
Bme18I	GGWCC	1 cut(s)	372
BmeT110I	CYCGRG	1 cut(s)	474
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	372
BmiI	GGNNCC	4 cut(s)	128, 219, 374, 464
BmrFI	CCNGG	2 cut(s)	268, 307
BpmI	CTGGAG	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	87, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 306
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	87, 240
BseGI	GGATG	2 cut(s)	16, 250
BseLI	CCNNNNNNNGG	2 cut(s)	76, 306
BseMII	CTCAG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	275
BseYI	CCCAGC	1 cut(s)	228
BsgI	GTGCAG	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	76, 306
BsmAI	GTCTC	2 cut(s)	101, 410
BsmFI	GGGAC	1 cut(s)	358
BsoBI	CYCGRG	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	4 cut(s)	181, 325, 399, 429
BspACI	CCGC	1 cut(s)	163
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	4 cut(s)	128, 219, 374, 464
BspPI	GGATC	1 cut(s)	407
BssECI	CCNNGG	2 cut(s)	87, 240
BssMI	GATC	4 cut(s)	181, 325, 399, 429
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	82
BstF5I	GGATG	2 cut(s)	16, 250
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	4 cut(s)	184, 328, 402, 432
BstMAI	GTCTC	2 cut(s)	101, 410
BstMBI	GATC	4 cut(s)	181, 325, 399, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNI	CCWGG	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	266, 305
BstSFI	CTRYAG	3 cut(s)	40, 321, 381
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	275
BstX2I	RGATCY	2 cut(s)	181, 399
BstYI	RGATCY	2 cut(s)	181, 399
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	16, 250
Cac8I	GCNNGC	1 cut(s)	293
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	372
CsiI	ACCWGGT	1 cut(s)	305
CviJI	RGCY	9 cut(s)	39, 50, 92, 166, 266, 286, 349, 412, 473
CviKI_1	RGCY	9 cut(s)	39, 50, 92, 166, 266, 286, 349, 412, 473
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	4 cut(s)	183, 327, 401, 431
DpnII	GATC	4 cut(s)	181, 325, 399, 429
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	474
Eco91I	GGTNACC	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	372
EcoO65I	GGTNACC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	87
FaiI	YATR	3 cut(s)	59, 357, 423
FaqI	GGGAC	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	164, 264
FokI	GGATG	2 cut(s)	23, 257
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	2 cut(s)	164, 264
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	2 cut(s)	164, 264
GsaI	CCCAGC	1 cut(s)	232
GsuI	CTGGAG	1 cut(s)	392
HapII	CCGG	1 cut(s)	267
HhaI	GCGC	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	5 cut(s)	15, 109, 313, 336, 391
HpaII	CCGG	1 cut(s)	267
Hpy188I	TCNGA	2 cut(s)	118, 396
Hpy188III	TCNNGA	3 cut(s)	433, 460, 476
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	3 cut(s)	17, 140, 202
HpyCH4IV	ACGT	2 cut(s)	66, 176
HpyCH4V	TGCA	2 cut(s)	104, 291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	2 cut(s)	66, 176
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	4 cut(s)	181, 325, 399, 429
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	9 cut(s)	162, 242, 268, 277, 280, 292, 319, 422, 454
Lsp1109I	GCAGC	1 cut(s)	275
MabI	ACCWGGT	1 cut(s)	305
MaeII	ACGT	2 cut(s)	66, 176
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	4 cut(s)	183, 327, 401, 431
MboI	GATC	4 cut(s)	181, 325, 399, 429
MboII	GAAGA	2 cut(s)	176, 264
MflI	RGATCY	2 cut(s)	181, 399
MhlI	GDGCHC	1 cut(s)	475
MlyI	GAGTC	2 cut(s)	9, 103
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	5 cut(s)	155, 235, 242, 350, 390
MroXI	GAANNNNTTC	1 cut(s)	31
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	2 cut(s)	268, 307
MvaI	CCWGG	1 cut(s)	307
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	292
NciI	CCSGG	1 cut(s)	268
NdeII	GATC	4 cut(s)	181, 325, 399, 429
NlaIV	GGNNCC	4 cut(s)	128, 219, 374, 464
PdmI	GAANNNNTTC	1 cut(s)	31
PfeI	GAWTC	3 cut(s)	313, 336, 391
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	165, 265
PleI	GAGTC	2 cut(s)	9, 103
PpsI	GAGTC	2 cut(s)	9, 103
PpuMI	RGGWCCY	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	305
PspEI	GGTNACC	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	4 cut(s)	128, 219, 374, 464
PspPI	GGNCC	1 cut(s)	372
PspPPI	RGGWCCY	1 cut(s)	372
PsuI	RGATCY	2 cut(s)	181, 399
PvuII	CAGCTG	1 cut(s)	412
SatI	GCNGC	2 cut(s)	164, 264
Sau3AI	GATC	4 cut(s)	181, 325, 399, 429
Sau96I	GGNCC	1 cut(s)	372
SchI	GAGTC	2 cut(s)	9, 103
ScrFI	CCNGG	2 cut(s)	268, 307
SduI	GDGCHC	1 cut(s)	475
SetI	ASST	7 cut(s)	41, 69, 179, 311, 351, 374, 414
SexAI	ACCWGGT	1 cut(s)	305
SfcI	CTRYAG	3 cut(s)	40, 321, 381
SinI	GGWCC	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SsiI	CCGC	1 cut(s)	163
SspI	AATATT	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	266, 305
StyI	CCWWGG	1 cut(s)	87
TaiI	ACGT	2 cut(s)	69, 179
TaqI	TCGA	1 cut(s)	432
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	3 cut(s)	313, 336, 391
TseI	GCWGC	1 cut(s)	263
Van91I	CCANNNNNTGG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	372
XmnI	GAANNNNTTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.