Rmu_sc0000972.1_g000002

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000972.1
N/A
Physical Location & Seq
Reverse (-)
6429 .. 6764
336 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
atgcctgatgcatttactgatatcgcaaaagtgactagatcacctataccagctgcaaatgtgcctgcaaggttagaagtctctaacaaggggcacggtgccacacatagaggcactacaaccacacttagtgtagatgtggttgaggccatggctccccaaaggaagagggggaggccacttggttcgattgacactcacccaaggaagaagagggtgagtaaggcacaaacagatccattaatcatcaatgtagagaatctctctcatgagattgtctttgattacagttatgtccatgaatcaatactggaggacgctccgatgtttgtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.21

Weight (kDa)

8.13

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AclWI GGATC 1 cut(s) 230
AdeI CACNNNGTG 1 cut(s) 131
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 85
AlwI GGATC 1 cut(s) 230
AoxI GGCC 2 cut(s) 147, 176
ApeKI GCWGC 1 cut(s) 53
AseI ATTAAT 1 cut(s) 242
AsuHPI GGTGA 3 cut(s) 33, 191, 229
BaeGI GKGCMC 1 cut(s) 96
BanI GGYRCC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 1 cut(s) 36
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 100, 156
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BpmI CTGGAG 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 150, 203
Bse1I ACTGG 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 150, 203
BseNI ACTGG 1 cut(s) 315
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 2 cut(s) 149, 178
BshNI GGYRCC 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 85
BsnI GGCC 2 cut(s) 149, 178
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 38, 235
Bsp19I CCATGG 1 cut(s) 150
BspANI GGCC 2 cut(s) 149, 178
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 2 cut(s) 100, 156
BspPI GGATC 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 2 cut(s) 150, 203
BssMI GATC 2 cut(s) 38, 235
BssT1I CCWWGG 2 cut(s) 150, 203
Bst4CI ACNGT 2 cut(s) 98, 290
Bst6I CTCTTC 2 cut(s) 161, 206
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 150
BstKTI GATC 2 cut(s) 41, 238
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 2 cut(s) 38, 235
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BsuRI GGCC 2 cut(s) 149, 178
BtgI CCRYGG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 66
CciI TCATGA 1 cut(s) 268
CseI GACGC 1 cut(s) 326
CviAII CATG 3 cut(s) 151, 269, 299
CviJI RGCY 4 cut(s) 53, 149, 155, 178
CviKI_1 RGCY 4 cut(s) 53, 149, 155, 178
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 40, 237
DpnII GATC 2 cut(s) 38, 235
DraIII CACNNNGTG 1 cut(s) 131
Eam1104I CTCTTC 2 cut(s) 161, 206
EarI CTCTTC 2 cut(s) 161, 206
Eco130I CCWWGG 2 cut(s) 150, 203
Eco32I GATATC 1 cut(s) 22
EcoRV GATATC 1 cut(s) 22
EcoT14I CCWWGG 2 cut(s) 150, 203
EcoT22I ATGCAT 1 cut(s) 13
ErhI CCWWGG 2 cut(s) 150, 203
FaeI CATG 3 cut(s) 154, 272, 302
FaiI YATR 6 cut(s) 47, 108, 152, 270, 294, 300
FatI CATG 3 cut(s) 150, 268, 298
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 36
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 2 cut(s) 149, 178
HgaI GACGC 1 cut(s) 326
Hin1II CATG 3 cut(s) 154, 272, 302
HinfI GANTC 2 cut(s) 259, 302
HphI GGTGA 3 cut(s) 33, 191, 229
Hpy188I TCNGA 1 cut(s) 324
Hpy188III TCNNGA 1 cut(s) 269
HpyCH4III ACNGT 2 cut(s) 98, 290
HpyCH4V TGCA 3 cut(s) 11, 56, 68
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 3 cut(s) 154, 272, 302
Kzo9I GATC 2 cut(s) 38, 235
LmnI GCTCC 2 cut(s) 160, 325
LpnPI CCDG 4 cut(s) 18, 63, 78, 296
Lsp1109I GCAGC 1 cut(s) 40
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 40, 237
MboI GATC 2 cut(s) 38, 235
MboII GAAGA 3 cut(s) 178, 220, 223
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 96
MnlI CCTC 6 cut(s) 104, 139, 162, 168, 207, 307
Mph1103I ATGCAT 1 cut(s) 13
MseI TTAA 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 53
NcoI CCATGG 1 cut(s) 150
NdeII GATC 2 cut(s) 38, 235
NlaIII CATG 3 cut(s) 154, 272, 302
NlaIV GGNNCC 2 cut(s) 100, 156
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 13
PagI TCATGA 1 cut(s) 268
PfeI GAWTC 2 cut(s) 259, 302
PkrI GCNGC 1 cut(s) 55
PshBI ATTAAT 1 cut(s) 242
PspN4I GGNNCC 2 cut(s) 100, 156
PsuI RGATCY 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 53
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 2 cut(s) 38, 235
SduI GDGCHC 1 cut(s) 96
SetI ASST 3 cut(s) 46, 55, 74
SspMI CTAG 1 cut(s) 36
StyI CCWWGG 2 cut(s) 150, 203
TaaI ACNGT 2 cut(s) 98, 290
TaqI TCGA 1 cut(s) 188
TfiI GAWTC 2 cut(s) 259, 302
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 315
VspI ATTAAT 1 cut(s) 242
XspI CTAG 1 cut(s) 36
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.