Rmu_sc0000982.1_g000079

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000982.1
N/A
Physical Location & Seq
Forward (+)
311479 .. 311805
327 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
atgtcgaagccgaagcttgactttcctatacttgactcaactggctcggaatatcatagttgggtcacggatgttgagtaccacctcacttcaaaagggatcctacctgtaattcaggcaccaaaccccgaactcatatttgagcgtacgactacaaataatgccactgctctcatcttgatgagacgccacatgggtaaatcattcctattggagtacatggcaatcaaggatactagagaattatgggttgcgctaaaagagcgttttggcaatgtcaaggactccctcctccccgacttgaaagttcaattgagcaatctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.39

Weight (kDa)

6.83

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 118
AclWI GGATC 2 cut(s) 94, 107
AcyI GRCGYC 1 cut(s) 187
AfaI GTAC 3 cut(s) 80, 148, 218
AgsI TTSAA 3 cut(s) 93, 304, 311
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 2 cut(s) 94, 107
AspLEI GCGC 1 cut(s) 256
BamHI GGATCC 1 cut(s) 99
BanI GGYRCC 1 cut(s) 118
BciVI GTATCC 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 1 cut(s) 237
BfuI GTATCC 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 101, 120
BsaHI GRCGYC 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 280
BseGI GGATG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 281
BshNI GGYRCC 1 cut(s) 118
BsiWI CGTACG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 178
BsmBI CGTCTC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 101, 120
BspPI GGATC 2 cut(s) 94, 107
BspT107I GGYRCC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 1 cut(s) 46
BssMI GATC 1 cut(s) 99
BssNI GRCGYC 1 cut(s) 187
BstACI GRCGYC 1 cut(s) 187
BstF5I GGATG 1 cut(s) 76
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BsuI GTATCC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 165
CfoI GCGC 1 cut(s) 256
CseI GACGC 1 cut(s) 195
Csp6I GTAC 3 cut(s) 79, 147, 217
CviAII CATG 2 cut(s) 193, 220
CviJI RGCY 3 cut(s) 10, 16, 45
CviKI_1 RGCY 3 cut(s) 10, 16, 45
CviQI GTAC 3 cut(s) 79, 147, 217
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 2 cut(s) 196, 223
FaiI YATR 7 cut(s) 29, 57, 137, 194, 221, 247, 325
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 2 cut(s) 192, 219
FokI GGATG 1 cut(s) 83
FspBI CTAG 1 cut(s) 237
GlaI GCGC 1 cut(s) 255
HgaI GACGC 1 cut(s) 195
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 187
Hin1II CATG 2 cut(s) 196, 223
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 35, 284
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
Hsp92I GRCGYC 1 cut(s) 187
Hsp92II CATG 2 cut(s) 196, 223
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 3 cut(s) 27, 101, 120
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MfeI CAATTG 1 cut(s) 311
MflI RGATCY 1 cut(s) 99
MluCI AATT 3 cut(s) 111, 242, 311
MlyI GAGTC 2 cut(s) 29, 278
MnlI CCTC 3 cut(s) 95, 299, 302
MslI CAYNNNNRTG 1 cut(s) 179
MunI CAATTG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 262
NdeII GATC 1 cut(s) 99
NlaIII CATG 2 cut(s) 196, 223
NlaIV GGNNCC 2 cut(s) 101, 120
NmuCI GTSAC 1 cut(s) 64
Pfl23II CGTACG 1 cut(s) 146
PleI GAGTC 2 cut(s) 29, 278
PpsI GAGTC 2 cut(s) 29, 278
PspLI CGTACG 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 101, 120
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 3 cut(s) 80, 148, 218
RsaNI GTAC 3 cut(s) 79, 147, 217
RseI CAYNNNNRTG 1 cut(s) 179
Sau3AI GATC 1 cut(s) 99
SchI GAGTC 2 cut(s) 29, 278
SetI ASST 3 cut(s) 18, 87, 109
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 3 cut(s) 111, 242, 311
SspMI CTAG 1 cut(s) 237
TaqI TCGA 1 cut(s) 5
TasI AATT 3 cut(s) 111, 242, 311
TatI WGTACW 1 cut(s) 216
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 1 cut(s) 172
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.