Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000982.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

359391 .. 362428

Gene Structure 3038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggctggtgttggacgcggtcagacagtaggggaagctggccgagtgggctggtatgtgaccgacaggtctggccgaggtgggcatgctctagggtggcaagatgttcagcctcatgatcctcaagttcaagatacagccaaccatgctgtgaagagccttcagcaaaagtccaattcattgttctcttatgagcttcaagagattgtcttcacaattggggtaatgtgcagcaggggaagcaatgacgctacacattactataactacgtgatggaactctcgcccagttctcaaagaaagcctctccgggatcgggagaggaatctatgtaagaaggcggacgagctttcaatactttgtggtaccgataccagatcttcgcctgcaaaagttcatcaccaagaccggcagctttcaattaattccggtctgctcagattgagttcgtctgcttcagaaccgccgtgcgctgtcaaccatcgtgcgtcgtccggactggtcgatttccagatcgcccacgatcctcgctcaaccacagcagcgtcgtcgcttagccacagcaggctgcacagccccgtcgcccggttcacatcagcatcgctcattcaagtggatcccagatcgatcgattccagcccagaaaacgatccgatcctcgcccaaacttgggacgattccatatcgatctcttcactcggtcaactcggtcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

238

Amino Acids

25.89

Weight (kDa)

6.79

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	67
Acc65I	GGTACC	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	365
AccII	CGCG	1 cut(s)	18
AccIII	TCCGGA	1 cut(s)	494
AciI	CCGC	3 cut(s)	18, 341, 464
AclWI	GGATC	7 cut(s)	113, 321, 518, 611, 624, 644, 649
AcoI	YGGCCR	2 cut(s)	40, 73
AcuI	CTGAAG	2 cut(s)	146, 441
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	4 cut(s)	316, 585, 669, 670
AgsI	TTSAA	5 cut(s)	131, 200, 354, 420, 611
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	4 cut(s)	38, 196, 349, 415
AluI	AGCT	4 cut(s)	38, 196, 349, 415
AlwI	GGATC	7 cut(s)	113, 321, 518, 611, 624, 644, 649
Aor13HI	TCCGGA	1 cut(s)	494
AoxI	GGCC	2 cut(s)	40, 73
ApeKI	GCWGC	4 cut(s)	231, 412, 542, 568
AseI	ATTAAT	1 cut(s)	423
Asp718I	GGTACC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	473
AsuC2I	CCSGG	2 cut(s)	311, 586
AsuHPI	GGTGA	1 cut(s)	392
BamHI	GGATCC	1 cut(s)	616
BanI	GGYRCC	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	202
BbvI	GCAGC	4 cut(s)	243, 424, 554, 555
BccI	CCATC	2 cut(s)	268, 489
BceAI	ACGGC	1 cut(s)	451
BcgI	CGANNNNNNTGC	2 cut(s)	531, 565
BcnI	CCSGG	2 cut(s)	311, 586
BfaI	CTAG	1 cut(s)	92
BglI	GCCNNNNNGGC	1 cut(s)	48
BglII	AGATCT	1 cut(s)	377
BisI	GCNGC	4 cut(s)	232, 413, 543, 569
BlpI	GCTNAGC	1 cut(s)	554
BlsI	GCNGC	4 cut(s)	233, 414, 544, 570
Bme1390I	CCNGG	2 cut(s)	311, 586
BmiI	GGNNCC	2 cut(s)	367, 618
BmrFI	CCNGG	2 cut(s)	311, 586
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	608
BmuI	ACTGGG	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	202
Bpu1102I	GCTNAGC	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	108
BpuMI	CCSGG	2 cut(s)	311, 586
Bsa29I	ATCGAT	3 cut(s)	626, 630, 686
BsaAI	YACGTR	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	76
BsaWI	WCCGGW	2 cut(s)	428, 494
Bsc4I	CCNNNNNNNGG	4 cut(s)	316, 585, 669, 670
Bse118I	RCCGGY	1 cut(s)	408
Bse1I	ACTGG	2 cut(s)	288, 504
Bse3DI	GCAATG	1 cut(s)	250
BseAI	TCCGGA	1 cut(s)	494
BseCI	ATCGAT	3 cut(s)	626, 630, 686
BseDI	CCNNGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	4 cut(s)	316, 585, 669, 670
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	451
BseNI	ACTGG	2 cut(s)	288, 504
BseXI	GCAGC	4 cut(s)	243, 424, 554, 555
BsgI	GTGCAG	2 cut(s)	250, 554
Bsh1236I	CGCG	1 cut(s)	18
Bsh1285I	CGRYCG	1 cut(s)	630
BshFI	GGCC	2 cut(s)	42, 75
BshNI	GGYRCC	1 cut(s)	365
BshVI	ATCGAT	3 cut(s)	626, 630, 686
BsiEI	CGRYCG	1 cut(s)	630
BsiSI	CCGG	5 cut(s)	310, 409, 429, 495, 586
BslFI	GGGAC	1 cut(s)	686
BslI	CCNNNNNNNGG	4 cut(s)	316, 585, 669, 670
BsmFI	GGGAC	1 cut(s)	686
BsnI	GGCC	2 cut(s)	42, 75
Bsp13I	TCCGGA	1 cut(s)	494
Bsp1720I	GCTNAGC	1 cut(s)	554
BspACI	CCGC	3 cut(s)	18, 341, 464
BspANI	GGCC	2 cut(s)	42, 75
BspCNI	CTCAG	1 cut(s)	450
BspDI	ATCGAT	3 cut(s)	626, 630, 686
BspEI	TCCGGA	1 cut(s)	494
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	367, 618
BspPI	GGATC	7 cut(s)	113, 321, 518, 611, 624, 644, 649
BspQI	GCTCTTC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	288, 504
BssAI	RCCGGY	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	2 cut(s)	149, 697
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	4 cut(s)	40, 87, 387, 566
BstDEI	CTNAG	2 cut(s)	437, 554
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	473
BstMCI	CGRYCG	1 cut(s)	630
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 146, 240
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	309, 584
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	4 cut(s)	243, 424, 554, 555
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	2 cut(s)	377, 616
BstYI	RGATCY	2 cut(s)	377, 616
Bsu15I	ATCGAT	3 cut(s)	626, 630, 686
BsuRI	GGCC	2 cut(s)	42, 75
BsuTUI	ATCGAT	3 cut(s)	626, 630, 686
BtgZI	GCGATG	1 cut(s)	585
Cac8I	GCNNGC	4 cut(s)	40, 87, 387, 566
CciI	TCATGA	1 cut(s)	115
CfoI	GCGC	1 cut(s)	473
Cfr10I	RCCGGY	1 cut(s)	408
ClaI	ATCGAT	3 cut(s)	626, 630, 686
CseI	GACGC	4 cut(s)	24, 257, 477, 534
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	3 cut(s)	86, 116, 146
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	2 cut(s)	437, 554
DrdI	GACNNNNNNGTC	1 cut(s)	67
DseDI	GACNNNNNNGTC	1 cut(s)	67
EaeI	YGGCCR	2 cut(s)	40, 73
Eam1104I	CTCTTC	2 cut(s)	149, 697
EarI	CTCTTC	2 cut(s)	149, 697
EciI	GGCGGA	1 cut(s)	356
Eco57I	CTGAAG	2 cut(s)	146, 441
FaeI	CATG	3 cut(s)	89, 119, 149
FaiI	YATR	8 cut(s)	57, 87, 117, 147, 192, 264, 331, 683
FaqI	GGGAC	1 cut(s)	686
FatI	CATG	3 cut(s)	85, 115, 145
Fnu4HI	GCNGC	4 cut(s)	232, 413, 543, 569
Fsp4HI	GCNGC	4 cut(s)	232, 413, 543, 569
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	4 cut(s)	232, 413, 543, 569
HaeIII	GGCC	2 cut(s)	42, 75
HapII	CCGG	5 cut(s)	310, 409, 429, 495, 586
HgaI	GACGC	4 cut(s)	24, 257, 477, 534
HhaI	GCGC	1 cut(s)	473
Hin1II	CATG	3 cut(s)	89, 119, 149
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HincII	GTYRAC	2 cut(s)	478, 704
HindII	GTYRAC	2 cut(s)	478, 704
HinfI	GANTC	3 cut(s)	325, 632, 677
HpaII	CCGG	5 cut(s)	310, 409, 429, 495, 586
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	3 cut(s)	478, 591, 704
Hpy188I	TCNGA	4 cut(s)	24, 440, 460, 654
Hpy188III	TCNNGA	6 cut(s)	116, 131, 200, 317, 495, 511
Hpy8I	GTNNAC	3 cut(s)	478, 591, 704
Hpy99I	CGWCG	4 cut(s)	493, 550, 553, 584
HpyAV	CCTTC	2 cut(s)	170, 331
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	3 cut(s)	231, 389, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 146, 240
HpyF3I	CTNAG	2 cut(s)	437, 554
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	89, 119, 149
HspAI	GCGC	1 cut(s)	471
Kpn2I	TCCGGA	1 cut(s)	494
KpnI	GGTACC	1 cut(s)	369
LguI	GCTCTTC	1 cut(s)	149
Lsp1109I	GCAGC	4 cut(s)	243, 424, 554, 555
LweI	GCATC	1 cut(s)	608
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	58
MboII	GAAGA	4 cut(s)	166, 202, 372, 684
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	2 cut(s)	377, 616
MluCI	AATT	4 cut(s)	175, 216, 420, 424
MnlI	CCTC	7 cut(s)	71, 123, 132, 315, 315, 537, 668
MroI	TCCGGA	1 cut(s)	494
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	611
MspI	CCGG	5 cut(s)	310, 409, 429, 495, 586
MspR9I	CCNGG	2 cut(s)	311, 586
MunI	CAATTG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	48, 146, 240
NciI	CCSGG	2 cut(s)	311, 586
NlaIII	CATG	3 cut(s)	89, 119, 149
NlaIV	GGNNCC	2 cut(s)	367, 618
NmeAIII	GCCGAG	2 cut(s)	68, 101
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	89
PagI	TCATGA	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	325, 632, 677
PflFI	GACNNNGTC	1 cut(s)	18
PfoI	TCCNGGA	1 cut(s)	309
PkrI	GCNGC	4 cut(s)	233, 414, 544, 570
Ple19I	CGATCG	1 cut(s)	630
Ppu21I	YACGTR	1 cut(s)	271
PshBI	ATTAAT	1 cut(s)	423
PspN4I	GGNNCC	2 cut(s)	367, 618
PsuI	RGATCY	2 cut(s)	377, 616
PsyI	GACNNNGTC	1 cut(s)	18
PvuI	CGATCG	1 cut(s)	630
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
RseI	CAYNNNNRTG	1 cut(s)	611
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	4 cut(s)	232, 413, 543, 569
ScrFI	CCNGG	2 cut(s)	311, 586
SetI	ASST	7 cut(s)	40, 71, 82, 198, 273, 351, 417
SfaNI	GCATC	1 cut(s)	608
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	4 cut(s)	175, 216, 420, 424
SsiI	CCGC	3 cut(s)	18, 341, 464
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	2 cut(s)	309, 584
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	4 cut(s)	504, 626, 630, 686
TaqII	GACCGA	3 cut(s)	77, 689, 698
TasI	AATT	4 cut(s)	175, 216, 420, 424
TfiI	GAWTC	3 cut(s)	325, 632, 677
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	4 cut(s)	231, 412, 542, 568
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	168, 386
Tth111I	GACNNNGTC	1 cut(s)	18
VspI	ATTAAT	1 cut(s)	423
XceI	RCATGY	1 cut(s)	89
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.