Rmu_sc0000987.1_g000020

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000987.1
N/A
Physical Location & Seq
Reverse (-)
75649 .. 76011
363 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
atgactcatcatatggatgattcgctccggtacaagtatctgaatgaagaagaccccagaaggttgtgggtctcactcaaagaacgctttggcaacgttcgtgactccttgcttcctgacttagaagttatatggcataatctccacttctgtgatttcaagacagttcttgactacaactcggaagcagttcacattaaatccttaatggaattctatgtaaaagatatcacagatgccatgttgattgagaggactctctctactttccccgtctttgctttgagggttgctaaaaactatttaatcgatgttactgcaggacgaatcacaaagttcactctctcgcactcttcttattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

14.24

Weight (kDa)

6.28

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 96
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 1 cut(s) 160
AleI CACNNNNGTG 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 76
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 57
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BcoDI GTCTC 1 cut(s) 76
BfmI CTRYAG 1 cut(s) 318
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 57
Bsa29I ATCGAT 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 76
BsaWI WCCGGW 1 cut(s) 27
BseCI ATCGAT 1 cut(s) 309
BseGI GGATG 1 cut(s) 22
BshVI ATCGAT 1 cut(s) 309
BsiSI CCGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 76
Bso31I GGTCTC 1 cut(s) 76
BspDI ATCGAT 1 cut(s) 309
BspMAI CTGCAG 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 358
BstDEI CTNAG 1 cut(s) 121
BstF5I GGATG 1 cut(s) 22
BstMAI GTCTC 1 cut(s) 76
BstSFI CTRYAG 1 cut(s) 318
BstV2I GAAGAC 1 cut(s) 57
Bsu15I ATCGAT 1 cut(s) 309
BsuTUI ATCGAT 1 cut(s) 309
BtsCI GGATG 1 cut(s) 22
ClaI ATCGAT 1 cut(s) 309
Csp6I GTAC 1 cut(s) 31
CviAII CATG 1 cut(s) 241
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 358
Eco31I GGTCTC 1 cut(s) 76
Eco32I GATATC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 212
EcoRV GATATC 1 cut(s) 229
FaeI CATG 1 cut(s) 244
FaiI YATR 7 cut(s) 12, 14, 131, 133, 138, 219, 242
FatI CATG 1 cut(s) 240
FauNDI CATATG 1 cut(s) 12
FokI GGATG 1 cut(s) 29
HapII CCGG 1 cut(s) 28
Hin1II CATG 1 cut(s) 244
HinfI GANTC 5 cut(s) 4, 20, 104, 256, 327
HpaII CCGG 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 193, 339
Hpy188I TCNGA 2 cut(s) 42, 184
Hpy188III TCNNGA 4 cut(s) 101, 116, 160, 170
Hpy8I GTNNAC 2 cut(s) 193, 339
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 320
HpyF3I CTNAG 1 cut(s) 121
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 1 cut(s) 244
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 4 cut(s) 41, 70, 129, 306
LweI GCATC 1 cut(s) 226
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 101, 313
MboII GAAGA 3 cut(s) 59, 62, 345
MluCI AATT 1 cut(s) 212
MlyI GAGTC 2 cut(s) 98, 250
MnlI CCTC 2 cut(s) 246, 279
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 4 cut(s) 198, 206, 305, 361
MslI CAYNNNNRTG 2 cut(s) 15, 150
MspI CCGG 1 cut(s) 28
NdeI CATATG 1 cut(s) 12
NlaIII CATG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 101
OliI CACNNNNGTG 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 2 cut(s) 20, 327
PleI GAGTC 2 cut(s) 98, 250
PpsI GAGTC 2 cut(s) 98, 250
Psp1406I AACGTT 1 cut(s) 96
PstI CTGCAG 1 cut(s) 322
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 2 cut(s) 15, 150
SaqAI TTAA 4 cut(s) 198, 206, 305, 361
SchI GAGTC 2 cut(s) 98, 250
SetI ASST 2 cut(s) 65, 99
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 318
SmiMI CAYNNNNRTG 2 cut(s) 15, 150
Sse9I AATT 1 cut(s) 212
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 309
TasI AATT 1 cut(s) 212
TfiI GAWTC 2 cut(s) 20, 327
Tru1I TTAA 4 cut(s) 198, 206, 305, 361
Tru9I TTAA 4 cut(s) 198, 206, 305, 361
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 60
XapI RAATTY 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.