Rmu_sc0000995.1_g000001

Glucuronokinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000995.1
N/A
Physical Location & Seq
Reverse (-)
2089 .. 10344
8256 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1272 bp
atggatcatcatcgtgatcagaatagcgaaacggcgtcgtcggagccggcggccatagagcacagggcctacgccagggtgggtctgctcggcaaccccagcgatgtctactatggctgtacgatctctttcagcctcggcaacttctgggcctccgtccgattacacccctccgatgacctcgtcatccagccccaccccacccacgacctcgtcgtcttcagatctctcccccacctggtgaatcggctagacaatgagggttattatggcggtgttcgattactgatggcgatttgcaaagtgttttttgattattgcaaggaaaaagagatccatctggactcgagaaacttcactctctcatatgatactaatatccctcgccagatgggactatcggggtctagtgctattgtgtgtgcagcccttagctgccttcttgacttctacaaggttaggcatttgatcaaagtggaggtcaggcctggcattgtcctcggcgcggagaaacagctcggcattgttgctggtcttcaagatcgggttgcacaggtttatggaggccttgtttacatggaatttgataaggaacacatggatactttggggcatggcatttacacacccatggatgtttgtcttctgccgcctctatatctcatatatgccgagaatccaagcgattctgggaaggtagggcatgctggtacgcttgatccgatggcaactggtttgttaattgtatgtgttggtaaagctactaaggttgtagatagctatcaaggtatgaccaagggttacagtggagttttccgtctgggggaggctacttcaacttgggacgctgattcaccggtcattcagcgtgagccgtgggagcatatcaaagatgaagatataaagaaaactgctgcatccttttgtggagagatctggcaagtacctccaatgttttctgccatcaaagttggaggtgaaaagatgtatgagaaggcaagaagaggagaaagcattgagctctcaccccgacggatatcaatctatcagtttgacattgagcgcagcttagatgacagacaaaatttgattttccgggttacttgctctaaagggacatatattaggtctctatgtgcagatttggggaaagctctcggcagttgtgctcatttaactgctcttcggagagattcaattggggaatattctgcagataatgcatgggacttcaaagagctggaagatgcaattaccaaaacttatttctag

Protein Analysis

423

Amino Acids

47.2

Weight (kDa)

5.88

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GHMP_kinases_N PF00288 111 - 189 5e-09 GHMP kinases N terminal domain
TruB_N PF01509 231 - 375 2.8e-51 TruB family pseudouridylate synthase (N terminal domain)
TruB_C_2 PF16198 376 - 419 1.6e-09 tRNA pseudouridylate synthase B C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 506
AciI CCGC 4 cut(s) 50, 273, 506, 650
AclWI GGATC 3 cut(s) 12, 328, 713
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 2 cut(s) 581, 1084
AcuI CTGAAG 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 35
AdeI CACNNNGTG 1 cut(s) 241
AfaI GTAC 3 cut(s) 121, 712, 945
AfiI CCNNNNNNNGG 4 cut(s) 75, 238, 505, 823
AgeI ACCGGT 1 cut(s) 856
AgsI TTSAA 4 cut(s) 539, 837, 1197, 1234
AjnI CCWGG 3 cut(s) 74, 237, 487
AjuI GAANNNNNNNTTGG 1 cut(s) 1250
AluBI AGCT 8 cut(s) 435, 517, 761, 780, 1021, 1068, 1154, 1240
AluI AGCT 8 cut(s) 435, 517, 761, 780, 1021, 1068, 1154, 1240
Alw21I GWGCWC 3 cut(s) 63, 1023, 1171
Alw26I GTCTC 1 cut(s) 1134
AlwI GGATC 3 cut(s) 12, 328, 713
Ama87I CYCGRG 1 cut(s) 346
AoxI GGCC 5 cut(s) 51, 66, 150, 485, 565
ApeKI GCWGC 4 cut(s) 425, 435, 914, 1065
ApoI RAATTY 2 cut(s) 581, 1084
ArsI GACNNNNNNTTYG 2 cut(s) 465, 497
AsiGI ACCGGT 1 cut(s) 856
AspLEI GCGC 2 cut(s) 506, 1065
AspS9I GGNCC 2 cut(s) 66, 150
AsuC2I CCSGG 1 cut(s) 1097
AsuHPI GGTGA 4 cut(s) 253, 846, 989, 1017
AvaI CYCGRG 1 cut(s) 346
BanII GRGCYC 1 cut(s) 1023
BbsI GAAGAC 3 cut(s) 211, 527, 635
Bbv12I GWGCWC 3 cut(s) 63, 1023, 1171
BbvI GCAGC 4 cut(s) 422, 437, 901, 1077
BccI CCATC 5 cut(s) 283, 345, 385, 718, 971
BceAI ACGGC 2 cut(s) 48, 859
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciT130I CCWGG 3 cut(s) 76, 239, 489
BciVI GTATCC 1 cut(s) 595
BclI TGATCA 2 cut(s) 16, 468
BcnI CCSGG 1 cut(s) 1097
BcoDI GTCTC 1 cut(s) 1134
BfaI CTAG 3 cut(s) 251, 408, 1270
BfmI CTRYAG 1 cut(s) 1212
BfuI GTATCC 1 cut(s) 595
BglII AGATCT 2 cut(s) 224, 933
BisI GCNGC 6 cut(s) 51, 426, 436, 650, 915, 1066
BlsI GCNGC 6 cut(s) 52, 427, 437, 651, 916, 1067
Bme1390I CCNGG 4 cut(s) 76, 239, 489, 1097
BmeT110I CYCGRG 1 cut(s) 346
BmgT120I GGNCC 2 cut(s) 66, 150
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 4 cut(s) 76, 239, 489, 1097
BmsI GCATC 2 cut(s) 926, 1237
BpiI GAAGAC 3 cut(s) 211, 527, 635
Bpu10I CCTNAGC 1 cut(s) 431
BpuMI CCSGG 1 cut(s) 1097
BsaBI GATNNNNATC 3 cut(s) 9, 780, 1040
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 1134
BsaJI CCNNGG 6 cut(s) 75, 136, 499, 630, 795, 875
BsaWI WCCGGW 1 cut(s) 856
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 238, 505, 823
Bse118I RCCGGY 2 cut(s) 46, 856
Bse1I ACTGG 1 cut(s) 736
Bse8I GATNNNNATC 3 cut(s) 9, 780, 1040
BseBI CCWGG 3 cut(s) 76, 239, 489
BseDI CCNNGG 6 cut(s) 75, 136, 499, 630, 795, 875
BseGI GGATG 3 cut(s) 186, 640, 917
BseJI GATNNNNATC 3 cut(s) 9, 780, 1040
BseLI CCNNNNNNNGG 4 cut(s) 75, 238, 505, 823
BseNI ACTGG 1 cut(s) 736
BseRI GAGGAG 1 cut(s) 1020
BseXI GCAGC 4 cut(s) 422, 437, 901, 1077
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 2 cut(s) 444, 1158
Bsh1236I CGCG 1 cut(s) 506
BshFI GGCC 5 cut(s) 53, 68, 152, 487, 567
BshTI ACCGGT 1 cut(s) 856
BsiHKAI GWGCWC 3 cut(s) 63, 1023, 1171
BsiHKCI CYCGRG 1 cut(s) 346
BsiSI CCGG 3 cut(s) 47, 857, 1096
BslFI GGGAC 4 cut(s) 408, 857, 1129, 1241
BslI CCNNNNNNNGG 4 cut(s) 75, 238, 505, 823
BsmAI GTCTC 1 cut(s) 1134
BsmFI GGGAC 4 cut(s) 408, 857, 1129, 1241
BsnI GGCC 5 cut(s) 53, 68, 152, 487, 567
Bso31I GGTCTC 1 cut(s) 1134
BsoBI CYCGRG 1 cut(s) 346
Bsp1286I GDGCHC 3 cut(s) 63, 1023, 1171
Bsp143I GATC 9 cut(s) 4, 16, 123, 224, 333, 468, 541, 718, 933
Bsp19I CCATGG 1 cut(s) 630
BspACI CCGC 4 cut(s) 50, 273, 506, 650
BspANI GGCC 5 cut(s) 53, 68, 152, 487, 567
BspFNI CGCG 1 cut(s) 506
BspLI GGNNCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 1216
BspPI GGATC 3 cut(s) 12, 328, 713
BspQI GCTCTTC 1 cut(s) 1188
BspTNI GGTCTC 1 cut(s) 1134
BsrFI RCCGGY 2 cut(s) 46, 856
BsrI ACTGG 1 cut(s) 736
BssAI RCCGGY 2 cut(s) 46, 856
BssECI CCNNGG 6 cut(s) 75, 136, 499, 630, 795, 875
BssMI GATC 9 cut(s) 4, 16, 123, 224, 333, 468, 541, 718, 933
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 2 cut(s) 630, 795
Bst2UI CCWGG 3 cut(s) 76, 239, 489
Bst4CI ACNGT 1 cut(s) 806
Bst6I CTCTTC 2 cut(s) 997, 1188
BstACI GRCGYC 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 1220
BstC8I GCNNGC 2 cut(s) 48, 705
BstDEI CTNAG 3 cut(s) 431, 765, 1069
BstDSI CCRYGG 2 cut(s) 630, 875
BstENI CCTNNNNNAGG 1 cut(s) 73
BstF5I GGATG 3 cut(s) 186, 640, 917
BstFNI CGCG 1 cut(s) 506
BstHHI GCGC 2 cut(s) 506, 1065
BstKTI GATC 9 cut(s) 7, 19, 126, 227, 336, 471, 544, 721, 936
BstMAI GTCTC 1 cut(s) 1134
BstMBI GATC 9 cut(s) 4, 16, 123, 224, 333, 468, 541, 718, 933
BstMWI GCNNNNNNNGC 3 cut(s) 99, 880, 1220
BstNI CCWGG 3 cut(s) 76, 239, 489
BstNSI RCATGY 1 cut(s) 707
BstSCI CCNGG 4 cut(s) 74, 237, 487, 1095
BstSFI CTRYAG 1 cut(s) 1212
BstUI CGCG 1 cut(s) 506
BstV1I GCAGC 4 cut(s) 422, 437, 901, 1077
BstV2I GAAGAC 3 cut(s) 211, 527, 635
BstX2I RGATCY 3 cut(s) 224, 333, 933
BstYI RGATCY 3 cut(s) 224, 333, 933
BsuI GTATCC 1 cut(s) 595
BsuRI GGCC 5 cut(s) 53, 68, 152, 487, 567
BtgI CCRYGG 2 cut(s) 630, 875
BtgZI GCGATG 1 cut(s) 117
BtsCI GGATG 3 cut(s) 186, 640, 917
BtsIMutI CAGTG 1 cut(s) 811
Cac8I GCNNGC 2 cut(s) 48, 705
CfoI GCGC 2 cut(s) 506, 1065
Cfr10I RCCGGY 2 cut(s) 46, 856
Cfr13I GGNCC 2 cut(s) 66, 150
CseI GACGC 2 cut(s) 24, 854
CsiI ACCWGGT 1 cut(s) 237
Csp6I GTAC 3 cut(s) 120, 711, 944
CspAI ACCGGT 1 cut(s) 856
CviAII CATG 6 cut(s) 577, 598, 614, 631, 704, 1224
CviQI GTAC 3 cut(s) 120, 711, 944
DdeI CTNAG 3 cut(s) 431, 765, 1069
DpnI GATC 9 cut(s) 6, 18, 125, 226, 335, 470, 543, 720, 935
DpnII GATC 9 cut(s) 4, 16, 123, 224, 333, 468, 541, 718, 933
DraIII CACNNNGTG 1 cut(s) 241
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 2 cut(s) 997, 1188
EarI CTCTTC 2 cut(s) 997, 1188
Ecl136II GAGCTC 1 cut(s) 1021
Eco130I CCWWGG 2 cut(s) 630, 795
Eco147I AGGCCT 2 cut(s) 487, 567
Eco24I GRGCYC 1 cut(s) 1023
Eco31I GGTCTC 1 cut(s) 1134
Eco32I GATATC 1 cut(s) 1038
Eco53kI GAGCTC 1 cut(s) 1021
Eco57I CTGAAG 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 1021
EcoNI CCTNNNNNAGG 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 66
EcoRII CCWGG 3 cut(s) 74, 237, 487
EcoRV GATATC 1 cut(s) 1038
EcoT14I CCWWGG 2 cut(s) 630, 795
EcoT22I ATGCAT 1 cut(s) 1225
EcoT38I GRGCYC 1 cut(s) 1023
ErhI CCWWGG 2 cut(s) 630, 795
FaeI CATG 6 cut(s) 580, 601, 617, 634, 707, 1227
FaqI GGGAC 4 cut(s) 408, 857, 1129, 1241
FatI CATG 6 cut(s) 576, 597, 613, 630, 703, 1223
FauNDI CATATG 1 cut(s) 367
FbaI TGATCA 2 cut(s) 16, 468
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 6 cut(s) 51, 426, 436, 650, 915, 1066
FokI GGATG 3 cut(s) 173, 647, 904
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 6 cut(s) 51, 426, 436, 650, 915, 1066
FspBI CTAG 3 cut(s) 251, 408, 1270
GlaI GCGC 2 cut(s) 505, 1064
GluI GCNGC 6 cut(s) 51, 426, 436, 650, 915, 1066
GsaI CCCAGC 1 cut(s) 102
HaeIII GGCC 5 cut(s) 53, 68, 152, 487, 567
HapII CCGG 3 cut(s) 47, 857, 1096
HgaI GACGC 2 cut(s) 24, 854
HhaI GCGC 2 cut(s) 506, 1065
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 6 cut(s) 580, 601, 617, 634, 707, 1227
Hin6I GCGC 2 cut(s) 504, 1063
HinP1I GCGC 2 cut(s) 504, 1063
HinfI GANTC 6 cut(s) 244, 344, 676, 686, 851, 1193
HpaII CCGG 3 cut(s) 47, 857, 1096
HphI GGTGA 4 cut(s) 253, 846, 989, 1017
Hpy166II GTNNAC 2 cut(s) 109, 574
Hpy188I TCNGA 7 cut(s) 21, 43, 161, 175, 224, 723, 1188
Hpy188III TCNNGA 5 cut(s) 14, 341, 348, 443, 539
Hpy8I GTNNAC 2 cut(s) 109, 574
Hpy99I CGWCG 4 cut(s) 40, 43, 218, 1035
HpyAV CCTTC 3 cut(s) 449, 688, 988
HpyCH4III ACNGT 1 cut(s) 806
HpyCH4V TGCA 9 cut(s) 300, 321, 425, 551, 917, 1139, 1214, 1223, 1250
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 880, 1220
HpyF3I CTNAG 3 cut(s) 431, 765, 1069
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 6 cut(s) 580, 601, 617, 634, 707, 1227
HspAI GCGC 2 cut(s) 504, 1063
KroI GCCGGC 1 cut(s) 46
KroNI GCCGGC 1 cut(s) 48
Ksp22I TGATCA 2 cut(s) 16, 468
Kzo9I GATC 9 cut(s) 4, 16, 123, 224, 333, 468, 541, 718, 933
LguI GCTCTTC 1 cut(s) 1188
LmnI GCTCC 2 cut(s) 43, 880
Lsp1109I GCAGC 4 cut(s) 422, 437, 901, 1077
LweI GCATC 2 cut(s) 926, 1237
MabI ACCWGGT 1 cut(s) 237
MaeI CTAG 3 cut(s) 251, 408, 1270
MaeIII GTNAC 2 cut(s) 800, 1099
MalI GATC 9 cut(s) 6, 18, 125, 226, 335, 470, 543, 720, 935
MboI GATC 9 cut(s) 4, 16, 123, 224, 333, 468, 541, 718, 933
MboII GAAGA 7 cut(s) 211, 527, 635, 908, 1014, 1175, 1256
MfeI CAATTG 1 cut(s) 1197
MflI RGATCY 3 cut(s) 224, 333, 933
MhlI GDGCHC 3 cut(s) 63, 1023, 1171
MluCI AATT 5 cut(s) 581, 741, 1084, 1197, 1251
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 2 cut(s) 21, 952
Mph1103I ATGCAT 1 cut(s) 1225
MroNI GCCGGC 1 cut(s) 46
MseI TTAA 2 cut(s) 740, 1175
MslI CAYNNNNRTG 2 cut(s) 12, 629
MspI CCGG 3 cut(s) 47, 857, 1096
MspR9I CCNGG 4 cut(s) 76, 239, 489, 1097
MunI CAATTG 1 cut(s) 1197
MvaI CCWGG 3 cut(s) 76, 239, 489
MvnI CGCG 1 cut(s) 506
MwoI GCNNNNNNNGC 3 cut(s) 99, 880, 1220
NaeI GCCGGC 1 cut(s) 48
NciI CCSGG 1 cut(s) 1097
NcoI CCATGG 1 cut(s) 630
NdeI CATATG 1 cut(s) 367
NdeII GATC 9 cut(s) 4, 16, 123, 224, 333, 468, 541, 718, 933
NgoMIV GCCGGC 1 cut(s) 46
NlaIII CATG 6 cut(s) 580, 601, 617, 634, 707, 1227
NlaIV GGNNCC 1 cut(s) 45
NmeAIII GCCGAG 6 cut(s) 69, 117, 480, 498, 697, 1137
NsiI ATGCAT 1 cut(s) 1225
NspI RCATGY 1 cut(s) 707
PaeI GCATGC 1 cut(s) 707
PaeR7I CTCGAG 1 cut(s) 346
PceI AGGCCT 2 cut(s) 487, 567
PciSI GCTCTTC 1 cut(s) 1188
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 719
PdiI GCCGGC 1 cut(s) 48
PfeI GAWTC 5 cut(s) 244, 676, 686, 851, 1193
PflFI GACNNNGTC 2 cut(s) 182, 212
PinAI ACCGGT 1 cut(s) 856
PkrI GCNGC 6 cut(s) 52, 427, 437, 651, 916, 1067
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 1023
Psp6I CCWGG 3 cut(s) 74, 237, 487
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 3 cut(s) 74, 237, 487
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 2 cut(s) 66, 150
PstI CTGCAG 1 cut(s) 1216
PsuI RGATCY 3 cut(s) 224, 333, 933
PsyI GACNNNGTC 2 cut(s) 182, 212
RsaI GTAC 3 cut(s) 121, 712, 945
RsaNI GTAC 3 cut(s) 120, 711, 944
RseI CAYNNNNRTG 2 cut(s) 12, 629
SacI GAGCTC 1 cut(s) 1023
SapI GCTCTTC 1 cut(s) 1188
SaqAI TTAA 2 cut(s) 740, 1175
SatI GCNGC 6 cut(s) 51, 426, 436, 650, 915, 1066
Sau3AI GATC 9 cut(s) 4, 16, 123, 224, 333, 468, 541, 718, 933
Sau96I GGNCC 2 cut(s) 66, 150
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 4 cut(s) 76, 239, 489, 1097
SduI GDGCHC 3 cut(s) 63, 1023, 1171
SexAI ACCWGGT 1 cut(s) 237
SfaNI GCATC 2 cut(s) 926, 1237
SfcI CTRYAG 1 cut(s) 1212
Sfr274I CTCGAG 1 cut(s) 346
SlaI CTCGAG 1 cut(s) 346
SmiMI CAYNNNNRTG 2 cut(s) 12, 629
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
SphI GCATGC 1 cut(s) 707
Sse9I AATT 5 cut(s) 581, 741, 1084, 1197, 1251
SseBI AGGCCT 2 cut(s) 487, 567
SsiI CCGC 4 cut(s) 50, 273, 506, 650
SspI AATATT 1 cut(s) 1208
SspMI CTAG 3 cut(s) 251, 408, 1270
SstI GAGCTC 1 cut(s) 1023
StuI AGGCCT 2 cut(s) 487, 567
StyD4I CCNGG 4 cut(s) 74, 237, 487, 1095
StyI CCWWGG 2 cut(s) 630, 795
TaaI ACNGT 1 cut(s) 806
TaqI TCGA 2 cut(s) 280, 347
TasI AATT 5 cut(s) 581, 741, 1084, 1197, 1251
TauI GCSGC 2 cut(s) 53, 652
TfiI GAWTC 5 cut(s) 244, 676, 686, 851, 1193
Tru1I TTAA 2 cut(s) 740, 1175
Tru9I TTAA 2 cut(s) 740, 1175
TscAI CASTG 1 cut(s) 811
TseI GCWGC 4 cut(s) 425, 435, 914, 1065
TspDTI ATGAA 1 cut(s) 909
TspGWI ACGGA 3 cut(s) 145, 806, 1048
TspRI CASTG 1 cut(s) 811
Tth111I GACNNNGTC 2 cut(s) 182, 212
XagI CCTNNNNNAGG 1 cut(s) 73
XapI RAATTY 2 cut(s) 581, 1084
XceI RCATGY 1 cut(s) 707
XhoI CTCGAG 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 3 cut(s) 251, 408, 1270
Zsp2I ATGCAT 1 cut(s) 1225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.