Rmu_sc0001004.1_g000003

Endoplasmic reticulum-Golgi intermediate compartment protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001004.1
N/A
Physical Location & Seq
Reverse (-)
7994 .. 8541
548 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
atgaaagagtatgataggtcatggccagcggtctacttcttgtatgatctttcgccaattactgtaactatcaaagaagaacgacgcaaatttcttcattttatcactcggctttgtgcagtattgggtggtaccttcgctttgacaggaatgctagaccgatggatgttcaggtttgttgaagcattgactaaaccaaatgctagaattgtactgcgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

73

Amino Acids

8.7

Weight (kDa)

9.89

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COPIIcoated_ERV PF07970 5 - 53 5.5e-14 Endoplasmic reticulum vesicle transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 33
AciI CCGC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 23
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 2 cut(s) 133, 213
AgsI TTSAA 1 cut(s) 182
AoxI GGCC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 89
Asp718I GGTACC 1 cut(s) 131
BalI TGGCCA 1 cut(s) 25
BanI GGYRCC 1 cut(s) 131
BccI CCATC 1 cut(s) 156
BfaI CTAG 2 cut(s) 155, 204
BmiI GGNNCC 1 cut(s) 133
BseGI GGATG 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 138
BshFI GGCC 1 cut(s) 25
BshNI GGYRCC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 1 cut(s) 29
BspANI GGCC 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 131
BssMI GATC 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 27
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 27
CseI GACGC 1 cut(s) 93
Csp6I GTAC 2 cut(s) 132, 212
CviAII CATG 1 cut(s) 21
CviJI RGCY 2 cut(s) 25, 112
CviKI_1 RGCY 2 cut(s) 25, 112
CviQI GTAC 2 cut(s) 132, 212
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 23
FaeI CATG 1 cut(s) 24
FaiI YATR 3 cut(s) 12, 22, 45
FatI CATG 1 cut(s) 20
FblI GTMKAC 1 cut(s) 33
FokI GGATG 1 cut(s) 178
FspBI CTAG 2 cut(s) 155, 204
HaeIII GGCC 1 cut(s) 25
HgaI GACGC 1 cut(s) 93
Hin1II CATG 1 cut(s) 24
Hpy166II GTNNAC 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 1 cut(s) 119
Hsp92II CATG 1 cut(s) 24
KpnI GGTACC 1 cut(s) 135
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 3 cut(s) 39, 132, 157
MaeI CTAG 2 cut(s) 155, 204
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 86, 89
MlsI TGGCCA 1 cut(s) 25
MluCI AATT 3 cut(s) 57, 89, 207
MluNI TGGCCA 1 cut(s) 25
Mox20I TGGCCA 1 cut(s) 25
MscI TGGCCA 1 cut(s) 25
Msp20I TGGCCA 1 cut(s) 25
MspA1I CMGCKG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 156
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 24
NlaIV GGNNCC 1 cut(s) 133
NmeAIII GCCGAG 1 cut(s) 88
PctI GAATGC 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 133
RsaI GTAC 2 cut(s) 133, 213
RsaNI GTAC 2 cut(s) 132, 212
Sau3AI GATC 1 cut(s) 46
SetI ASST 3 cut(s) 20, 137, 176
SgeI CNNG 8 cut(s) 33, 38, 52, 120, 159, 167, 184, 216
Sse9I AATT 3 cut(s) 57, 89, 207
SsiI CCGC 1 cut(s) 29
SspMI CTAG 2 cut(s) 155, 204
TaaI ACNGT 1 cut(s) 64
TaqII GACCGA 1 cut(s) 174
TasI AATT 3 cut(s) 57, 89, 207
TatI WGTACW 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 17, 86
XapI RAATTY 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 2 cut(s) 155, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.