Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001023.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3285

Gene Structure 3285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ttgtcctcaaaagggtcagcatgggatgagatagatttcgagttcttgggtaacttgagtggtgatccgtacaccgtccacaccaatgtgtatagccaaggcaagggcgatagagagcaacagttccatctctggtttgacccgaccaccgactttcacacatattccattctttggaaccctcagcgcgttgtattctatgttgatggcaccccaataagagagttcaagaacttggagtcaattggtgttccattcccaaaggaccagcccatgagattacactctagcctttggagtgctgatgactgggctacaaggggtggcctagttaaaacagactggaccaaagctcctttcattgcttcttataggaacttcaatgccaatgcttgtatatggtcctctggaacatcttcttgcacttcaaaatccccatcgtctggtggatggctctcacaagagttgggtttagcaacgtcgaaattaggattagcgctttctctctccggtgcggcgtcgaactccagatcatgcctgaagctctatctccggtgtggcggtgcggcgtcgaactccgaatcacgcctgaagctctctctctccaccggaggggcggcctcgaactccaaatcttgcctgaagctctcttttcacctccggtgccgcgtcgaactccggaatcaccctgaagctccaaccattgctttgcttatgctgctcttcgcaattccgttcactgtttctgctatgggtatcgggcctcacccatcttcaatctgttttgtccatggcaattcccttaactacttctgcaatgggtctcaggcctcacccattgaagtcggagaagggagatccgcaaccgtggaagtcaatgatgggaggagaagaagaagtggtcggattccggtcatcggtagccggatttcggttaccggtttccggaatccggtcatcggtcgctggaatccggttaccgttcgccggagtccggtcgccggagactggtcactggagcacagcaaggtggaaggtaacttctctctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

350

Amino Acids

38.23

Weight (kDa)

9.23

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	2 - 117	1.1e-45	Glycosyl hydrolases family 16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	209, 663
AccB7I	CCANNNNNTGG	2 cut(s)	174, 443
AccII	CGCG	2 cut(s)	189, 669
AccIII	TCCGGA	2 cut(s)	678, 945
AciI	CCGC	6 cut(s)	515, 561, 566, 617, 667, 861
AclWI	GGATC	2 cut(s)	59, 852
AcuI	CTGAAG	4 cut(s)	560, 611, 662, 711
AcyI	GRCGYC	2 cut(s)	518, 569
AfaI	GTAC	1 cut(s)	71
AfeI	AGCGCT	1 cut(s)	498
AgeI	ACCGGT	1 cut(s)	938
AgsI	TTSAA	5 cut(s)	229, 382, 429, 777, 842
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	5 cut(s)	353, 544, 595, 646, 695
AluI	AGCT	5 cut(s)	353, 544, 595, 646, 695
Alw21I	GWGCWC	1 cut(s)	1023
Alw26I	GTCTC	2 cut(s)	828, 999
AlwI	GGATC	2 cut(s)	59, 852
Aor13HI	TCCGGA	2 cut(s)	678, 945
Aor51HI	AGCGCT	1 cut(s)	498
AoxI	GGCC	4 cut(s)	325, 618, 761, 828
ApeKI	GCWGC	1 cut(s)	718
AsiGI	ACCGGT	1 cut(s)	938
Asp700I	GAANNNNTTC	1 cut(s)	415
AspLEI	GCGC	2 cut(s)	189, 499
AspS9I	GGNCC	4 cut(s)	265, 345, 402, 761
AsuHPI	GGTGA	5 cut(s)	74, 647, 677, 758, 825
AvaII	GGWCC	3 cut(s)	265, 345, 402
BanI	GGYRCC	2 cut(s)	209, 663
Bbv12I	GWGCWC	1 cut(s)	1023
BbvCI	CCTCAGC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	705
BccI	CCATC	6 cut(s)	135, 200, 444, 445, 778, 875
BcoDI	GTCTC	2 cut(s)	828, 999
BfaI	CTAG	2 cut(s)	288, 329
BfoI	RGCGCY	1 cut(s)	500
BisI	GCNGC	5 cut(s)	516, 567, 618, 667, 719
BlsI	GCNGC	5 cut(s)	517, 568, 619, 668, 720
Bme18I	GGWCC	3 cut(s)	265, 345, 402
BmgT120I	GGNCC	4 cut(s)	265, 345, 402, 761
BmiI	GGNNCC	3 cut(s)	179, 211, 665
BmrI	ACTGGG	1 cut(s)	319
BmuI	ACTGGG	1 cut(s)	319
BpmI	CTGGAG	2 cut(s)	511, 1037
Bpu10I	CCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	76
BsaHI	GRCGYC	2 cut(s)	518, 569
BsaI	GGTCTC	1 cut(s)	828
BsaJI	CCNNGG	3 cut(s)	97, 790, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	337, 367
Bse118I	RCCGGY	1 cut(s)	938
Bse1I	ACTGG	4 cut(s)	314, 347, 1013, 1020
Bse3DI	GCAATG	3 cut(s)	360, 702, 823
BseAI	TCCGGA	2 cut(s)	678, 945
BseDI	CCNNGG	3 cut(s)	97, 790, 867
BseGI	GGATG	2 cut(s)	31, 455
BseMI	GCAATG	3 cut(s)	360, 702, 823
BseMII	CTCAG	2 cut(s)	197, 839
BseNI	ACTGG	4 cut(s)	314, 347, 1013, 1020
BseRI	GAGGAG	1 cut(s)	901
BseXI	GCAGC	1 cut(s)	705
Bsh1236I	CGCG	2 cut(s)	189, 669
Bsh1285I	CGRYCG	2 cut(s)	964, 999
BshFI	GGCC	4 cut(s)	327, 620, 763, 830
BshNI	GGYRCC	2 cut(s)	209, 663
BshTI	ACCGGT	1 cut(s)	938
BsiEI	CGRYCG	2 cut(s)	964, 999
BsiHKAI	GWGCWC	1 cut(s)	1023
BsmAI	GTCTC	2 cut(s)	828, 999
BsnI	GGCC	4 cut(s)	327, 620, 763, 830
Bso31I	GGTCTC	1 cut(s)	828
Bsp1286I	GDGCHC	1 cut(s)	1023
Bsp13I	TCCGGA	2 cut(s)	678, 945
Bsp143I	GATC	3 cut(s)	64, 530, 857
Bsp19I	CCATGG	1 cut(s)	790
BspACI	CCGC	6 cut(s)	515, 561, 566, 617, 667, 861
BspANI	GGCC	4 cut(s)	327, 620, 763, 830
BspCNI	CTCAG	2 cut(s)	196, 838
BspEI	TCCGGA	2 cut(s)	678, 945
BspFNI	CGCG	2 cut(s)	189, 669
BspLI	GGNNCC	3 cut(s)	179, 211, 665
BspPI	GGATC	2 cut(s)	59, 852
BspQI	GCTCTTC	1 cut(s)	728
BspT107I	GGYRCC	2 cut(s)	209, 663
BspTNI	GGTCTC	1 cut(s)	828
BsrDI	GCAATG	3 cut(s)	360, 702, 823
BsrFI	RCCGGY	1 cut(s)	938
BsrI	ACTGG	4 cut(s)	314, 347, 1013, 1020
BssAI	RCCGGY	1 cut(s)	938
BssECI	CCNNGG	3 cut(s)	97, 790, 867
BssMI	GATC	3 cut(s)	64, 530, 857
BssNI	GRCGYC	2 cut(s)	518, 569
BssT1I	CCWWGG	2 cut(s)	97, 790
Bst4CI	ACNGT	5 cut(s)	76, 123, 742, 868, 982
Bst6I	CTCTTC	1 cut(s)	728
BstACI	GRCGYC	2 cut(s)	518, 569
BstDEI	CTNAG	2 cut(s)	183, 825
BstDSI	CCRYGG	2 cut(s)	790, 867
BstEII	GGTNACC	2 cut(s)	934, 976
BstF5I	GGATG	2 cut(s)	31, 455
BstFNI	CGCG	2 cut(s)	189, 669
BstH2I	RGCGCY	1 cut(s)	500
BstHHI	GCGC	2 cut(s)	189, 499
BstKTI	GATC	3 cut(s)	67, 533, 860
BstMAI	GTCTC	2 cut(s)	828, 999
BstMBI	GATC	3 cut(s)	64, 530, 857
BstMCI	CGRYCG	2 cut(s)	964, 999
BstMWI	GCNNNNNNNGC	1 cut(s)	718
BstPI	GGTNACC	2 cut(s)	934, 976
BstUI	CGCG	2 cut(s)	189, 669
BstV1I	GCAGC	1 cut(s)	705
BstX2I	RGATCY	1 cut(s)	857
BstYI	RGATCY	1 cut(s)	857
BsuRI	GGCC	4 cut(s)	327, 620, 763, 830
BtgI	CCRYGG	2 cut(s)	790, 867
BtsCI	GGATG	2 cut(s)	31, 455
BtsIMutI	CAGTG	2 cut(s)	738, 1013
CfoI	GCGC	2 cut(s)	189, 499
Cfr10I	RCCGGY	1 cut(s)	938
Cfr13I	GGNCC	4 cut(s)	265, 345, 402, 761
CseI	GACGC	3 cut(s)	507, 558, 658
Csp6I	GTAC	1 cut(s)	70
CspAI	ACCGGT	1 cut(s)	938
CviAII	CATG	4 cut(s)	21, 274, 534, 791
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	2 cut(s)	183, 825
DpnI	GATC	3 cut(s)	66, 532, 859
DpnII	GATC	3 cut(s)	64, 530, 857
Eam1104I	CTCTTC	1 cut(s)	728
EarI	CTCTTC	1 cut(s)	728
Eco130I	CCWWGG	2 cut(s)	97, 790
Eco147I	AGGCCT	1 cut(s)	830
Eco31I	GGTCTC	1 cut(s)	828
Eco47I	GGWCC	3 cut(s)	265, 345, 402
Eco47III	AGCGCT	1 cut(s)	498
Eco57I	CTGAAG	4 cut(s)	560, 611, 662, 711
Eco91I	GGTNACC	2 cut(s)	934, 976
EcoO65I	GGTNACC	2 cut(s)	934, 976
EcoT14I	CCWWGG	2 cut(s)	97, 790
ErhI	CCWWGG	2 cut(s)	97, 790
FaeI	CATG	4 cut(s)	24, 277, 537, 794
FatI	CATG	4 cut(s)	20, 273, 533, 790
Fnu4HI	GCNGC	5 cut(s)	516, 567, 618, 667, 719
FokI	GGATG	2 cut(s)	38, 462
Fsp4HI	GCNGC	5 cut(s)	516, 567, 618, 667, 719
FspBI	CTAG	2 cut(s)	288, 329
GlaI	GCGC	2 cut(s)	188, 498
GluI	GCNGC	5 cut(s)	516, 567, 618, 667, 719
GsuI	CTGGAG	2 cut(s)	511, 1037
HaeII	RGCGCY	1 cut(s)	500
HaeIII	GGCC	4 cut(s)	327, 620, 763, 830
HgaI	GACGC	3 cut(s)	507, 558, 658
HhaI	GCGC	2 cut(s)	189, 499
Hin1I	GRCGYC	2 cut(s)	518, 569
Hin1II	CATG	4 cut(s)	24, 277, 537, 794
Hin6I	GCGC	2 cut(s)	187, 497
HinP1I	GCGC	2 cut(s)	187, 497
HinfI	GANTC	7 cut(s)	239, 581, 682, 907, 949, 970, 991
HphI	GGTGA	5 cut(s)	74, 647, 677, 758, 825
Hpy166II	GTNNAC	3 cut(s)	72, 79, 738
Hpy188I	TCNGA	3 cut(s)	580, 848, 906
Hpy188III	TCNNGA	5 cut(s)	229, 408, 528, 679, 946
Hpy8I	GTNNAC	3 cut(s)	72, 79, 738
Hpy99I	CGWCG	4 cut(s)	484, 523, 574, 674
HpyAV	CCTTC	2 cut(s)	845, 1028
HpyCH4III	ACNGT	5 cut(s)	76, 123, 742, 868, 982
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	2 cut(s)	423, 816
HpyF10VI	GCNNNNNNNGC	1 cut(s)	718
HpyF3I	CTNAG	2 cut(s)	183, 825
HpySE526I	ACGT	1 cut(s)	479
Hsp92I	GRCGYC	2 cut(s)	518, 569
Hsp92II	CATG	4 cut(s)	24, 277, 537, 794
HspAI	GCGC	2 cut(s)	187, 497
Kpn2I	TCCGGA	2 cut(s)	678, 945
Kzo9I	GATC	3 cut(s)	64, 530, 857
LguI	GCTCTTC	1 cut(s)	728
LmnI	GCTCC	3 cut(s)	358, 700, 1018
Lsp1109I	GCAGC	1 cut(s)	705
MaeI	CTAG	2 cut(s)	288, 329
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	5 cut(s)	50, 934, 976, 1011, 1037
MalI	GATC	3 cut(s)	66, 532, 859
MboI	GATC	3 cut(s)	64, 530, 857
MboII	GAAGA	5 cut(s)	408, 715, 765, 903, 906
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	1 cut(s)	857
MhlI	GDGCHC	1 cut(s)	1023
MluCI	AATT	4 cut(s)	243, 485, 729, 796
MlyI	GAGTC	2 cut(s)	248, 1000
MmeI	TCCRAC	3 cut(s)	722, 826, 884
MnlI	CCTC	9 cut(s)	16, 192, 415, 605, 631, 668, 774, 841, 879
MroI	TCCGGA	2 cut(s)	678, 945
MroXI	GAANNNNTTC	1 cut(s)	415
MseI	TTAA	2 cut(s)	333, 804
MslI	CAYNNNNRTG	2 cut(s)	84, 86
MunI	CAATTG	1 cut(s)	243
MvnI	CGCG	2 cut(s)	189, 669
MwoI	GCNNNNNNNGC	1 cut(s)	718
NcoI	CCATGG	1 cut(s)	790
NdeII	GATC	3 cut(s)	64, 530, 857
NlaIII	CATG	4 cut(s)	24, 277, 537, 794
NlaIV	GGNNCC	3 cut(s)	179, 211, 665
NmuCI	GTSAC	1 cut(s)	1011
OliI	CACNNNNGTG	1 cut(s)	86
PceI	AGGCCT	1 cut(s)	830
PciSI	GCTCTTC	1 cut(s)	728
PdmI	GAANNNNTTC	1 cut(s)	415
PfeI	GAWTC	5 cut(s)	581, 682, 907, 949, 970
PflMI	CCANNNNNTGG	2 cut(s)	174, 443
PinAI	ACCGGT	1 cut(s)	938
PkrI	GCNGC	5 cut(s)	517, 568, 619, 668, 720
PleI	GAGTC	2 cut(s)	247, 999
PpsI	GAGTC	2 cut(s)	247, 999
PspEI	GGTNACC	2 cut(s)	934, 976
PspN4I	GGNNCC	3 cut(s)	179, 211, 665
PspPI	GGNCC	4 cut(s)	265, 345, 402, 761
PsuI	RGATCY	1 cut(s)	857
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	2 cut(s)	84, 86
SapI	GCTCTTC	1 cut(s)	728
SaqAI	TTAA	2 cut(s)	333, 804
SatI	GCNGC	5 cut(s)	516, 567, 618, 667, 719
Sau3AI	GATC	3 cut(s)	64, 530, 857
Sau96I	GGNCC	4 cut(s)	265, 345, 402, 761
SchI	GAGTC	2 cut(s)	248, 1000
SduI	GDGCHC	1 cut(s)	1023
SetI	ASST	9 cut(s)	355, 482, 546, 597, 648, 660, 697, 1032, 1039
SinI	GGWCC	3 cut(s)	265, 345, 402
SmiMI	CAYNNNNRTG	2 cut(s)	84, 86
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	4 cut(s)	243, 485, 729, 796
SseBI	AGGCCT	1 cut(s)	830
SsiI	CCGC	6 cut(s)	515, 561, 566, 617, 667, 861
SspMI	CTAG	2 cut(s)	288, 329
StuI	AGGCCT	1 cut(s)	830
StyI	CCWWGG	2 cut(s)	97, 790
TaaI	ACNGT	5 cut(s)	76, 123, 742, 868, 982
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	6 cut(s)	39, 482, 521, 572, 623, 672
TaqII	GACCGA	1 cut(s)	950
TasI	AATT	4 cut(s)	243, 485, 729, 796
TauI	GCSGC	4 cut(s)	518, 569, 620, 669
TfiI	GAWTC	5 cut(s)	581, 682, 907, 949, 970
Tru1I	TTAA	2 cut(s)	333, 804
Tru9I	TTAA	2 cut(s)	333, 804
TscAI	CASTG	2 cut(s)	745, 1020
TseFI	GTSAC	1 cut(s)	1011
TseI	GCWGC	1 cut(s)	718
Tsp45I	GTSAC	1 cut(s)	1011
TspDTI	ATGAA	1 cut(s)	349
TspGWI	ACGGA	2 cut(s)	57, 723
TspRI	CASTG	2 cut(s)	745, 1020
Van91I	CCANNNNNTGG	2 cut(s)	174, 443
VpaK11BI	GGWCC	3 cut(s)	265, 345, 402
XmnI	GAANNNNTTC	1 cut(s)	415
XspI	CTAG	2 cut(s)	288, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.