Rmu_sc0001023.1_g000040

Chromatin modification-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001023.1
N/A
Physical Location & Seq
Forward (+)
192592 .. 196759
4168 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
atgagcaaacggggaattcccccgcccccgcgcccccccgctcccgcccccgcgctcaaattcccccgcgcccccgttccccgtttggggatattatcagatgggggattccccgccccgcccccgcgggactcgggtcaatgtggcaatgtattaaaagggtctgaagggtttctatcttcatcaaagagcactgccttcctgaagcgatctaggaagtttcaacctgaagacaggctcttctcattatcttccgtgacatcaccaacaatgggagataagactttggtcctggctgttctaaaagggggtatagcgaatgggcaaacttcattcggtattgctggtctaagtgatcaagaaggggagcaggtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NuA4

Protein Analysis

125

Amino Acids

13.01

Weight (kDa)

10.21

Isoelectric Point (pI)

59.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NuA4 PF09340 45 - 89 4e-11 Histone acetyltransferase subunit NuA4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 361
Acc36I ACCTGC 1 cut(s) 361
AccBSI CCGCTC 1 cut(s) 41
AccII CGCG 4 cut(s) 31, 53, 69, 127
AcsI RAATTY 2 cut(s) 15, 59
AcuI CTGAAG 3 cut(s) 186, 224, 249
AfiI CCNNNNNNNGG 3 cut(s) 86, 87, 272
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 1 cut(s) 291
Alw21I GWGCWC 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 133
ApoI RAATTY 2 cut(s) 15, 59
Asp700I GAANNNNTTC 1 cut(s) 171
AspLEI GCGC 3 cut(s) 33, 55, 71
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 255
AvaI CYCGRG 1 cut(s) 133
AvaII GGWCC 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 194
BccI CCATC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 293
BclI TGATCA 1 cut(s) 355
BfaI CTAG 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 289
BmeT110I CYCGRG 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 293
BoxI GACNNNNGTC 2 cut(s) 135, 287
BpiI GAAGAC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 125
BsaXI ACNNNNNCTCC 1 cut(s) 359
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 87, 272
Bse3DI GCAATG 1 cut(s) 154
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 125
BseLI CCNNNNNNNGG 3 cut(s) 86, 87, 272
BseMI GCAATG 1 cut(s) 154
Bsh1236I CGCG 4 cut(s) 31, 53, 69, 127
BsiHKAI GWGCWC 1 cut(s) 194
BsiHKCI CYCGRG 1 cut(s) 133
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 3 cut(s) 86, 87, 272
BsmFI GGGAC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 2 cut(s) 209, 355
BspFNI CGCG 4 cut(s) 31, 53, 69, 127
BspMI ACCTGC 1 cut(s) 361
BspQI GCTCTTC 1 cut(s) 245
BsrBI CCGCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 2 cut(s) 209, 355
Bst2UI CCWGG 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 350
BstDSI CCRYGG 1 cut(s) 125
BstFNI CGCG 4 cut(s) 31, 53, 69, 127
BstHHI GCGC 3 cut(s) 33, 55, 71
BstKTI GATC 2 cut(s) 212, 358
BstMBI GATC 2 cut(s) 209, 355
BstNI CCWGG 1 cut(s) 293
BstPAI GACNNNNGTC 2 cut(s) 135, 287
BstSCI CCNGG 1 cut(s) 291
BstUI CGCG 4 cut(s) 31, 53, 69, 127
BstV2I GAAGAC 1 cut(s) 237
BtgI CCRYGG 1 cut(s) 125
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 192
BveI ACCTGC 1 cut(s) 361
CfoI GCGC 3 cut(s) 33, 55, 71
Cfr13I GGNCC 1 cut(s) 289
Cfr42I CCGCGG 1 cut(s) 128
CviJI RGCY 2 cut(s) 238, 296
CviKI_1 RGCY 2 cut(s) 238, 296
DdeI CTNAG 1 cut(s) 350
DpnI GATC 2 cut(s) 211, 357
DpnII GATC 2 cut(s) 209, 355
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 289
Eco57I CTGAAG 3 cut(s) 186, 224, 249
Eco88I CYCGRG 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 291
FaiI YATR 1 cut(s) 314
FaqI GGGAC 1 cut(s) 143
FbaI TGATCA 1 cut(s) 355
FspBI CTAG 1 cut(s) 213
GlaI GCGC 3 cut(s) 32, 54, 70
HhaI GCGC 3 cut(s) 33, 55, 71
Hin6I GCGC 3 cut(s) 31, 53, 69
HinP1I GCGC 3 cut(s) 31, 53, 69
HinfI GANTC 2 cut(s) 108, 131
HphI GGTGA 1 cut(s) 255
Hpy188I TCNGA 2 cut(s) 100, 166
Hpy188III TCNNGA 2 cut(s) 202, 359
HpyAV CCTTC 3 cut(s) 161, 208, 356
HpyF3I CTNAG 1 cut(s) 350
HspAI GCGC 3 cut(s) 31, 53, 69
Ksp22I TGATCA 1 cut(s) 355
KspI CCGCGG 1 cut(s) 128
Kzo9I GATC 2 cut(s) 209, 355
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 2 cut(s) 46, 367
LpnPI CCDG 7 cut(s) 215, 220, 240, 278, 305, 330, 356
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 256
MalI GATC 2 cut(s) 211, 357
MbiI CCGCTC 1 cut(s) 41
MboI GATC 2 cut(s) 209, 355
MboII GAAGA 4 cut(s) 171, 232, 242, 243
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 2 cut(s) 15, 59
MlyI GAGTC 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 127
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
MvnI CGCG 4 cut(s) 31, 53, 69, 127
NdeII GATC 2 cut(s) 209, 355
NmuCI GTSAC 1 cut(s) 256
PaqCI CACCTGC 1 cut(s) 361
PciSI GCTCTTC 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 108
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PshAI GACNNNNGTC 2 cut(s) 135, 287
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspPI GGNCC 1 cut(s) 289
SacII CCGCGG 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 155
Sau3AI GATC 2 cut(s) 209, 355
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 1 cut(s) 194
SetI ASST 2 cut(s) 229, 375
Sfr303I CCGCGG 1 cut(s) 128
SgrBI CCGCGG 1 cut(s) 128
SinI GGWCC 1 cut(s) 289
Sse9I AATT 2 cut(s) 15, 59
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 291
TasI AATT 2 cut(s) 15, 59
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 2 cut(s) 171, 321
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 2 cut(s) 15, 59
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.