Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001029.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

114355 .. 121734

Gene Structure 7380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atggaaccacgaactctgcaactaatgaagctacaaacccagcaacaaatcgaggatggaggaaacaaccaagcagccgggagtagtgccaacacgcctatcaggccgaccaataaccggtggactcccacaccaaatcaactaagaatcctccaggagctttactatgacaaggtgcttaaatacgcaactccagagcagattcaagagatatgccttcatctgcaacaatatgggcagatcgaggacgagaacgtcttcttttggttccagaacctcaaggctcgtgagaggcagaagttgagggaatttcggaacgttcgggttggtggacctctcgatctcaattttggatccactagttctactgatgatggtcgtgccgccgtgaatggctgccacagacggcttcagaggagtgaggcgaagctgatggacgtggtttctcgtccagagaattgtggtgggtcaaaccatttgagagacacattatctatctataatctggagcctgtaagagatggagaagaagcattgaaagcaaagttaggtaataagaaacatatacgcaagttaactctcgactggaagcttagtagaccaagcaacaatgttgacaatgaggatgttgtacttgaaggcctgcgaccatattgtaatttggaaatttggaagattcaggggtttcatggggcgcagttgaggcgtttcttgttggagaagtatgagtttggggcttacaaagcggaattgctgtgttgggttgtagcagagatgattgcagaaaagcccagttggattaggcatgagcgtttgcaaattttctccattgatgttcagcctggtggacttagggttgccactggtgggggtgaccgcaaggtgcggatatggaacatgaaatccctgggcagggatttctcaaatgaagaatcagcccaaaggctacttgcaaccctccgtgatcactgcggttctgtgaattgtgttaggtgggctaagcatggaaccactgagtttggcagtggagagccccctgatgtcgagaattggaaagttgcaatgactttgagagggcatactgcagatgtggtaatgatatttcttgcattgtttggaatatcaatgttttcaaaggcgacgccgaggcgagcccagtgcgcgctccggtgtgaggcggcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

394

Amino Acids

44.97

Weight (kDa)

8.99

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	39 - 99	1.2e-09	Homeodomain
LRR_R13L1-DRL21	PF25019	158 - 238	2.6e-17	R13L1/DRL21 LRRs
Beta-prop_CAF1B_HIR1	PF24105	266 - 337	1.4e-08	CAF1B/HIR1 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	598
AccII	CGCG	1 cut(s)	1163
AciI	CCGC	6 cut(s)	384, 746, 877, 886, 972, 1178
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	2 cut(s)	348, 361
AcsI	RAATTY	3 cut(s)	308, 666, 819
AcuI	CTGAAG	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	1142
AfaI	GTAC	1 cut(s)	633
AfiI	CCNNNNNNNGG	5 cut(s)	117, 867, 912, 913, 1174
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	4 cut(s)	206, 538, 638, 1134
AhlI	ACTAGT	1 cut(s)	359
AjiI	CACGTC	1 cut(s)	439
AjnI	CCWGG	3 cut(s)	153, 841, 906
AloI	GAACNNNNNNTCC	2 cut(s)	887, 919
AluBI	AGCT	4 cut(s)	31, 160, 430, 592
AluI	AGCT	4 cut(s)	31, 160, 430, 592
Alw26I	GTCTC	1 cut(s)	477
AlwI	GGATC	2 cut(s)	348, 361
AoxI	GGCC	3 cut(s)	104, 640, 1179
ApeKI	GCWGC	2 cut(s)	74, 396
ApoI	RAATTY	3 cut(s)	308, 666, 819
AsiGI	ACCGGT	1 cut(s)	117
Asp700I	GAANNNNTTC	1 cut(s)	257
AspLEI	GCGC	3 cut(s)	697, 1163, 1165
AspS9I	GGNCC	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	884
AvaII	GGWCC	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	353
BanII	GRGCYC	2 cut(s)	1035, 1156
BauI	CACGAG	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	86, 383
BccI	CCATC	4 cut(s)	50, 368, 427, 515
BceAI	ACGGC	2 cut(s)	371, 422
BcgI	CGANNNNNNTGC	2 cut(s)	1140, 1174
BciT130I	CCWGG	3 cut(s)	155, 843, 908
BclI	TGATCA	1 cut(s)	964
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	477
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	1083
BglI	GCCNNNNNGGC	1 cut(s)	103
BisI	GCNGC	4 cut(s)	75, 384, 397, 1179
BlpI	GCTNAGC	1 cut(s)	999
BlsI	GCNGC	4 cut(s)	76, 385, 398, 1180
Bme1390I	CCNGG	4 cut(s)	79, 155, 843, 908
Bme18I	GGWCC	1 cut(s)	332
BmgBI	CACGTC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	5 cut(s)	6, 269, 355, 510, 1009
BmrFI	CCNGG	4 cut(s)	79, 155, 843, 908
BmrI	ACTGGG	2 cut(s)	786, 1150
BmuI	ACTGGG	2 cut(s)	786, 1150
BpiI	GAAGAC	1 cut(s)	250
BpmI	CTGGAG	3 cut(s)	137, 177, 527
Bpu1102I	GCTNAGC	1 cut(s)	999
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	1142
BsaJI	CCNNGG	3 cut(s)	906, 907, 1145
BsaWI	WCCGGW	2 cut(s)	117, 1167
Bsc4I	CCNNNNNNNGG	5 cut(s)	117, 867, 912, 913, 1174
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	4 cut(s)	590, 792, 868, 1156
Bse3DI	GCAATG	1 cut(s)	1068
BseBI	CCWGG	3 cut(s)	155, 843, 908
BseDI	CCNNGG	3 cut(s)	906, 907, 1145
BseGI	GGATG	2 cut(s)	61, 631
BseLI	CCNNNNNNNGG	5 cut(s)	117, 867, 912, 913, 1174
BseMI	GCAATG	1 cut(s)	1068
BseMII	CTCAG	1 cut(s)	1005
BseNI	ACTGG	4 cut(s)	590, 792, 868, 1156
BsePI	GCGCGC	1 cut(s)	1161
BseRI	GAGGAG	1 cut(s)	430
BseXI	GCAGC	2 cut(s)	86, 383
BseYI	CCCAGC	1 cut(s)	39
Bsh1236I	CGCG	1 cut(s)	1163
BshFI	GGCC	3 cut(s)	106, 642, 1181
BshTI	ACCGGT	1 cut(s)	117
BsiSI	CCGG	3 cut(s)	78, 118, 1168
BslI	CCNNNNNNNGG	5 cut(s)	117, 867, 912, 913, 1174
BsmAI	GTCTC	1 cut(s)	477
BsnI	GGCC	3 cut(s)	106, 642, 1181
Bsp1286I	GDGCHC	2 cut(s)	1035, 1156
Bsp143I	GATC	4 cut(s)	240, 340, 353, 964
Bsp1720I	GCTNAGC	1 cut(s)	999
BspACI	CCGC	6 cut(s)	384, 746, 877, 886, 972, 1178
BspANI	GGCC	3 cut(s)	106, 642, 1181
BspCNI	CTCAG	1 cut(s)	1006
BspFNI	CGCG	1 cut(s)	1163
BspLI	GGNNCC	5 cut(s)	6, 269, 355, 510, 1009
BspMAI	CTGCAG	1 cut(s)	1087
BspPI	GGATC	2 cut(s)	348, 361
BsrDI	GCAATG	1 cut(s)	1068
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	4 cut(s)	590, 792, 868, 1156
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	3 cut(s)	906, 907, 1145
BssHII	GCGCGC	1 cut(s)	1161
BssMI	GATC	4 cut(s)	240, 340, 353, 964
BssNI	GRCGYC	1 cut(s)	1142
BssSI	CACGAG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	285
Bst2UI	CCWGG	3 cut(s)	155, 843, 908
BstACI	GRCGYC	1 cut(s)	1142
BstC8I	GCNNGC	3 cut(s)	644, 1152, 1163
BstDEI	CTNAG	5 cut(s)	143, 593, 851, 999, 1014
BstEII	GGTNACC	1 cut(s)	872
BstF5I	GGATG	2 cut(s)	61, 631
BstFNI	CGCG	1 cut(s)	1163
BstHHI	GCGC	3 cut(s)	697, 1163, 1165
BstKTI	GATC	4 cut(s)	243, 343, 356, 967
BstMAI	GTCTC	1 cut(s)	477
BstMBI	GATC	4 cut(s)	240, 340, 353, 964
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 539, 703, 743, 1160
BstNI	CCWGG	3 cut(s)	155, 843, 908
BstPI	GGTNACC	1 cut(s)	872
BstSCI	CCNGG	4 cut(s)	77, 153, 841, 906
BstSFI	CTRYAG	1 cut(s)	1083
BstUI	CGCG	1 cut(s)	1163
BstV1I	GCAGC	2 cut(s)	86, 383
BstV2I	GAAGAC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuRI	GGCC	3 cut(s)	106, 642, 1181
BtrI	CACGTC	1 cut(s)	439
BtsCI	GGATG	2 cut(s)	61, 631
BtsI	GCAGTG	2 cut(s)	967, 1030
BtsIMutI	CAGTG	5 cut(s)	861, 967, 1011, 1030, 1163
Cac8I	GCNNGC	3 cut(s)	644, 1152, 1163
CfoI	GCGC	3 cut(s)	697, 1163, 1165
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	332
CseI	GACGC	1 cut(s)	1150
Csp6I	GTAC	1 cut(s)	632
CspAI	ACCGGT	1 cut(s)	117
CspCI	CAANNNNNGTGG	2 cut(s)	1000, 1035
CviAII	CATG	4 cut(s)	689, 806, 898, 1004
CviQI	GTAC	1 cut(s)	632
DdeI	CTNAG	5 cut(s)	143, 593, 851, 999, 1014
DpnI	GATC	4 cut(s)	242, 342, 355, 966
DpnII	GATC	4 cut(s)	240, 340, 353, 964
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eco147I	AGGCCT	1 cut(s)	642
Eco24I	GRGCYC	2 cut(s)	1035, 1156
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	395
Eco91I	GGTNACC	1 cut(s)	872
EcoO65I	GGTNACC	1 cut(s)	872
EcoRII	CCWGG	3 cut(s)	153, 841, 906
EcoT38I	GRGCYC	2 cut(s)	1035, 1156
FaeI	CATG	4 cut(s)	692, 809, 901, 1007
FatI	CATG	4 cut(s)	688, 805, 897, 1003
FbaI	TGATCA	1 cut(s)	964
FblI	GTMKAC	1 cut(s)	598
Fnu4HI	GCNGC	4 cut(s)	75, 384, 397, 1179
FokI	GGATG	2 cut(s)	68, 638
FriOI	GRGCYC	2 cut(s)	1035, 1156
Fsp4HI	GCNGC	4 cut(s)	75, 384, 397, 1179
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	3 cut(s)	696, 1162, 1164
GluI	GCNGC	4 cut(s)	75, 384, 397, 1179
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	3 cut(s)	137, 177, 527
HaeIII	GGCC	3 cut(s)	106, 642, 1181
HapII	CCGG	3 cut(s)	78, 118, 1168
HgaI	GACGC	1 cut(s)	1150
HhaI	GCGC	3 cut(s)	697, 1163, 1165
Hin1I	GRCGYC	1 cut(s)	1142
Hin1II	CATG	4 cut(s)	692, 809, 901, 1007
Hin6I	GCGC	3 cut(s)	695, 1161, 1163
HinP1I	GCGC	3 cut(s)	695, 1161, 1163
HincII	GTYRAC	2 cut(s)	576, 616
HindII	GTYRAC	2 cut(s)	576, 616
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	5 cut(s)	124, 147, 202, 676, 932
HpaI	GTTAAC	1 cut(s)	576
HpaII	CCGG	3 cut(s)	78, 118, 1168
HphI	GGTGA	1 cut(s)	884
Hpy166II	GTNNAC	6 cut(s)	123, 332, 576, 599, 616, 848
Hpy188I	TCNGA	2 cut(s)	315, 414
Hpy188III	TCNNGA	9 cut(s)	194, 206, 271, 287, 338, 452, 506, 581, 1045
Hpy8I	GTNNAC	6 cut(s)	123, 332, 576, 599, 616, 848
Hpy99I	CGWCG	1 cut(s)	1144
HpyAV	CCTTC	2 cut(s)	227, 632
HpyCH4IV	ACGT	3 cut(s)	255, 318, 438
HpyCH4V	TGCA	8 cut(s)	19, 226, 782, 817, 953, 1061, 1085, 1109
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 539, 703, 743, 1160
HpyF3I	CTNAG	5 cut(s)	143, 593, 851, 999, 1014
HpySE526I	ACGT	3 cut(s)	255, 318, 438
Hsp92I	GRCGYC	1 cut(s)	1142
Hsp92II	CATG	4 cut(s)	692, 809, 901, 1007
HspAI	GCGC	3 cut(s)	695, 1161, 1163
Ksp22I	TGATCA	1 cut(s)	964
KspAI	GTTAAC	1 cut(s)	576
Kzo9I	GATC	4 cut(s)	240, 340, 353, 964
LmnI	GCTCC	3 cut(s)	157, 508, 1170
Lsp1109I	GCAGC	2 cut(s)	86, 383
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	3 cut(s)	255, 318, 438
MaeIII	GTNAC	1 cut(s)	872
MalI	GATC	4 cut(s)	242, 342, 355, 966
MboI	GATC	4 cut(s)	240, 340, 353, 964
MboII	GAAGA	4 cut(s)	250, 539, 685, 941
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	2 cut(s)	1035, 1156
MluCI	AATT	9 cut(s)	308, 346, 457, 658, 666, 749, 819, 982, 1048
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	2 cut(s)	696, 776
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	2 cut(s)	180, 575
MspI	CCGG	3 cut(s)	78, 118, 1168
MspR9I	CCNGG	4 cut(s)	79, 155, 843, 908
MvaI	CCWGG	3 cut(s)	155, 843, 908
MvnI	CGCG	1 cut(s)	1163
MwoI	GCNNNNNNNGC	5 cut(s)	103, 539, 703, 743, 1160
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	4 cut(s)	240, 340, 353, 964
NlaIII	CATG	4 cut(s)	692, 809, 901, 1007
NlaIV	GGNNCC	5 cut(s)	6, 269, 355, 510, 1009
NmeAIII	GCCGAG	1 cut(s)	1170
NmuCI	GTSAC	1 cut(s)	872
PasI	CCCWGGG	1 cut(s)	907
PauI	GCGCGC	1 cut(s)	1161
PceI	AGGCCT	1 cut(s)	642
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	4 cut(s)	147, 202, 676, 932
PfoI	TCCNGGA	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	117
PkrI	GCNGC	4 cut(s)	76, 385, 398, 1180
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp1406I	AACGTT	1 cut(s)	318
Psp6I	CCWGG	3 cut(s)	153, 841, 906
PspEI	GGTNACC	1 cut(s)	872
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	3 cut(s)	153, 841, 906
PspN4I	GGNNCC	5 cut(s)	6, 269, 355, 510, 1009
PspPI	GGNCC	1 cut(s)	332
PstI	CTGCAG	1 cut(s)	1087
PsuI	RGATCY	1 cut(s)	353
PteI	GCGCGC	1 cut(s)	1161
RsaI	GTAC	1 cut(s)	633
RsaNI	GTAC	1 cut(s)	632
SaqAI	TTAA	2 cut(s)	180, 575
SatI	GCNGC	4 cut(s)	75, 384, 397, 1179
Sau3AI	GATC	4 cut(s)	240, 340, 353, 964
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	4 cut(s)	79, 155, 843, 908
SduI	GDGCHC	2 cut(s)	1035, 1156
SfcI	CTRYAG	1 cut(s)	1083
SinI	GGWCC	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SpeI	ACTAGT	1 cut(s)	359
Sse9I	AATT	9 cut(s)	308, 346, 457, 658, 666, 749, 819, 982, 1048
SseBI	AGGCCT	1 cut(s)	642
SsiI	CCGC	6 cut(s)	384, 746, 877, 886, 972, 1178
SspMI	CTAG	1 cut(s)	360
StuI	AGGCCT	1 cut(s)	642
StyD4I	CCNGG	4 cut(s)	77, 153, 841, 906
TaiI	ACGT	3 cut(s)	258, 321, 441
TaqI	TCGA	5 cut(s)	51, 243, 339, 582, 1044
TasI	AATT	9 cut(s)	308, 346, 457, 658, 666, 749, 819, 982, 1048
TatI	WGTACW	1 cut(s)	631
TauI	GCSGC	2 cut(s)	386, 1181
TfiI	GAWTC	4 cut(s)	147, 202, 676, 932
Tru1I	TTAA	2 cut(s)	180, 575
Tru9I	TTAA	2 cut(s)	180, 575
TscAI	CASTG	5 cut(s)	868, 974, 1018, 1030, 1163
TseFI	GTSAC	1 cut(s)	872
TseI	GCWGC	2 cut(s)	74, 396
Tsp45I	GTSAC	1 cut(s)	872
TspDTI	ATGAA	5 cut(s)	41, 209, 677, 914, 942
TspGWI	ACGGA	1 cut(s)	950
TspRI	CASTG	5 cut(s)	868, 974, 1018, 1030, 1163
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	3 cut(s)	308, 666, 819
XmiI	GTMKAC	1 cut(s)	598
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.