Rmu_sc0001035.1_g000069

Polysaccharide biosynthesis

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001035.1
N/A
Physical Location & Seq
Forward (+)
334429 .. 334755
327 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
atgaagtatcggagcactctaacatcggagaagatgggtctcctagcagcagttttggttttctttatcggtgctgctttgttcatctccagcctcaccgaaactggaaactcattattttgctctttacccatttttggcaaggacgataatacccccacagagattcgactacaggcaattctccataacgccacatctcgaacaacgccgcagcagtccaaggatgagattagcgtccctcaagttcaccatggcccttgttcttccaccggttgcagaaatacaattacttggctaagaagcaagaccaagttaggggtgtag

Protein Analysis

108

Amino Acids

11.78

Weight (kDa)

9.26

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 137, 318
AgeI ACCGGT 1 cut(s) 272
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 44
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 3 cut(s) 47, 74, 214
AsiGI ACCGGT 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 88, 242
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 59, 61, 226
BccI CCATC 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 173
BisI GCNGC 4 cut(s) 48, 75, 212, 215
BlsI GCNGC 4 cut(s) 49, 76, 213, 216
BmgT120I GGNCC 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 222, 253
BsaWI WCCGGW 1 cut(s) 272
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 318
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 109
BseDI CCNNGG 2 cut(s) 222, 253
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 2 cut(s) 137, 318
BseNI ACTGG 1 cut(s) 109
BseXI GCAGC 3 cut(s) 59, 61, 226
BshFI GGCC 1 cut(s) 258
BshTI ACCGGT 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 137, 318
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 1 cut(s) 258
Bso31I GGTCTC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 17
Bsp19I CCATGG 1 cut(s) 253
BspACI CCGC 1 cut(s) 212
BspANI GGCC 1 cut(s) 258
BspTNI GGTCTC 1 cut(s) 44
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 1 cut(s) 109
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 222, 253
BssT1I CCWWGG 2 cut(s) 222, 253
BstDEI CTNAG 1 cut(s) 299
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 232
BstMAI GTCTC 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 173
BstV1I GCAGC 3 cut(s) 59, 61, 226
BsuRI GGCC 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 1 cut(s) 232
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 1 cut(s) 226
CspAI ACCGGT 1 cut(s) 272
CviAII CATG 1 cut(s) 254
CviJI RGCY 3 cut(s) 93, 258, 298
CviKI_1 RGCY 3 cut(s) 93, 258, 298
DdeI CTNAG 1 cut(s) 299
Eco130I CCWWGG 2 cut(s) 222, 253
Eco31I GGTCTC 1 cut(s) 44
EcoT14I CCWWGG 2 cut(s) 222, 253
ErhI CCWWGG 2 cut(s) 222, 253
FaeI CATG 1 cut(s) 257
FaiI YATR 2 cut(s) 189, 255
FaqI GGGAC 1 cut(s) 224
FatI CATG 1 cut(s) 253
Fnu4HI GCNGC 4 cut(s) 48, 75, 212, 215
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 4 cut(s) 48, 75, 212, 215
FspBI CTAG 1 cut(s) 44
GluI GCNGC 4 cut(s) 48, 75, 212, 215
GsuI CTGGAG 1 cut(s) 73
HaeIII GGCC 1 cut(s) 258
HapII CCGG 1 cut(s) 273
HgaI GACGC 1 cut(s) 226
Hin1II CATG 1 cut(s) 257
HinfI GANTC 1 cut(s) 166
HpaII CCGG 1 cut(s) 273
HphI GGTGA 2 cut(s) 88, 242
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 12, 28
Hpy188III TCNNGA 1 cut(s) 201
Hpy8I GTNNAC 1 cut(s) 250
HpyCH4V TGCA 1 cut(s) 279
HpyF3I CTNAG 1 cut(s) 299
Hsp92II CATG 1 cut(s) 257
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 4 cut(s) 90, 103, 161, 286
Lsp1109I GCAGC 3 cut(s) 59, 61, 226
MaeI CTAG 1 cut(s) 44
MboII GAAGA 2 cut(s) 43, 258
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 2 cut(s) 180, 288
MnlI CCTC 2 cut(s) 104, 252
MspI CCGG 1 cut(s) 273
NcoI CCATGG 1 cut(s) 253
NlaIII CATG 1 cut(s) 257
PfeI GAWTC 1 cut(s) 166
PinAI ACCGGT 1 cut(s) 272
PkrI GCNGC 4 cut(s) 49, 76, 213, 216
PspPI GGNCC 1 cut(s) 257
SatI GCNGC 4 cut(s) 48, 75, 212, 215
Sau96I GGNCC 1 cut(s) 257
SduI GDGCHC 1 cut(s) 17
SfcI CTRYAG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
Sse9I AATT 2 cut(s) 180, 288
SsiI CCGC 1 cut(s) 212
SspMI CTAG 1 cut(s) 44
StyI CCWWGG 2 cut(s) 222, 253
TaqI TCGA 2 cut(s) 169, 202
TasI AATT 2 cut(s) 180, 288
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 1 cut(s) 166
TseI GCWGC 3 cut(s) 47, 74, 214
TspDTI ATGAA 2 cut(s) 17, 73
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.