Rmu_sc0001051.1_g000003

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001051.1
N/A
Physical Location & Seq
Reverse (-)
8980 .. 13022
4043 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 660 bp
atgggttttgatgatttcagagttgtggaacagatggaagtatatgaagggagagaaatggcgtcggagaaccccatgagggaaatcaaggtccagaagctcgtcctcaacatcttcgtcggtgagagcggcgatcgtctcaccaaggtcttagaacaactcagcttgaagaccagccctactatcgaagacatcaagaacatccttggtgccgaagagattaggtggagaacgaaaacgaaagatctggaggtagatttgtggctatcaagaaagggcatccctaaagtactgaaggaactgatcatgcaaactgtggaacgaagaatcgaagaaaacaaagatgttcaggtggagaacatcctctctctacttcccatgagacacagcaattttatcaaacgctatctgcgactggctacacttaagaaaattgacatcactctttgcatctatagcttctatgtggcatattcattgtatgcagcaacttgcttgccagttacatttttcgctcttgcacagctgccgctctactttaatctcatgaaggccatcatcagaaaggtgaagaacttgagagctgatgaacttgaagaagacaagaaagaagctttgccttatttgtttctcacagccatgtttattggatcattatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

219

Amino Acids

25.56

Weight (kDa)

8.39

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L5 PF00281 24 - 55 4.3e-07 Ribosomal protein L5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AccBSI CCGCTC 2 cut(s) 129, 532
AciI CCGC 2 cut(s) 129, 530
AclWI GGATC 1 cut(s) 658
AcuI CTGAAG 1 cut(s) 314
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 1 cut(s) 79
AflII CTTAAG 1 cut(s) 425
AgsI TTSAA 2 cut(s) 169, 596
AluBI AGCT 6 cut(s) 100, 165, 459, 526, 584, 614
AluI AGCT 6 cut(s) 100, 165, 459, 526, 584, 614
Alw26I GTCTC 2 cut(s) 143, 376
AlwI GGATC 1 cut(s) 658
AoxI GGCC 1 cut(s) 552
ApeKI GCWGC 2 cut(s) 485, 526
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 3 cut(s) 133, 134, 580
AvaII GGWCC 1 cut(s) 91
BanI GGYRCC 1 cut(s) 209
BbsI GAAGAC 3 cut(s) 176, 195, 606
BbvI GCAGC 2 cut(s) 497, 513
BccI CCATC 2 cut(s) 28, 563
BclI TGATCA 1 cut(s) 303
BcoDI GTCTC 2 cut(s) 143, 376
BfmI CTRYAG 1 cut(s) 454
BfrI CTTAAG 1 cut(s) 425
BglII AGATCT 1 cut(s) 244
BisI GCNGC 4 cut(s) 130, 486, 527, 530
BlsI GCNGC 4 cut(s) 131, 487, 528, 531
BmcAI AGTACT 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 211
BmsI GCATC 2 cut(s) 288, 459
BpiI GAAGAC 3 cut(s) 176, 195, 606
BpmI CTGGAG 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 598
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 2 cut(s) 144, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 420, 500
BseDI CCNNGG 2 cut(s) 144, 205
BseGI GGATG 3 cut(s) 201, 279, 360
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 2 cut(s) 420, 500
BseXI GCAGC 2 cut(s) 497, 513
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 1 cut(s) 554
BshNI GGYRCC 1 cut(s) 209
BsiEI CGRYCG 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 143, 376
BsmBI CGTCTC 1 cut(s) 143
BsnI GGCC 1 cut(s) 554
Bsp143I GATC 4 cut(s) 133, 244, 303, 650
BspACI CCGC 2 cut(s) 129, 530
BspANI GGCC 1 cut(s) 554
BspCNI CTCAG 1 cut(s) 174
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 1 cut(s) 211
BspPI GGATC 1 cut(s) 658
BspT107I GGYRCC 1 cut(s) 209
BspTI CTTAAG 1 cut(s) 425
BsrBI CCGCTC 2 cut(s) 129, 532
BsrI ACTGG 2 cut(s) 420, 500
BssECI CCNNGG 2 cut(s) 144, 205
BssMI GATC 4 cut(s) 133, 244, 303, 650
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 2 cut(s) 144, 205
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 210
BstACI GRCGYC 1 cut(s) 62
BstAFI CTTAAG 1 cut(s) 425
BstC8I GCNNGC 1 cut(s) 497
BstDEI CTNAG 2 cut(s) 151, 161
BstF5I GGATG 3 cut(s) 201, 279, 360
BstKTI GATC 4 cut(s) 136, 247, 306, 653
BstMAI GTCTC 2 cut(s) 143, 376
BstMBI GATC 4 cut(s) 133, 244, 303, 650
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 456
BstSFI CTRYAG 1 cut(s) 454
BstV1I GCAGC 2 cut(s) 497, 513
BstV2I GAAGAC 3 cut(s) 176, 195, 606
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 1 cut(s) 554
BtsCI GGATG 3 cut(s) 201, 279, 360
Cac8I GCNNGC 1 cut(s) 497
CciI TCATGA 1 cut(s) 546
Cfr13I GGNCC 1 cut(s) 91
CseI GACGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 290
CviAII CATG 5 cut(s) 76, 307, 379, 547, 640
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 2 cut(s) 151, 161
DpnI GATC 4 cut(s) 135, 246, 305, 652
DpnII GATC 4 cut(s) 133, 244, 303, 650
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 2 cut(s) 144, 205
Eco47I GGWCC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 314
EcoT14I CCWWGG 2 cut(s) 144, 205
ErhI CCWWGG 2 cut(s) 144, 205
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 5 cut(s) 79, 310, 382, 550, 643
FatI CATG 5 cut(s) 75, 306, 378, 546, 639
FbaI TGATCA 1 cut(s) 303
Fnu4HI GCNGC 4 cut(s) 130, 486, 527, 530
FokI GGATG 3 cut(s) 188, 266, 347
Fsp4HI GCNGC 4 cut(s) 130, 486, 527, 530
GluI GCNGC 4 cut(s) 130, 486, 527, 530
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 1 cut(s) 554
HgaI GACGC 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 5 cut(s) 79, 310, 382, 550, 643
HindIII AAGCTT 1 cut(s) 612
HinfI GANTC 1 cut(s) 327
HphI GGTGA 3 cut(s) 133, 134, 580
Hpy188I TCNGA 3 cut(s) 20, 67, 563
Hpy188III TCNNGA 5 cut(s) 94, 196, 248, 270, 547
Hpy99I CGWCG 2 cut(s) 67, 122
HpyAV CCTTC 3 cut(s) 41, 289, 544
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 4 cut(s) 310, 450, 485, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 456
HpyF3I CTNAG 2 cut(s) 151, 161
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 5 cut(s) 79, 310, 382, 550, 643
Ksp22I TGATCA 1 cut(s) 303
Kzo9I GATC 4 cut(s) 133, 244, 303, 650
LpnPI CCDG 6 cut(s) 107, 187, 233, 335, 401, 513
Lsp1109I GCAGC 2 cut(s) 497, 513
LweI GCATC 2 cut(s) 288, 459
MaeIII GTNAC 1 cut(s) 502
MalI GATC 4 cut(s) 135, 246, 305, 652
MbiI CCGCTC 2 cut(s) 129, 532
MboI GATC 4 cut(s) 133, 244, 303, 650
MboII GAAGA 9 cut(s) 106, 181, 200, 227, 336, 344, 583, 608, 611
MflI RGATCY 1 cut(s) 244
MluCI AATT 2 cut(s) 391, 432
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 4 cut(s) 72, 116, 244, 374
MseI TTAA 2 cut(s) 426, 540
MslI CAYNNNNRTG 1 cut(s) 638
MspA1I CMGCKG 1 cut(s) 526
MspCI CTTAAG 1 cut(s) 425
MwoI GCNNNNNNNGC 1 cut(s) 456
NdeII GATC 4 cut(s) 133, 244, 303, 650
NlaIII CATG 5 cut(s) 79, 310, 382, 550, 643
NlaIV GGNNCC 1 cut(s) 211
PagI TCATGA 1 cut(s) 546
PcsI WCGNNNNNNNCGW 1 cut(s) 409
PfeI GAWTC 1 cut(s) 327
PkrI GCNGC 4 cut(s) 131, 487, 528, 531
Ple19I CGATCG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 91
PsuI RGATCY 1 cut(s) 244
PvuI CGATCG 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 526
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 638
SaqAI TTAA 2 cut(s) 426, 540
SatI GCNGC 4 cut(s) 130, 486, 527, 530
Sau3AI GATC 4 cut(s) 133, 244, 303, 650
Sau96I GGNCC 1 cut(s) 91
ScaI AGTACT 1 cut(s) 291
SfaNI GCATC 2 cut(s) 288, 459
SfcI CTRYAG 1 cut(s) 454
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 638
SmlI CTYRAG 2 cut(s) 425, 577
SmoI CTYRAG 2 cut(s) 425, 577
Sse9I AATT 2 cut(s) 391, 432
SsiI CCGC 2 cut(s) 129, 530
StyI CCWWGG 2 cut(s) 144, 205
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 2 cut(s) 186, 330
TasI AATT 2 cut(s) 391, 432
TatI WGTACW 1 cut(s) 289
TauI GCSGC 2 cut(s) 132, 532
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 2 cut(s) 426, 540
Tru9I TTAA 2 cut(s) 426, 540
TseI GCWGC 2 cut(s) 485, 526
TspDTI ATGAA 4 cut(s) 60, 465, 563, 603
Vha464I CTTAAG 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 91
ZrmI AGTACT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.