Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001058.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3006

Gene Structure 3006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 296 bp

atccaagaacaggggaggtgataaccagagtggcagaaggagataaggaagacgtggatttcgccgtgaaagctgcacgcgccgcctttgaccatggcccctggcctcgcttacccggcgctgacttgggtgaagaggtgcccagatcactagatctaactattctgctgccgattgggtaccgctgcagccggagcccaaagttggagttgctaacagtgatggatgcttctttggctgaggagctgagtgcgataactgataaggaacaagctagagaggataagattggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

97

Amino Acids

10.59

Weight (kDa)

4.73

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	179
AccB1I	GGYRCC	2 cut(s)	138, 179
AccII	CGCG	1 cut(s)	80
AciI	CCGC	2 cut(s)	83, 183
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	2 cut(s)	10, 204
AjiI	CACGTC	1 cut(s)	54
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	3 cut(s)	73, 246, 274
AluI	AGCT	3 cut(s)	73, 246, 274
AoxI	GGCC	2 cut(s)	96, 103
ApeKI	GCWGC	4 cut(s)	73, 168, 185, 188
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
Asp718I	GGTACC	1 cut(s)	179
AspLEI	GCGC	2 cut(s)	82, 121
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	30, 142
BaeGI	GKGCMC	1 cut(s)	143
BanI	GGYRCC	2 cut(s)	138, 179
BanII	GRGCYC	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	56
BbvCI	CCTCAGC	1 cut(s)	239
BbvI	GCAGC	4 cut(s)	60, 155, 172, 200
BccI	CCATC	1 cut(s)	216
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	116
BfaI	CTAG	2 cut(s)	151, 275
BfmI	CTRYAG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	122
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	5 cut(s)	74, 83, 169, 186, 189
BlsI	GCNGC	5 cut(s)	75, 84, 170, 187, 190
Bme1390I	CCNGG	2 cut(s)	102, 116
BmgBI	CACGTC	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	4 cut(s)	99, 140, 181, 196
BmrFI	CCNGG	2 cut(s)	102, 116
BmsI	GCATC	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	93, 100
Bsc4I	CCNNNNNNNGG	2 cut(s)	10, 204
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	93, 100
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	2 cut(s)	10, 204
BseMII	CTCAG	2 cut(s)	230, 238
BseRI	GAGGAG	1 cut(s)	256
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	4 cut(s)	60, 155, 172, 200
BsgI	GTGCAG	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	98, 105
BshNI	GGYRCC	2 cut(s)	138, 179
BsiSI	CCGG	2 cut(s)	116, 192
BslI	CCNNNNNNNGG	2 cut(s)	10, 204
BsnI	GGCC	2 cut(s)	98, 105
Bsp1286I	GDGCHC	2 cut(s)	143, 199
Bsp143I	GATC	2 cut(s)	145, 153
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	2 cut(s)	83, 183
BspANI	GGCC	2 cut(s)	98, 105
BspCNI	CTCAG	2 cut(s)	231, 239
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	4 cut(s)	99, 140, 181, 196
BspMAI	CTGCAG	1 cut(s)	190
BspT107I	GGYRCC	2 cut(s)	138, 179
BssECI	CCNNGG	2 cut(s)	93, 100
BssMI	GATC	2 cut(s)	145, 153
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	239, 247
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	2 cut(s)	82, 121
BstKTI	GATC	2 cut(s)	148, 156
BstMBI	GATC	2 cut(s)	145, 153
BstMWI	GCNNNNNNNGC	6 cut(s)	70, 79, 82, 116, 194, 235
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	2 cut(s)	100, 114
BstSFI	CTRYAG	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	143
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	4 cut(s)	60, 155, 172, 200
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	98, 105
BtgI	CCRYGG	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	78
CfoI	GCGC	2 cut(s)	82, 121
Cfr13I	GGNCC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	8 cut(s)	73, 98, 105, 191, 197, 238, 246, 274
CviKI_1	RGCY	8 cut(s)	73, 98, 105, 191, 197, 238, 246, 274
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	2 cut(s)	239, 247
DpnI	GATC	2 cut(s)	147, 155
DpnII	GATC	2 cut(s)	145, 153
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	1 cut(s)	97
FaiI	YATR	1 cut(s)	95
FatI	CATG	1 cut(s)	93
Fnu4HI	GCNGC	5 cut(s)	74, 83, 169, 186, 189
FokI	GGATG	1 cut(s)	238
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	5 cut(s)	74, 83, 169, 186, 189
FspBI	CTAG	2 cut(s)	151, 275
GlaI	GCGC	2 cut(s)	81, 120
GluI	GCNGC	5 cut(s)	74, 83, 169, 186, 189
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	98, 105
HapII	CCGG	2 cut(s)	116, 192
HhaI	GCGC	2 cut(s)	82, 121
Hin1II	CATG	1 cut(s)	97
Hin6I	GCGC	2 cut(s)	80, 119
HinP1I	GCGC	2 cut(s)	80, 119
HpaII	CCGG	2 cut(s)	116, 192
HphI	GGTGA	2 cut(s)	30, 142
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	76, 188
HpyF10VI	GCNNNNNNNGC	6 cut(s)	70, 79, 82, 116, 194, 235
HpyF3I	CTNAG	2 cut(s)	239, 247
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	97
HspAI	GCGC	2 cut(s)	80, 119
KpnI	GGTACC	1 cut(s)	183
Kzo9I	GATC	2 cut(s)	145, 153
LmnI	GCTCC	2 cut(s)	194, 243
LpnPI	CCDG	6 cut(s)	39, 87, 114, 129, 156, 205
Lsp1109I	GCAGC	4 cut(s)	60, 155, 172, 200
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	2 cut(s)	151, 275
MaeII	ACGT	1 cut(s)	53
MalI	GATC	2 cut(s)	147, 155
MboI	GATC	2 cut(s)	145, 153
MboII	GAAGA	2 cut(s)	61, 145
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	2 cut(s)	143, 199
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	5 cut(s)	9, 116, 129, 234, 273
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	2 cut(s)	116, 192
MspR9I	CCNGG	2 cut(s)	102, 116
MvaI	CCWGG	1 cut(s)	102
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	6 cut(s)	70, 79, 82, 116, 194, 235
NciI	CCSGG	1 cut(s)	116
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	2 cut(s)	145, 153
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	4 cut(s)	99, 140, 181, 196
PkrI	GCNGC	5 cut(s)	75, 84, 170, 187, 190
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	4 cut(s)	99, 140, 181, 196
PspPI	GGNCC	1 cut(s)	97
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	153
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SatI	GCNGC	5 cut(s)	74, 83, 169, 186, 189
Sau3AI	GATC	2 cut(s)	145, 153
Sau96I	GGNCC	1 cut(s)	97
ScrFI	CCNGG	2 cut(s)	102, 116
SduI	GDGCHC	2 cut(s)	143, 199
SetI	ASST	6 cut(s)	20, 56, 75, 140, 248, 276
SfaNI	GCATC	1 cut(s)	216
SfcI	CTRYAG	1 cut(s)	186
SsiI	CCGC	2 cut(s)	83, 183
SspMI	CTAG	2 cut(s)	151, 275
StyD4I	CCNGG	2 cut(s)	100, 114
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	219
TaiI	ACGT	1 cut(s)	56
TauI	GCSGC	1 cut(s)	85
TscAI	CASTG	1 cut(s)	224
TseI	GCWGC	4 cut(s)	73, 168, 185, 188
TspRI	CASTG	1 cut(s)	224
XspI	CTAG	2 cut(s)	151, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.