Rmu_sc0001069.1_g000014

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001069.1
N/A
Physical Location & Seq
Forward (+)
51610 .. 54989
3380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001069.1_g000014.1.cds

Sequence Viewer

Length: 429 bp
atgctgcagggggatggcggcgctagccaagggtggccggatatgggggtgaacggcgccgtgaggcgcagggactcattcggggcagcagacttgcagcggtgctgcagggatgcgtgcgcaggggcaggcacgcaggtgaggctagcgtgggctaggagctacggtgatgaagaagatttcggctcatatattgaagatcaactgttgagatgcttccacgttggtctgctttgcgtggaagaaaaggcagttgatcggcccaccatgtctgatgtcatatctatgctaacaaatgaagggatgtcactacctgcacctacaaaaccagcattttgtacgggaagaaaagtcgttggggatggtaaagatggaaatcgatcagaatcagtaaatgatatatcggattatgaatttgagggacgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

142

Amino Acids

15.38

Weight (kDa)

4.68

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 127
Acc16I TGCGCA 1 cut(s) 121
Acc36I ACCTGC 2 cut(s) 127, 322
AccB1I GGYRCC 1 cut(s) 56
AciI CCGC 2 cut(s) 18, 100
AcoI YGGCCR 1 cut(s) 35
AcsI RAATTY 1 cut(s) 413
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 197
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
AoxI GGCC 2 cut(s) 35, 260
ApeKI GCWGC 4 cut(s) 4, 86, 97, 105
ApoI RAATTY 1 cut(s) 413
AspLEI GCGC 4 cut(s) 23, 59, 69, 122
AspS9I GGNCC 1 cut(s) 261
AsuHPI GGTGA 3 cut(s) 61, 151, 179
AsuNHI GCTAGC 2 cut(s) 23, 145
BanI GGYRCC 1 cut(s) 56
BbvI GCAGC 3 cut(s) 92, 98, 109
BccI CCATC 3 cut(s) 8, 356, 365
BceAI ACGGC 2 cut(s) 44, 70
BfaI CTAG 3 cut(s) 24, 146, 156
BfmI CTRYAG 2 cut(s) 5, 106
BfoI RGCGCY 2 cut(s) 24, 60
BfuAI ACCTGC 2 cut(s) 127, 322
BisI GCNGC 5 cut(s) 5, 19, 87, 98, 106
BlsI GCNGC 5 cut(s) 6, 20, 88, 99, 107
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 58
BmsI GCATC 2 cut(s) 103, 203
BmtI GCTAGC 2 cut(s) 27, 149
Bsa29I ATCGAT 1 cut(s) 379
BsaBI GATNNNNATC 2 cut(s) 375, 385
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse8I GATNNNNATC 2 cut(s) 375, 385
BseCI ATCGAT 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 4 cut(s) 19, 118, 309, 367
BseJI GATNNNNATC 2 cut(s) 375, 385
BseLI CCNNNNNNNGG 1 cut(s) 44
BseXI GCAGC 3 cut(s) 92, 98, 109
BsgI GTGCAG 1 cut(s) 300
BshFI GGCC 2 cut(s) 37, 262
BshNI GGYRCC 1 cut(s) 56
BshVI ATCGAT 1 cut(s) 379
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 2 cut(s) 37, 262
Bsp143I GATC 3 cut(s) 199, 256, 380
BspACI CCGC 2 cut(s) 18, 100
BspANI GGCC 2 cut(s) 37, 262
BspDI ATCGAT 1 cut(s) 379
BspLI GGNNCC 1 cut(s) 58
BspMAI CTGCAG 2 cut(s) 9, 110
BspMI ACCTGC 2 cut(s) 127, 322
BspOI GCTAGC 2 cut(s) 27, 149
BspT107I GGYRCC 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 3 cut(s) 199, 256, 380
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 28
Bst4CI ACNGT 2 cut(s) 167, 207
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 5 cut(s) 25, 118, 130, 134, 147
BstF5I GGATG 4 cut(s) 19, 118, 309, 367
BstH2I RGCGCY 2 cut(s) 24, 60
BstHHI GCGC 4 cut(s) 23, 59, 69, 122
BstKTI GATC 3 cut(s) 202, 259, 383
BstMBI GATC 3 cut(s) 199, 256, 380
BstMWI GCNNNNNNNGC 2 cut(s) 24, 142
BstSFI CTRYAG 2 cut(s) 5, 106
BstV1I GCAGC 3 cut(s) 92, 98, 109
Bsu15I ATCGAT 1 cut(s) 379
BsuRI GGCC 2 cut(s) 37, 262
BsuTUI ATCGAT 1 cut(s) 379
BtsCI GGATG 4 cut(s) 19, 118, 309, 367
BveI ACCTGC 2 cut(s) 127, 322
Cac8I GCNNGC 5 cut(s) 25, 118, 130, 134, 147
CfoI GCGC 4 cut(s) 23, 59, 69, 122
Cfr13I GGNCC 1 cut(s) 261
ClaI ATCGAT 1 cut(s) 379
Csp6I GTAC 1 cut(s) 339
CviAII CATG 1 cut(s) 268
CviJI RGCY 7 cut(s) 27, 37, 145, 155, 162, 186, 262
CviKI_1 RGCY 7 cut(s) 27, 37, 145, 155, 162, 186, 262
CviQI GTAC 1 cut(s) 339
DinI GGCGCC 1 cut(s) 58
DpnI GATC 3 cut(s) 201, 258, 382
DpnII GATC 3 cut(s) 199, 256, 380
EaeI YGGCCR 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 28
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 1 cut(s) 271
FaiI YATR 8 cut(s) 44, 190, 192, 269, 281, 287, 401, 411
FaqI GGGAC 1 cut(s) 86
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 5 cut(s) 5, 19, 87, 98, 106
FokI GGATG 4 cut(s) 26, 125, 316, 374
Fsp4HI GCNGC 5 cut(s) 5, 19, 87, 98, 106
FspBI CTAG 3 cut(s) 24, 146, 156
FspI TGCGCA 1 cut(s) 121
GlaI GCGC 4 cut(s) 22, 58, 68, 121
GluI GCNGC 5 cut(s) 5, 19, 87, 98, 106
HaeII RGCGCY 2 cut(s) 24, 60
HaeIII GGCC 2 cut(s) 37, 262
HapII CCGG 1 cut(s) 38
HhaI GCGC 4 cut(s) 23, 59, 69, 122
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 4 cut(s) 21, 57, 67, 120
HinP1I GCGC 4 cut(s) 21, 57, 67, 120
HinfI GANTC 2 cut(s) 74, 386
HpaII CCGG 1 cut(s) 38
HphI GGTGA 3 cut(s) 61, 151, 179
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 3 cut(s) 274, 385, 406
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 2 cut(s) 167, 207
HpyCH4IV ACGT 2 cut(s) 222, 424
HpyCH4V TGCA 4 cut(s) 7, 97, 108, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 142
HpySE526I ACGT 2 cut(s) 222, 424
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 4 cut(s) 21, 57, 67, 120
KasI GGCGCC 1 cut(s) 56
Kzo9I GATC 3 cut(s) 199, 256, 380
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 8 cut(s) 51, 55, 94, 108, 114, 122, 327, 342
Lsp1109I GCAGC 3 cut(s) 92, 98, 109
LweI GCATC 2 cut(s) 103, 203
MaeI CTAG 3 cut(s) 24, 146, 156
MaeII ACGT 2 cut(s) 222, 424
MaeIII GTNAC 1 cut(s) 306
MalI GATC 3 cut(s) 201, 258, 382
MboI GATC 3 cut(s) 199, 256, 380
MboII GAAGA 5 cut(s) 185, 188, 209, 254, 357
MluCI AATT 1 cut(s) 413
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 3 cut(s) 57, 135, 412
MseI TTAA 1 cut(s) 427
MslI CAYNNNNRTG 2 cut(s) 137, 284
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 24, 142
NarI GGCGCC 1 cut(s) 57
NdeII GATC 3 cut(s) 199, 256, 380
NheI GCTAGC 2 cut(s) 23, 145
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 306
NsbI TGCGCA 1 cut(s) 121
OliI CACNNNNGTG 1 cut(s) 137
PaqCI CACCTGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 5 cut(s) 6, 20, 88, 99, 107
PleI GAGTC 1 cut(s) 68
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 261
PstI CTGCAG 2 cut(s) 9, 110
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
RseI CAYNNNNRTG 2 cut(s) 137, 284
SaqAI TTAA 1 cut(s) 427
SatI GCNGC 5 cut(s) 5, 19, 87, 98, 106
Sau3AI GATC 3 cut(s) 199, 256, 380
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 1 cut(s) 68
SetI ASST 6 cut(s) 141, 164, 225, 316, 322, 427
SfaNI GCATC 2 cut(s) 103, 203
SfcI CTRYAG 2 cut(s) 5, 106
SfoI GGCGCC 1 cut(s) 58
SmiMI CAYNNNNRTG 2 cut(s) 137, 284
Sse9I AATT 1 cut(s) 413
SsiI CCGC 2 cut(s) 18, 100
SspDI GGCGCC 1 cut(s) 56
SspMI CTAG 3 cut(s) 24, 146, 156
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 2 cut(s) 167, 207
TaiI ACGT 2 cut(s) 225, 427
TaqI TCGA 1 cut(s) 379
TasI AATT 1 cut(s) 413
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 1 cut(s) 427
Tru9I TTAA 1 cut(s) 427
TseFI GTSAC 1 cut(s) 306
TseI GCWGC 4 cut(s) 4, 86, 97, 105
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 3 cut(s) 186, 312, 426
XapI RAATTY 1 cut(s) 413
XspI CTAG 3 cut(s) 24, 146, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.