Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001089.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

96729 .. 97939

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atggggtttataatggagtttgctgagaatctggtgctgaggctaatggaggaccctaaggagcgagataggaaatttagggagcacgtgtatgcggtgaaggatcgatgtgagaagacaaaagagatgtgggccttacctctccggccttatggattagtcaggttgaaggcaggagggacccctatgatgaccttctccagcacagccgcgacactgacattggcaaatctaaatgagtgctacaagcggagctctctaaattgcgttgcagaaatgttgtttggtgttagatgcttttatcaagactggtctctgcttgttaataagagtccatgtcactgttgtgttgtggaagaattttatcctttcgatgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDUFB11

Protein Analysis

126

Amino Acids

14.68

Weight (kDa)

7.55

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUFB11	PF17250	1 - 54	2.4e-29	NADH-ubiquinone oxidoreductase 11 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AccII	CGCG	1 cut(s)	212
AciI	CCGC	3 cut(s)	95, 210, 250
AclWI	GGATC	1 cut(s)	111
AcsI	RAATTY	2 cut(s)	74, 359
AcvI	CACGTG	1 cut(s)	88
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	2 cut(s)	267, 299
AleI	CACNNNNGTG	1 cut(s)	345
AluBI	AGCT	1 cut(s)	255
AluI	AGCT	1 cut(s)	255
Alw21I	GWGCWC	2 cut(s)	87, 257
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	111
AoxI	GGCC	2 cut(s)	132, 146
ApoI	RAATTY	2 cut(s)	74, 359
AspS9I	GGNCC	3 cut(s)	52, 132, 180
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	2 cut(s)	52, 180
AxyI	CCTNAGG	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	257
BbrPI	CACGTG	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	122
Bbv12I	GWGCWC	2 cut(s)	87, 257
BbvCI	CCTCAGC	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	318
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme18I	GGWCC	2 cut(s)	52, 180
BmgT120I	GGNCC	3 cut(s)	52, 132, 180
BmiI	GGNNCC	3 cut(s)	54, 181, 182
BmsI	GCATC	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	184
Bpu10I	CCTNAGC	1 cut(s)	38
Bsa29I	ATCGAT	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse1I	ACTGG	1 cut(s)	314
Bse21I	CCTNAGG	1 cut(s)	57
BseCI	ATCGAT	1 cut(s)	106
BseMII	CTCAG	2 cut(s)	15, 29
BseNI	ACTGG	1 cut(s)	314
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	134, 148
BshVI	ATCGAT	1 cut(s)	106
BsiHKAI	GWGCWC	2 cut(s)	87, 257
BsiSI	CCGG	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	134, 148
Bso31I	GGTCTC	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	87, 257
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	3 cut(s)	95, 210, 250
BspANI	GGCC	2 cut(s)	134, 148
BspCNI	CTCAG	2 cut(s)	16, 30
BspDI	ATCGAT	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	3 cut(s)	54, 181, 182
BspPI	GGATC	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	314
BssMI	GATC	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	88
BstDEI	CTNAG	3 cut(s)	24, 38, 57
BstFNI	CGCG	1 cut(s)	212
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	103
BstUI	CGCG	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	122
Bsu15I	ATCGAT	1 cut(s)	106
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	134, 148
BsuTUI	ATCGAT	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	215, 340
Cfr13I	GGNCC	3 cut(s)	52, 132, 180
ClaI	ATCGAT	1 cut(s)	106
CviAII	CATG	1 cut(s)	336
CviJI	RGCY	5 cut(s)	43, 134, 148, 209, 255
CviKI_1	RGCY	5 cut(s)	43, 134, 148, 209, 255
DdeI	CTNAG	3 cut(s)	24, 38, 57
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	257
Eco31I	GGTCTC	1 cut(s)	318
Eco47I	GGWCC	2 cut(s)	52, 180
Eco53kI	GAGCTC	1 cut(s)	255
Eco72I	CACGTG	1 cut(s)	88
Eco81I	CCTNAGG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	255
EcoO109I	RGGNCCY	2 cut(s)	52, 180
EcoT38I	GRGCYC	1 cut(s)	257
FaeI	CATG	1 cut(s)	339
FaiI	YATR	5 cut(s)	11, 93, 153, 188, 337
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	335
Fnu4HI	GCNGC	1 cut(s)	210
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	210
GluI	GCNGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	184
HaeIII	GGCC	2 cut(s)	134, 148
HapII	CCGG	1 cut(s)	145
Hin1II	CATG	1 cut(s)	339
HinfI	GANTC	2 cut(s)	28, 331
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	305
HpyAV	CCTTC	3 cut(s)	94, 163, 205
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	1 cut(s)	272
HpyF3I	CTNAG	3 cut(s)	24, 38, 57
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	339
KflI	GGGWCCC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	3 cut(s)	61, 82, 252
LpnPI	CCDG	6 cut(s)	17, 148, 158, 159, 214, 295
LweI	GCATC	1 cut(s)	284
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	2 cut(s)	127, 368
MhlI	GDGCHC	2 cut(s)	87, 257
MluCI	AATT	3 cut(s)	74, 262, 359
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	4 cut(s)	33, 43, 150, 170
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	2 cut(s)	90, 345
MspI	CCGG	1 cut(s)	145
MvnI	CGCG	1 cut(s)	212
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	339
NlaIV	GGNNCC	3 cut(s)	54, 181, 182
NmuCI	GTSAC	1 cut(s)	338
OliI	CACNNNNGTG	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	1 cut(s)	339
PmaCI	CACGTG	1 cut(s)	88
PmlI	CACGTG	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	339
Ppu21I	YACGTR	1 cut(s)	88
PpuMI	RGGWCCY	2 cut(s)	52, 180
PsiI	TTATAA	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	257
Psp5II	RGGWCCY	2 cut(s)	52, 180
PspCI	CACGTG	1 cut(s)	88
PspN4I	GGNNCC	3 cut(s)	54, 181, 182
PspPI	GGNCC	3 cut(s)	52, 132, 180
PspPPI	RGGWCCY	2 cut(s)	52, 180
RseI	CAYNNNNRTG	2 cut(s)	90, 345
SacI	GAGCTC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	3 cut(s)	52, 132, 180
SchI	GAGTC	1 cut(s)	340
SduI	GDGCHC	2 cut(s)	87, 257
SetI	ASST	5 cut(s)	90, 142, 167, 197, 257
SfaNI	GCATC	1 cut(s)	284
SinI	GGWCC	2 cut(s)	52, 180
SmiMI	CAYNNNNRTG	2 cut(s)	90, 345
Sse9I	AATT	3 cut(s)	74, 262, 359
SsiI	CCGC	3 cut(s)	95, 210, 250
SstI	GAGCTC	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	106, 372
TasI	AATT	3 cut(s)	74, 262, 359
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	222, 347
TseFI	GTSAC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	338
TspRI	CASTG	2 cut(s)	222, 347
VpaK11BI	GGWCC	2 cut(s)	52, 180
XapI	RAATTY	2 cut(s)	74, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.