Rmu_sc0001093.1_g000005

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001093.1
N/A
Physical Location & Seq
Forward (+)
20035 .. 20460
426 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
atgacttatcatatggatgattcgcttcagtacgagtatatgaatgaagaagaccccagaaggctatgggtctcactcgaagaaagatttggcaacgtctgtgactccctgttttctgacctaaaagtgagatggcatagcctccgcttctgtgatttcaagactgttcttgactacaacttggaagcacttcacattaaatccttgatggaattatgtggagaagatatcacagatgcgatgttgatcgagaagactctctctacctttcccatctctactttgatagttgctaagaactatcaaatcgatgttattgcagaacggatcacaaggtttcataagctcattagcgctatgaatgttgctgaaaagcattacaacatccttgtgaagaactataatttgaggtctgtgggaacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

141

Amino Acids

16.63

Weight (kDa)

5.5

Isoelectric Point (pI)

54.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 145
AclWI GGATC 1 cut(s) 335
AcuI CTGAAG 1 cut(s) 11
AfaI GTAC 1 cut(s) 32
AfeI AGCGCT 1 cut(s) 355
AgsI TTSAA 1 cut(s) 160
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 1 cut(s) 346
AluI AGCT 1 cut(s) 346
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 1 cut(s) 335
Aor51HI AGCGCT 1 cut(s) 355
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 356
BbsI GAAGAC 2 cut(s) 57, 260
BccI CCATC 3 cut(s) 126, 202, 281
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BcoDI GTCTC 1 cut(s) 76
BfoI RGCGCY 1 cut(s) 357
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 2 cut(s) 57, 260
Bsa29I ATCGAT 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 245
BseCI ATCGAT 1 cut(s) 309
BseGI GGATG 2 cut(s) 22, 384
BseJI GATNNNNATC 1 cut(s) 245
BshVI ATCGAT 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 76
Bso31I GGTCTC 1 cut(s) 76
Bsp143I GATC 2 cut(s) 246, 327
BspACI CCGC 1 cut(s) 145
BspDI ATCGAT 1 cut(s) 309
BspPI GGATC 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 76
BssMI GATC 2 cut(s) 246, 327
Bst4CI ACNGT 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 22, 384
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 2 cut(s) 249, 330
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 2 cut(s) 246, 327
BstV2I GAAGAC 2 cut(s) 57, 260
Bsu15I ATCGAT 1 cut(s) 309
BsuTUI ATCGAT 1 cut(s) 309
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 2 cut(s) 22, 384
CfoI GCGC 1 cut(s) 356
ClaI ATCGAT 1 cut(s) 309
Csp6I GTAC 1 cut(s) 31
CviJI RGCY 3 cut(s) 64, 141, 346
CviKI_1 RGCY 3 cut(s) 64, 141, 346
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 248, 329
DpnII GATC 2 cut(s) 246, 327
Eco31I GGTCTC 1 cut(s) 76
Eco32I GATATC 1 cut(s) 229
Eco47III AGCGCT 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 11
EcoRV GATATC 1 cut(s) 229
FauNDI CATATG 1 cut(s) 12
FokI GGATG 2 cut(s) 29, 371
GlaI GCGC 1 cut(s) 355
HaeII RGCGCY 1 cut(s) 357
HhaI GCGC 1 cut(s) 356
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HinfI GANTC 3 cut(s) 20, 104, 256
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 3 cut(s) 160, 170, 250
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 320
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 96
HspAI GCGC 1 cut(s) 354
Kzo9I GATC 2 cut(s) 246, 327
LpnPI CCDG 2 cut(s) 70, 122
LweI GCATC 1 cut(s) 226
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 101
MalI GATC 2 cut(s) 248, 329
MboI GATC 2 cut(s) 246, 327
MboII GAAGA 6 cut(s) 59, 62, 92, 236, 265, 406
MluCI AATT 2 cut(s) 212, 403
MlyI GAGTC 2 cut(s) 98, 250
MnlI CCTC 2 cut(s) 152, 402
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 2 cut(s) 15, 389
NdeI CATATG 1 cut(s) 12
NdeII GATC 2 cut(s) 246, 327
NmuCI GTSAC 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 20
PleI GAGTC 2 cut(s) 98, 250
PpsI GAGTC 2 cut(s) 98, 250
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 2 cut(s) 15, 389
SaqAI TTAA 1 cut(s) 198
Sau3AI GATC 2 cut(s) 246, 327
SchI GAGTC 2 cut(s) 98, 250
SetI ASST 6 cut(s) 99, 123, 269, 338, 348, 413
SfaNI GCATC 1 cut(s) 226
SmiMI CAYNNNNRTG 2 cut(s) 15, 389
Sse9I AATT 2 cut(s) 212, 403
SsiI CCGC 1 cut(s) 145
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 99
TaqI TCGA 3 cut(s) 78, 249, 309
TasI AATT 2 cut(s) 212, 403
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 4 cut(s) 56, 60, 329, 374
TspGWI ACGGA 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.