Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001103.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

145522 .. 146712

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgatctccctagatggtgaacatgatcaaaaccttagttcctttcctgttgttcctagtgattttttcgaggatatggagtgttcttggaaaggtcgtataaagagaatccatatagaggaggcctttgcagaagtggaaaaggctgctgaggcgttatccttagcagtcactgaagatttcatgcccatcgtatctagaataaaggctaccacagctccacttggaggcccgaagggagaaatattatatgcgcgggagcatgaagctgtttggtttaaaggaaaacgatttgctccggctgtttgggctggcacccctggggaagaacaaattaaacagcttaaacctgctttagattcaaaaggtagaaaggtcggagaagagtggtttacgacaatgaaagtggaggatgctttaacaaggtgtgcaactttcctgatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032042 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034357 GO:0034641 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIY-YIG MutS_I MutS_V

Protein Analysis

148

Amino Acids

16.57

Weight (kDa)

5.29

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	314
AccII	CGCG	1 cut(s)	256
AciI	CCGC	1 cut(s)	256
AcuI	CTGAAG	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	118, 227
AgsI	TTSAA	1 cut(s)	363
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	3 cut(s)	218, 269, 343
AluI	AGCT	3 cut(s)	218, 269, 343
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	2 cut(s)	123, 229
ApeKI	GCWGC	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	314
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	2 cut(s)	8, 197
BciT130I	CCWGG	1 cut(s)	321
BclI	TGATCA	1 cut(s)	25
BfaI	CTAG	3 cut(s)	11, 57, 198
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	403
Bpu10I	CCTNAGC	2 cut(s)	150, 163
BsaJI	CCNNGG	2 cut(s)	319, 320
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 227
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	319, 320
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	2 cut(s)	118, 227
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	133
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	2 cut(s)	125, 231
BshNI	GGYRCC	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	299
BslI	CCNNNNNNNGG	2 cut(s)	118, 227
BsnI	GGCC	2 cut(s)	125, 231
Bsp143I	GATC	2 cut(s)	3, 25
BspACI	CCGC	1 cut(s)	256
BspANI	GGCC	2 cut(s)	125, 231
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	358
BspT107I	GGYRCC	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	319, 320
BssMI	GATC	2 cut(s)	3, 25
Bst2UI	CCWGG	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	3 cut(s)	35, 150, 163
BstF5I	GGATG	1 cut(s)	418
BstFNI	CGCG	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	2 cut(s)	6, 28
BstMBI	GATC	2 cut(s)	3, 25
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 215, 308
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	125, 231
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	313
CaiI	CAGNNNCTG	1 cut(s)	173
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	230
CspCI	CAANNNNNGTGG	2 cut(s)	387, 422
CviAII	CATG	3 cut(s)	23, 184, 263
CviJI	RGCY	9 cut(s)	125, 146, 209, 218, 231, 269, 302, 311, 343
CviKI_1	RGCY	9 cut(s)	125, 146, 209, 218, 231, 269, 302, 311, 343
DdeI	CTNAG	3 cut(s)	35, 150, 163
DpnI	GATC	2 cut(s)	5, 27
DpnII	GATC	2 cut(s)	3, 25
DraI	TTTAAA	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco147I	AGGCCT	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	319
FaeI	CATG	3 cut(s)	26, 187, 266
FaiI	YATR	9 cut(s)	24, 77, 101, 114, 116, 185, 250, 252, 264
FatI	CATG	3 cut(s)	22, 183, 262
FauI	CCCGC	1 cut(s)	249
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	3 cut(s)	11, 57, 198
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	125, 231
HapII	CCGG	1 cut(s)	299
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	3 cut(s)	26, 187, 266
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	2 cut(s)	108, 359
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	2 cut(s)	20, 393
Hpy188I	TCNGA	1 cut(s)	380
Hpy188III	TCNNGA	2 cut(s)	198, 439
Hpy8I	GTNNAC	2 cut(s)	20, 393
HpyAV	CCTTC	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	131, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 215, 308
HpyF3I	CTNAG	3 cut(s)	35, 150, 163
Hsp92II	CATG	3 cut(s)	26, 187, 266
HspAI	GCGC	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	3, 25
LmnI	GCTCC	3 cut(s)	223, 259, 301
LpnPI	CCDG	6 cut(s)	60, 297, 306, 312, 333, 363
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	3 cut(s)	11, 57, 198
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	5, 27
MboI	GATC	2 cut(s)	3, 25
MboII	GAAGA	3 cut(s)	188, 338, 395
MluCI	AATT	1 cut(s)	333
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	6 cut(s)	64, 112, 115, 145, 221, 403
MseI	TTAA	4 cut(s)	279, 336, 345, 419
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	3 cut(s)	152, 215, 308
NdeII	GATC	2 cut(s)	3, 25
NlaIII	CATG	3 cut(s)	26, 187, 266
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	169
PasI	CCCWGGG	1 cut(s)	320
PceI	AGGCCT	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	108, 359
PkrI	GCNGC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	173
SaqAI	TTAA	4 cut(s)	279, 336, 345, 419
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	3, 25
Sau96I	GGNCC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	9 cut(s)	36, 97, 220, 271, 345, 352, 370, 378, 428
SfaNI	GCATC	1 cut(s)	403
Sse9I	AATT	1 cut(s)	333
SseBI	AGGCCT	1 cut(s)	125
SsiI	CCGC	1 cut(s)	256
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	3 cut(s)	11, 57, 198
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	319
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	333
TfiI	GAWTC	2 cut(s)	108, 359
Tru1I	TTAA	4 cut(s)	279, 336, 345, 419
Tru9I	TTAA	4 cut(s)	279, 336, 345, 419
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	3 cut(s)	172, 279, 416
TspRI	CASTG	1 cut(s)	178
XbaI	TCTAGA	1 cut(s)	197
XspI	CTAG	3 cut(s)	11, 57, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.