Rmu_sc0001122.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001122.1
N/A
Physical Location & Seq
Reverse (-)
17 .. 586
570 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 486 bp
atggctgctaagctagcatcctcgcttgctattgctgagggtaagaaacaggtggatctctggcctacacaaggccaaggtctacggcaatctgaggtgttaatggtggggaagctactcactgctcgagattttaaaatcctgtcctttctagggatgttccgcaatgcatggcggacgaatggatctcttcaggggtacaaccatgctccggtggcactggcttgctatgatggagttacaccggtggaacaggtccctctgaccttggcctcatattggataactctccaaggtattcctcttgctttcagatcagaaagggtgatgactatgattggttacaccttaggggactttcaggagatcgacaagattggaaagaaagccggaaaacttcgcatccgggtagagatcccgttgatcaagccgctgcccttcaaacggtggtactgggtggaggacgaggtcgagttcttgtgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

161

Amino Acids

18.18

Weight (kDa)

9.3

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 82
AciI CCGC 3 cut(s) 163, 175, 431
AclWI GGATC 3 cut(s) 63, 193, 409
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 2 cut(s) 200, 452
AfiI CCNNNNNNNGG 5 cut(s) 71, 153, 211, 279, 444
AgeI ACCGGT 1 cut(s) 244
AgsI TTSAA 1 cut(s) 442
AluBI AGCT 2 cut(s) 13, 115
AluI AGCT 2 cut(s) 13, 115
AlwI GGATC 3 cut(s) 63, 193, 409
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 3 cut(s) 62, 73, 270
ApeKI GCWGC 2 cut(s) 5, 433
AsiGI ACCGGT 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 256
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 1 cut(s) 337
AsuNHI GCTAGC 1 cut(s) 13
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 1 cut(s) 256
AxyI CCTNAGG 1 cut(s) 349
BbvCI CCTCAGC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 420
BccI CCATC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 101
BclI TGATCA 1 cut(s) 423
BcnI CCSGG 1 cut(s) 407
BfaI CTAG 2 cut(s) 14, 152
BisI GCNGC 3 cut(s) 6, 431, 434
BlpI GCTNAGC 1 cut(s) 9
BlsI GCNGC 3 cut(s) 7, 432, 435
Bme1390I CCNGG 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 407
BmrI ACTGGG 1 cut(s) 463
BmsI GCATC 2 cut(s) 26, 411
BmtI GCTAGC 1 cut(s) 17
BmuI ACTGGG 1 cut(s) 463
Bpu10I CCTNAGC 1 cut(s) 36
Bpu1102I GCTNAGC 1 cut(s) 9
BpuMI CCSGG 1 cut(s) 407
BsaJI CCNNGG 3 cut(s) 76, 267, 292
BsaWI WCCGGW 2 cut(s) 211, 244
Bsc4I CCNNNNNNNGG 5 cut(s) 71, 153, 211, 279, 444
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 2 cut(s) 225, 458
Bse21I CCTNAGG 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 172
BseDI CCNNGG 3 cut(s) 76, 267, 292
BseGI GGATG 3 cut(s) 17, 162, 402
BseLI CCNNNNNNNGG 5 cut(s) 71, 153, 211, 279, 444
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 2 cut(s) 27, 84
BseNI ACTGG 2 cut(s) 225, 458
BseXI GCAGC 1 cut(s) 420
BshFI GGCC 3 cut(s) 64, 75, 272
BshTI ACCGGT 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 4 cut(s) 212, 245, 390, 406
BslFI GGGAC 2 cut(s) 242, 368
BslI CCNNNNNNNGG 5 cut(s) 71, 153, 211, 279, 444
BsmFI GGGAC 2 cut(s) 242, 368
BsnI GGCC 3 cut(s) 64, 75, 272
BsoBI CYCGRG 1 cut(s) 126
Bsp143I GATC 6 cut(s) 55, 185, 314, 366, 414, 423
Bsp1720I GCTNAGC 1 cut(s) 9
BspACI CCGC 3 cut(s) 163, 175, 431
BspANI GGCC 3 cut(s) 64, 75, 272
BspCNI CTCAG 2 cut(s) 28, 85
BspLI GGNNCC 1 cut(s) 258
BspOI GCTAGC 1 cut(s) 17
BspPI GGATC 3 cut(s) 63, 193, 409
BsrDI GCAATG 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 244
BsrI ACTGG 2 cut(s) 225, 458
BssAI RCCGGY 1 cut(s) 244
BssECI CCNNGG 3 cut(s) 76, 267, 292
BssMI GATC 6 cut(s) 55, 185, 314, 366, 414, 423
BssT1I CCWWGG 3 cut(s) 76, 267, 292
Bst4CI ACNGT 1 cut(s) 447
Bst6I CTCTTC 1 cut(s) 195
BstC8I GCNNGC 3 cut(s) 15, 27, 226
BstDEI CTNAG 4 cut(s) 9, 36, 93, 349
BstENI CCTNNNNNAGG 1 cut(s) 69
BstF5I GGATG 3 cut(s) 17, 162, 402
BstKTI GATC 6 cut(s) 58, 188, 317, 369, 417, 426
BstMBI GATC 6 cut(s) 55, 185, 314, 366, 414, 423
BstMWI GCNNNNNNNGC 2 cut(s) 14, 215
BstSCI CCNGG 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 420
BstX2I RGATCY 3 cut(s) 55, 185, 414
BstYI RGATCY 3 cut(s) 55, 185, 414
Bsu36I CCTNAGG 1 cut(s) 349
BsuRI GGCC 3 cut(s) 64, 75, 272
BtsCI GGATG 3 cut(s) 17, 162, 402
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 120, 218
Cac8I GCNNGC 3 cut(s) 15, 27, 226
Cfr10I RCCGGY 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 2 cut(s) 199, 451
CspAI ACCGGT 1 cut(s) 244
CviAII CATG 2 cut(s) 171, 206
CviJI RGCY 9 cut(s) 5, 13, 64, 75, 115, 224, 272, 389, 430
CviKI_1 RGCY 9 cut(s) 5, 13, 64, 75, 115, 224, 272, 389, 430
CviQI GTAC 2 cut(s) 199, 451
DdeI CTNAG 4 cut(s) 9, 36, 93, 349
DpnI GATC 6 cut(s) 57, 187, 316, 368, 416, 425
DpnII GATC 6 cut(s) 55, 185, 314, 366, 414, 423
DraI TTTAAA 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
EciI GGCGGA 1 cut(s) 190
Eco130I CCWWGG 3 cut(s) 76, 267, 292
Eco47I GGWCC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 349
Eco88I CYCGRG 1 cut(s) 126
EcoNI CCTNNNNNAGG 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 256
EcoT14I CCWWGG 3 cut(s) 76, 267, 292
EcoT22I ATGCAT 1 cut(s) 172
ErhI CCWWGG 3 cut(s) 76, 267, 292
FaeI CATG 2 cut(s) 174, 209
FaiI YATR 5 cut(s) 172, 207, 231, 277, 335
FaqI GGGAC 2 cut(s) 242, 368
FatI CATG 2 cut(s) 170, 205
FbaI TGATCA 1 cut(s) 423
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 3 cut(s) 6, 431, 434
FokI GGATG 3 cut(s) 4, 169, 389
Fsp4HI GCNGC 3 cut(s) 6, 431, 434
FspBI CTAG 2 cut(s) 14, 152
GluI GCNGC 3 cut(s) 6, 431, 434
HaeIII GGCC 3 cut(s) 64, 75, 272
HapII CCGG 4 cut(s) 212, 245, 390, 406
Hin1II CATG 2 cut(s) 174, 209
HpaII CCGG 4 cut(s) 212, 245, 390, 406
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 4 cut(s) 94, 264, 314, 319
Hpy188III TCNNGA 2 cut(s) 128, 362
Hpy8I GTNNAC 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 448
HpyCH4III ACNGT 1 cut(s) 447
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 215
HpyF3I CTNAG 4 cut(s) 9, 36, 93, 349
Hsp92II CATG 2 cut(s) 174, 209
Ksp22I TGATCA 1 cut(s) 423
Kzo9I GATC 6 cut(s) 55, 185, 314, 366, 414, 423
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 1 cut(s) 420
LweI GCATC 2 cut(s) 26, 411
MaeI CTAG 2 cut(s) 14, 152
MaeIII GTNAC 2 cut(s) 238, 341
MalI GATC 6 cut(s) 57, 187, 316, 368, 416, 425
MboI GATC 6 cut(s) 55, 185, 314, 366, 414, 423
MboII GAAGA 1 cut(s) 182
MflI RGATCY 3 cut(s) 55, 185, 414
MnlI CCTC 8 cut(s) 31, 31, 88, 270, 283, 312, 454, 460
Mph1103I ATGCAT 1 cut(s) 172
MseI TTAA 2 cut(s) 101, 135
MspA1I CMGCKG 1 cut(s) 433
MspI CCGG 4 cut(s) 212, 245, 390, 406
MspR9I CCNGG 1 cut(s) 407
MwoI GCNNNNNNNGC 2 cut(s) 14, 215
NciI CCSGG 1 cut(s) 407
NdeII GATC 6 cut(s) 55, 185, 314, 366, 414, 423
NheI GCTAGC 1 cut(s) 13
NlaIII CATG 2 cut(s) 174, 209
NlaIV GGNNCC 1 cut(s) 258
NsiI ATGCAT 1 cut(s) 172
PaeR7I CTCGAG 1 cut(s) 126
PflFI GACNNNGTC 1 cut(s) 467
PinAI ACCGGT 1 cut(s) 244
PkrI GCNGC 3 cut(s) 7, 432, 435
PpuMI RGGWCCY 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 256
PspPPI RGGWCCY 1 cut(s) 256
PsuI RGATCY 3 cut(s) 55, 185, 414
PsyI GACNNNGTC 1 cut(s) 467
RsaI GTAC 2 cut(s) 200, 452
RsaNI GTAC 2 cut(s) 199, 451
SaqAI TTAA 2 cut(s) 101, 135
SatI GCNGC 3 cut(s) 6, 431, 434
Sau3AI GATC 6 cut(s) 55, 185, 314, 366, 414, 423
Sau96I GGNCC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 407
SfaNI GCATC 2 cut(s) 26, 411
Sfr274I CTCGAG 1 cut(s) 126
SgrAI CRCCGGYG 1 cut(s) 244
SinI GGWCC 1 cut(s) 256
SlaI CTCGAG 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
SsiI CCGC 3 cut(s) 163, 175, 431
SspMI CTAG 2 cut(s) 14, 152
StyD4I CCNGG 1 cut(s) 405
StyI CCWWGG 3 cut(s) 76, 267, 292
TaaI ACNGT 1 cut(s) 447
TaqI TCGA 3 cut(s) 127, 369, 471
TauI GCSGC 1 cut(s) 433
Tru1I TTAA 2 cut(s) 101, 135
Tru9I TTAA 2 cut(s) 101, 135
TscAI CASTG 2 cut(s) 127, 225
TseI GCWGC 2 cut(s) 5, 433
TspRI CASTG 2 cut(s) 127, 225
Tth111I GACNNNGTC 1 cut(s) 467
VpaK11BI GGWCC 1 cut(s) 256
XagI CCTNNNNNAGG 1 cut(s) 69
XhoI CTCGAG 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 82
XspI CTAG 2 cut(s) 14, 152
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.