Rmu_sc0001123.1_g000022

wall-associated receptor kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001123.1
N/A
Physical Location & Seq
Forward (+)
86883 .. 87242
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001123.1_g000022.1.cds

Sequence Viewer

Length: 360 bp
atgacaaacgtacaaggaacatttggttatttggatccagagtacttccaatctagccagtttacagataagagtgacgtttatagtttcggagtggttcttgctgagctcttgaccgggcgaaaaccaatttttcagaggacgccacaagaacccacgagtcttgcaacttatttccttgagtcaaaggagcacagtcatctttctgatatttttgatgctcaagttgtgaaagatggtaggaaagaagagattgtggcagttgccaattgcaaaacgttgcttaaatttgaatggaaggagacgcccttctatgaaagaagtagccgtggagctggagggaattcaattgtcagttaa

Protein Analysis

119

Amino Acids

13.44

Weight (kDa)

5.35

Isoelectric Point (pI)

29.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 278
AclWI GGATC 2 cut(s) 29, 42
AcsI RAATTY 2 cut(s) 287, 343
AcyI GRCGYC 2 cut(s) 143, 305
AfaI GTAC 2 cut(s) 12, 44
AgsI TTSAA 2 cut(s) 293, 348
AluBI AGCT 2 cut(s) 109, 335
AluI AGCT 2 cut(s) 109, 335
Alw21I GWGCWC 2 cut(s) 111, 195
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 2 cut(s) 29, 42
ApoI RAATTY 2 cut(s) 287, 343
AsuC2I CCSGG 1 cut(s) 118
BamHI GGATCC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 111
BauI CACGAG 1 cut(s) 157
Bbv12I GWGCWC 2 cut(s) 111, 195
BccI CCATC 1 cut(s) 230
BceAI ACGGC 1 cut(s) 312
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 1 cut(s) 54
BlpI GCTNAGC 1 cut(s) 105
BmcAI AGTACT 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 105
BpuEI CTTGAG 2 cut(s) 200, 207
BpuMI CCSGG 1 cut(s) 118
BsaHI GRCGYC 2 cut(s) 143, 305
BsaJI CCNNGG 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 58
BsiHKAI GWGCWC 2 cut(s) 111, 195
BsiSI CCGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 296
BsmBI CGTCTC 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 111, 195
Bsp143I GATC 1 cut(s) 34
Bsp1720I GCTNAGC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 2 cut(s) 29, 42
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 1 cut(s) 34
BssNI GRCGYC 2 cut(s) 143, 305
BssSI CACGAG 1 cut(s) 157
Bst2BI CACGAG 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 2 cut(s) 143, 305
BstDEI CTNAG 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 328
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BtgI CCRYGG 1 cut(s) 328
CseI GACGC 2 cut(s) 151, 313
Csp6I GTAC 2 cut(s) 11, 43
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviJI RGCY 4 cut(s) 57, 109, 327, 335
CviKI_1 RGCY 4 cut(s) 57, 109, 327, 335
CviQI GTAC 2 cut(s) 11, 43
DdeI CTNAG 1 cut(s) 105
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 296
FaiI YATR 2 cut(s) 84, 315
FriOI GRGCYC 1 cut(s) 111
FspBI CTAG 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 357
HapII CCGG 1 cut(s) 117
HgaI GACGC 2 cut(s) 151, 313
Hin1I GRCGYC 2 cut(s) 143, 305
HinfI GANTC 2 cut(s) 160, 182
HpaII CCGG 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 3 cut(s) 92, 138, 208
Hpy188III TCNNGA 2 cut(s) 38, 112
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 2 cut(s) 292, 319
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 3 cut(s) 9, 78, 278
HpyCH4V TGCA 2 cut(s) 167, 273
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 3 cut(s) 9, 78, 278
Hsp92I GRCGYC 2 cut(s) 143, 305
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 2 cut(s) 190, 332
LpnPI CCDG 4 cut(s) 51, 71, 130, 321
LweI GCATC 1 cut(s) 208
MaeI CTAG 1 cut(s) 54
MaeII ACGT 3 cut(s) 9, 78, 278
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 1 cut(s) 260
MfeI CAATTG 2 cut(s) 268, 348
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 2 cut(s) 111, 195
MluCI AATT 5 cut(s) 129, 268, 287, 343, 348
MlyI GAGTC 2 cut(s) 169, 191
MnlI CCTC 2 cut(s) 132, 332
MseI TTAA 2 cut(s) 285, 358
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 2 cut(s) 268, 348
NciI CCSGG 1 cut(s) 118
NdeII GATC 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 74
PleI GAGTC 2 cut(s) 168, 190
PpsI GAGTC 2 cut(s) 168, 190
Psp124BI GAGCTC 1 cut(s) 111
Psp1406I AACGTT 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 2 cut(s) 12, 44
RsaNI GTAC 2 cut(s) 11, 43
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 285, 358
Sau3AI GATC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 44
SchI GAGTC 2 cut(s) 169, 191
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 2 cut(s) 111, 195
SetI ASST 5 cut(s) 12, 81, 111, 281, 337
SfaNI GCATC 1 cut(s) 208
SmlI CTYRAG 2 cut(s) 179, 222
SmoI CTYRAG 2 cut(s) 179, 222
Sse9I AATT 5 cut(s) 129, 268, 287, 343, 348
SspMI CTAG 1 cut(s) 54
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 3 cut(s) 12, 81, 281
TasI AATT 5 cut(s) 129, 268, 287, 343, 348
TatI WGTACW 1 cut(s) 42
Tru1I TTAA 2 cut(s) 285, 358
Tru9I TTAA 2 cut(s) 285, 358
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 330
XapI RAATTY 2 cut(s) 287, 343
XspI CTAG 1 cut(s) 54
ZrmI AGTACT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.