Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001124.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

38007 .. 38741

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggagtctgaggagaacgggcctctactacttggatatgaattgcattcctggatttctgacttgtcatccacggcaattgaagagcttttagagcaacagccaccaacaccggtgcttagacggttagctgggttgttggcttgggagtcaaaactcatattgcatgtatctggttcatctattattgctggtattttcaataacttgcttggcttcgtcacacttacaatttgtagccagttaagtattgtagagcttgttggtgcctccatgccccaatcttataattcaaggtggattctaattctcatggatttcgaatctgggcatggcaagtgcggtgccaactatgtgtgggcaaacctatggggccaagaaatattcagcattaatgggaatcatgtgccaaagagcaatcatcctacacttgggaacagcagttctgctaacatttctgtgttggtggtcaagccccatgctcatcgcaatgggcatatcggagaccatagccgaccaaggacaactttgtgcgtcgcatcatccctcaactctatgcattggcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

189

Amino Acids

20.72

Weight (kDa)

6.17

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AccB1I	GGYRCC	2 cut(s)	266, 344
AciI	CCGC	1 cut(s)	342
AfiI	CCNNNNNNNGG	1 cut(s)	431
AgeI	ACCGGT	1 cut(s)	112
AgsI	TTSAA	3 cut(s)	83, 202, 294
AjnI	CCWGG	1 cut(s)	50
AloI	GAACNNNNNNTCC	2 cut(s)	427, 459
AluBI	AGCT	3 cut(s)	88, 131, 259
AluI	AGCT	3 cut(s)	88, 131, 259
Alw26I	GTCTC	1 cut(s)	498
AoxI	GGCC	2 cut(s)	20, 373
AseI	ATTAAT	1 cut(s)	393
AsiGI	ACCGGT	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	20, 373
AsuII	TTCGAA	1 cut(s)	321
BanI	GGYRCC	2 cut(s)	266, 344
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	498
Bme1390I	CCNGG	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	20, 373
BmiI	GGNNCC	3 cut(s)	268, 346, 374
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	548
Bpu14I	TTCGAA	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	498
BsaJI	CCNNGG	2 cut(s)	72, 518
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	496
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	2 cut(s)	72, 518
BseGI	GGATG	3 cut(s)	68, 421, 542
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	496
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	2 cut(s)	22, 375
BshNI	GGYRCC	2 cut(s)	266, 344
BshTI	ACCGGT	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	1 cut(s)	498
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	22, 375
Bso31I	GGTCTC	1 cut(s)	498
Bsp119I	TTCGAA	1 cut(s)	321
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	2 cut(s)	22, 375
BspLI	GGNNCC	3 cut(s)	268, 346, 374
BspQI	GCTCTTC	1 cut(s)	78
BspT104I	TTCGAA	1 cut(s)	321
BspT107I	GGYRCC	2 cut(s)	266, 344
BspTNI	GGTCTC	1 cut(s)	498
BsrDI	GCAATG	1 cut(s)	496
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	72, 518
BssT1I	CCWWGG	1 cut(s)	518
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	78
BstBI	TTCGAA	1 cut(s)	321
BstDEI	CTNAG	2 cut(s)	9, 119
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	68, 421, 542
BstMAI	GTCTC	1 cut(s)	498
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNI	CCWGG	1 cut(s)	52
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	50
BsuRI	GGCC	2 cut(s)	22, 375
BtgI	CCRYGG	1 cut(s)	72
BtgZI	GCGATG	1 cut(s)	470
BtsCI	GGATG	3 cut(s)	68, 421, 542
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	20, 373
CseI	GACGC	1 cut(s)	523
CspAI	ACCGGT	1 cut(s)	112
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	6 cut(s)	167, 274, 313, 332, 404, 479
DdeI	CTNAG	2 cut(s)	9, 119
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	518
Eco31I	GGTCTC	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	518
EcoT22I	ATGCAT	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	518
FaeI	CATG	6 cut(s)	170, 277, 316, 335, 407, 482
FalI	AAGNNNNNCTT	2 cut(s)	511, 543
FatI	CATG	6 cut(s)	166, 273, 312, 331, 403, 478
FokI	GGATG	3 cut(s)	55, 408, 529
GsaI	CCCAGC	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	22, 375
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	523
Hin1II	CATG	6 cut(s)	170, 277, 316, 335, 407, 482
HinfI	GANTC	5 cut(s)	5, 149, 301, 323, 400
HpaII	CCGG	1 cut(s)	113
Hpy188I	TCNGA	3 cut(s)	10, 61, 503
Hpy99I	CGWCG	1 cut(s)	539
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	3 cut(s)	46, 166, 559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpyF3I	CTNAG	2 cut(s)	9, 119
Hsp92II	CATG	6 cut(s)	170, 277, 316, 335, 407, 482
LguI	GCTCTTC	1 cut(s)	78
LpnPI	CCDG	8 cut(s)	37, 64, 117, 126, 159, 177, 254, 312
LweI	GCATC	1 cut(s)	548
MaeIII	GTNAC	1 cut(s)	220
MboII	GAAGA	1 cut(s)	95
MfeI	CAATTG	1 cut(s)	78
MluCI	AATT	5 cut(s)	41, 78, 231, 289, 306
MlyI	GAGTC	2 cut(s)	14, 158
MnlI	CCTC	4 cut(s)	4, 33, 280, 557
Mph1103I	ATGCAT	1 cut(s)	561
MseI	TTAA	2 cut(s)	245, 393
MslI	CAYNNNNRTG	2 cut(s)	458, 489
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	94
NlaIII	CATG	6 cut(s)	170, 277, 316, 335, 407, 482
NlaIV	GGNNCC	3 cut(s)	268, 346, 374
NmuCI	GTSAC	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	561
NspI	RCATGY	1 cut(s)	170
NspV	TTCGAA	1 cut(s)	321
PciSI	GCTCTTC	1 cut(s)	78
PctI	GAATGC	1 cut(s)	46
PfeI	GAWTC	3 cut(s)	301, 323, 400
PfoI	TCCNGGA	1 cut(s)	50
PinAI	ACCGGT	1 cut(s)	112
PleI	GAGTC	2 cut(s)	13, 157
PpsI	GAGTC	2 cut(s)	13, 157
PshBI	ATTAAT	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	3 cut(s)	268, 346, 374
PspPI	GGNCC	2 cut(s)	20, 373
RseI	CAYNNNNRTG	2 cut(s)	458, 489
SapI	GCTCTTC	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	245, 393
Sau96I	GGNCC	2 cut(s)	20, 373
SchI	GAGTC	2 cut(s)	14, 158
ScrFI	CCNGG	1 cut(s)	52
SetI	ASST	5 cut(s)	90, 133, 261, 299, 369
SfaNI	GCATC	1 cut(s)	548
SfuI	TTCGAA	1 cut(s)	321
SgrAI	CRCCGGYG	1 cut(s)	112
SmiMI	CAYNNNNRTG	2 cut(s)	458, 489
Sse9I	AATT	5 cut(s)	41, 78, 231, 289, 306
SsiI	CCGC	1 cut(s)	342
SspI	AATATT	1 cut(s)	384
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	518
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	321
TasI	AATT	5 cut(s)	41, 78, 231, 289, 306
TfiI	GAWTC	3 cut(s)	301, 323, 400
Tru1I	TTAA	2 cut(s)	245, 393
Tru9I	TTAA	2 cut(s)	245, 393
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	54, 168
VspI	ATTAAT	1 cut(s)	393
XceI	RCATGY	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.