Rmu_sc0001126.1_g000015

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001126.1
N/A
Physical Location & Seq
Reverse (-)
57352 .. 58529
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 465 bp
atgacccacattggaagcaagggaaccgcatccccccaaatcctttacaaatggcccaacatcctaaagaggggagatgtaactgaagaagagatcattgcagccacaaaagcattaaatgctcacaacttcatatcttcattgcctcaaggctatgacacctcagtcggggaacgaggggttcaattatctggagggcagaaacaaagaatagccattgcaagggctattctaaaggaccttaaaatccttttcctcgataaagctacaagatactttggaacagtgatggtgaatagaacaactattgtagttgcacaccgccttaccatgatcaaaggggcagacataattgctgtggtcaagaacagcgtgattgctgagaagagtagccatgattttctaatgaagatctctaatggtaattatgtatctttggtggcactccattcaagctcaacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

154

Amino Acids

16.78

Weight (kDa)

9.89

Isoelectric Point (pI)

29.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 30 - 90 2.4e-09 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AciI CCGC 2 cut(s) 27, 322
AcuI CTGAAG 1 cut(s) 105
AfiI CCNNNNNNNGG 3 cut(s) 70, 168, 222
AgsI TTSAA 2 cut(s) 185, 453
AluBI AGCT 2 cut(s) 266, 456
AluI AGCT 2 cut(s) 266, 456
AoxI GGCC 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 54, 238
AsuHPI GGTGA 1 cut(s) 304
AvaII GGWCC 1 cut(s) 238
BbvI GCAGC 1 cut(s) 113
BccI CCATC 1 cut(s) 283
BclI TGATCA 1 cut(s) 333
BglII AGATCT 1 cut(s) 411
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 238
BmgT120I GGNCC 2 cut(s) 54, 238
BmiI GGNNCC 1 cut(s) 25
BmsI GCATC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 168, 222
Bse3DI GCAATG 3 cut(s) 96, 140, 216
BseGI GGATG 2 cut(s) 29, 60
BseLI CCNNNNNNNGG 3 cut(s) 70, 168, 222
BseMI GCAATG 3 cut(s) 96, 140, 216
BseMII CTCAG 2 cut(s) 177, 372
BseXI GCAGC 1 cut(s) 113
BshFI GGCC 1 cut(s) 55
BslI CCNNNNNNNGG 3 cut(s) 70, 168, 222
BsnI GGCC 1 cut(s) 55
Bsp143I GATC 3 cut(s) 93, 333, 411
BspACI CCGC 2 cut(s) 27, 322
BspANI GGCC 1 cut(s) 55
BspCNI CTCAG 2 cut(s) 176, 373
BspLI GGNNCC 1 cut(s) 25
BsrDI GCAATG 3 cut(s) 96, 140, 216
BssMI GATC 3 cut(s) 93, 333, 411
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 2 cut(s) 84, 380
BstAPI GCANNNNNTGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 163, 381
BstF5I GGATG 2 cut(s) 29, 60
BstKTI GATC 3 cut(s) 96, 336, 414
BstMBI GATC 3 cut(s) 93, 333, 411
BstMWI GCNNNNNNNGC 2 cut(s) 110, 119
BstV1I GCAGC 1 cut(s) 113
BstX2I RGATCY 1 cut(s) 411
BstYI RGATCY 1 cut(s) 411
BsuRI GGCC 1 cut(s) 55
BtsCI GGATG 2 cut(s) 29, 60
BtsIMutI CAGTG 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 54, 238
CviAII CATG 3 cut(s) 331, 395, 462
CviJI RGCY 8 cut(s) 55, 104, 153, 215, 227, 266, 393, 456
CviKI_1 RGCY 8 cut(s) 55, 104, 153, 215, 227, 266, 393, 456
DdeI CTNAG 2 cut(s) 163, 381
DpnI GATC 3 cut(s) 95, 335, 413
DpnII GATC 3 cut(s) 93, 333, 411
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
Eam1104I CTCTTC 2 cut(s) 84, 380
EarI CTCTTC 2 cut(s) 84, 380
Eco47I GGWCC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 238
FaeI CATG 3 cut(s) 334, 398, 465
FaiI YATR 7 cut(s) 134, 156, 332, 350, 396, 429, 463
FatI CATG 3 cut(s) 330, 394, 461
FbaI TGATCA 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 2 cut(s) 16, 47
Fsp4HI GCNGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 1 cut(s) 55
Hin1II CATG 3 cut(s) 334, 398, 465
HphI GGTGA 1 cut(s) 304
Hpy188III TCNNGA 2 cut(s) 192, 364
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4V TGCA 3 cut(s) 101, 221, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 119
HpyF3I CTNAG 2 cut(s) 163, 381
Hsp92II CATG 3 cut(s) 334, 398, 465
Ksp22I TGATCA 1 cut(s) 333
Kzo9I GATC 3 cut(s) 93, 333, 411
LpnPI CCDG 1 cut(s) 177
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 79
MalI GATC 3 cut(s) 95, 335, 413
MboI GATC 3 cut(s) 93, 333, 411
MboII GAAGA 5 cut(s) 98, 101, 129, 397, 421
MflI RGATCY 1 cut(s) 411
MluCI AATT 3 cut(s) 185, 351, 424
MnlI CCTC 6 cut(s) 63, 156, 170, 172, 188, 266
MseI TTAA 2 cut(s) 116, 243
MwoI GCNNNNNNNGC 2 cut(s) 110, 119
NdeII GATC 3 cut(s) 93, 333, 411
NlaIII CATG 3 cut(s) 334, 398, 465
NlaIV GGNNCC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 103
PpuMI RGGWCCY 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 2 cut(s) 54, 238
PspPPI RGGWCCY 1 cut(s) 238
PsuI RGATCY 1 cut(s) 411
SaqAI TTAA 2 cut(s) 116, 243
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 3 cut(s) 93, 333, 411
Sau96I GGNCC 2 cut(s) 54, 238
SetI ASST 4 cut(s) 164, 243, 268, 458
SfaNI GCATC 1 cut(s) 38
SinI GGWCC 1 cut(s) 238
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
Sse9I AATT 3 cut(s) 185, 351, 424
SsiI CCGC 2 cut(s) 27, 322
TaaI ACNGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 258
TasI AATT 3 cut(s) 185, 351, 424
Tru1I TTAA 2 cut(s) 116, 243
Tru9I TTAA 2 cut(s) 116, 243
TscAI CASTG 1 cut(s) 291
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 3 cut(s) 121, 129, 422
TspRI CASTG 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.