Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001136.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

152460 .. 152804

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgggaggttccggccgaagagttcgacagcatcgtcgacaccaatgtcaagggggtcgcgaacgtgttgcaccatttcaatcctcttatgctcaagagggatcccggtccggcaccagaatcatagtcaacatgtcttccggctggggcagatctggtgccgcacatgtggccccttactgtgcctccaaatgggtcgtggagggtttgaccatgtcggtggccaaggagttgccaaaggacatggccattgtggctctcaacccgagggttatacacactgatatgcttgtttcctgctttgggccgtataatatggatagttacccgaagcctcaggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0034641 GO:0036094 GO:0042558 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048037 GO:0050661 GO:0050662 GO:0051186 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

114

Amino Acids

12.53

Weight (kDa)

10.03

Isoelectric Point (pI)

61.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	42 - 98	2e-11	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	33, 45
AccB1I	GGYRCC	2 cut(s)	113, 158
AccI	GTMKAC	1 cut(s)	37
AccII	CGCG	1 cut(s)	60
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	2 cut(s)	96, 109
AcoI	YGGCCR	3 cut(s)	13, 222, 246
AfiI	CCNNNNNNNGG	2 cut(s)	192, 303
AflIII	ACRYGT	3 cut(s)	64, 132, 166
AgsI	TTSAA	1 cut(s)	80
AlwI	GGATC	2 cut(s)	96, 109
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	5 cut(s)	13, 171, 222, 246, 305
AspS9I	GGNCC	3 cut(s)	108, 172, 305
AsuC2I	CCSGG	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	108
AxyI	CCTNAGG	1 cut(s)	336
BalI	TGGCCA	2 cut(s)	224, 248
BamHI	GGATCC	1 cut(s)	101
BanI	GGYRCC	2 cut(s)	113, 158
BbsI	GAAGAC	1 cut(s)	129
BceAI	ACGGC	1 cut(s)	292
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BcnI	CCSGG	1 cut(s)	106
BglI	GCCNNNNNGGC	1 cut(s)	254
BglII	AGATCT	1 cut(s)	152
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	108
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	3 cut(s)	108, 172, 305
BmiI	GGNNCC	5 cut(s)	10, 103, 115, 160, 174
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	225, 266
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 303
Bse21I	CCTNAGG	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	225, 266
BseLI	CCNNNNNNNGG	2 cut(s)	192, 303
BseX3I	CGGCCG	1 cut(s)	13
BseYI	CCCAGC	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	60
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	5 cut(s)	15, 173, 224, 248, 307
BshNI	GGYRCC	2 cut(s)	113, 158
BsiEI	CGRYCG	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	4 cut(s)	12, 106, 111, 141
BslI	CCNNNNNNNGG	2 cut(s)	192, 303
BsnI	GGCC	5 cut(s)	15, 173, 224, 248, 307
BsoBI	CYCGRG	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	101, 152
Bsp68I	TCGCGA	1 cut(s)	60
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	5 cut(s)	15, 173, 224, 248, 307
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	5 cut(s)	10, 103, 115, 160, 174
BspPI	GGATC	2 cut(s)	96, 109
BspT107I	GGYRCC	2 cut(s)	113, 158
BssECI	CCNNGG	2 cut(s)	225, 266
BssMI	GATC	2 cut(s)	101, 152
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	336
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	2 cut(s)	104, 155
BstMBI	GATC	2 cut(s)	101, 152
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 254
BstNSI	RCATGY	2 cut(s)	136, 170
BstSCI	CCNGG	1 cut(s)	104
BstUI	CGCG	1 cut(s)	60
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	101, 152
BstXI	CCANNNNNNTGG	1 cut(s)	220
BstYI	RGATCY	2 cut(s)	101, 152
BstZI	CGGCCG	1 cut(s)	13
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	5 cut(s)	15, 173, 224, 248, 307
BtsIMutI	CAGTG	1 cut(s)	279
BtuMI	TCGCGA	1 cut(s)	60
Cfr13I	GGNCC	3 cut(s)	108, 172, 305
CpoI	CGGWCCG	1 cut(s)	108
CspI	CGGWCCG	1 cut(s)	108
CviAII	CATG	4 cut(s)	133, 167, 214, 244
CviJI	RGCY	8 cut(s)	15, 144, 173, 224, 248, 257, 307, 334
CviKI_1	RGCY	8 cut(s)	15, 144, 173, 224, 248, 257, 307, 334
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	2 cut(s)	103, 154
DpnII	GATC	2 cut(s)	101, 152
DrdI	GACNNNNNNGTC	2 cut(s)	33, 45
DseDI	GACNNNNNNGTC	2 cut(s)	33, 45
EaeI	YGGCCR	3 cut(s)	13, 222, 246
EagI	CGGCCG	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
EclXI	CGGCCG	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	108
Eco52I	CGGCCG	1 cut(s)	13
Eco81I	CCTNAGG	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	4 cut(s)	136, 170, 217, 247
FatI	CATG	4 cut(s)	132, 166, 213, 243
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	162
GsaI	CCCAGC	1 cut(s)	148
HaeIII	GGCC	5 cut(s)	15, 173, 224, 248, 307
HapII	CCGG	4 cut(s)	12, 106, 111, 141
Hin1II	CATG	4 cut(s)	136, 170, 217, 247
HincII	GTYRAC	2 cut(s)	38, 130
HindII	GTYRAC	2 cut(s)	38, 130
HinfI	GANTC	1 cut(s)	120
HpaII	CCGG	4 cut(s)	12, 106, 111, 141
Hpy166II	GTNNAC	2 cut(s)	38, 130
Hpy188III	TCNNGA	2 cut(s)	59, 95
Hpy8I	GTNNAC	2 cut(s)	38, 130
Hpy99I	CGWCG	1 cut(s)	39
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 254
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	4 cut(s)	136, 170, 217, 247
Kzo9I	GATC	2 cut(s)	101, 152
LpnPI	CCDG	9 cut(s)	25, 119, 124, 130, 130, 141, 154, 310, 323
LweI	GCATC	1 cut(s)	40
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	2 cut(s)	103, 154
MboI	GATC	2 cut(s)	101, 152
MboII	GAAGA	2 cut(s)	30, 129
MflI	RGATCY	2 cut(s)	101, 152
MlsI	TGGCCA	2 cut(s)	224, 248
MluNI	TGGCCA	2 cut(s)	224, 248
MnlI	CCTC	6 cut(s)	91, 94, 196, 196, 261, 345
Mox20I	TGGCCA	2 cut(s)	224, 248
MscI	TGGCCA	2 cut(s)	224, 248
MslI	CAYNNNNRTG	2 cut(s)	218, 284
Msp20I	TGGCCA	2 cut(s)	224, 248
MspI	CCGG	4 cut(s)	12, 106, 111, 141
MspR9I	CCNGG	1 cut(s)	106
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	170, 254
NciI	CCSGG	1 cut(s)	106
NdeII	GATC	2 cut(s)	101, 152
NlaIII	CATG	4 cut(s)	136, 170, 217, 247
NlaIV	GGNNCC	5 cut(s)	10, 103, 115, 160, 174
NruI	TCGCGA	1 cut(s)	60
NspI	RCATGY	2 cut(s)	136, 170
PciI	ACATGT	2 cut(s)	132, 166
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	120
PflFI	GACNNNGTC	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	163
PscI	ACATGT	2 cut(s)	132, 166
PspFI	CCCAGC	1 cut(s)	144
PspN4I	GGNNCC	5 cut(s)	10, 103, 115, 160, 174
PspPI	GGNCC	3 cut(s)	108, 172, 305
PsuI	RGATCY	2 cut(s)	101, 152
PsyI	GACNNNGTC	1 cut(s)	214
RruI	TCGCGA	1 cut(s)	60
RseI	CAYNNNNRTG	2 cut(s)	218, 284
Rsr2I	CGGWCCG	1 cut(s)	108
RsrII	CGGWCCG	1 cut(s)	108
SalI	GTCGAC	1 cut(s)	36
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	101, 152
Sau96I	GGNCC	3 cut(s)	108, 172, 305
ScrFI	CCNGG	1 cut(s)	106
SetI	ASST	3 cut(s)	10, 67, 342
SfaNI	GCATC	1 cut(s)	40
SinI	GGWCC	1 cut(s)	108
SmiMI	CAYNNNNRTG	2 cut(s)	218, 284
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
SsiI	CCGC	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	2 cut(s)	25, 37
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	120
TscAI	CASTG	1 cut(s)	286
TspRI	CASTG	1 cut(s)	286
Tth111I	GACNNNGTC	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	108
XceI	RCATGY	2 cut(s)	136, 170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.