Rmu_sc0001136.1_g000082

Integrase core domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001136.1
N/A
Physical Location & Seq
Forward (+)
389524 .. 394523
5000 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 879 bp
ctgggtctcttttacttttactcacctcagatcggagatcgttttcagcgacaatcagactttgtacgaggggaagaagtaggagttctcggcgacgagcttctcaaggtcggagatggagacggagatttggtcgaggaagggtttgaggtgagtgggatcggtgagtcggcactgggcgagttgggagttgacggaggtggactcaaaggaaggggaggggtcggcagagttggcggcggcgaggcgcgtgagggaggtttttgggtagtccattttagaggtgactctgccgaatttttggtagagttatccctaaggtgggccccacaaggccacctcgggtttcagggtgaaattcggggtggccaggtacttagcattcatggacaaccaatcgcccaacattgggaagattgcaacattattggtcgctatgttcaacaaggctttcaaaagcctaaggtttctcagaattttgtttcttctaattttgattcgattactaaccctaattatgacaagatgtttgatgctttagcaaggtctactcaggcacttgtggagagtcaacaaagtcatgataacgatatcatggaattgaaggaacaaatgggtcgagttttgggctttataggtatgctttcggactcaaggacccaatctgctaggctgtcacaacaagaagtggacgtacacttgtggatccaccaaaaaaagttattgctaatccatctcccccctgttccatttccacacagatttgcaaagaataagaaggatgaggaggaaaaagcaattttggagattttcaagaagatacaagtcaacatacctttgattgagtgccttactcaaatccctaagtacgccaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag rve

Protein Analysis

292

Amino Acids

32.49

Weight (kDa)

5.52

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 548
AccII CGCG 1 cut(s) 250
AciI CCGC 2 cut(s) 237, 240
AclWI GGATC 3 cut(s) 167, 700, 713
AcoI YGGCCR 1 cut(s) 367
AcsI RAATTY 3 cut(s) 296, 357, 475
AfaI GTAC 4 cut(s) 66, 375, 696, 869
AfiI CCNNNNNNNGG 5 cut(s) 32, 321, 322, 408, 409
AgsI TTSAA 4 cut(s) 443, 455, 604, 814
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 2 cut(s) 11, 114
AlwI GGATC 3 cut(s) 167, 700, 713
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 3 cut(s) 324, 334, 367
ApaI GGGCCC 1 cut(s) 328
ApoI RAATTY 3 cut(s) 296, 357, 475
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 3 cut(s) 324, 325, 657
AsuHPI GGTGA 5 cut(s) 15, 163, 176, 296, 365
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 657
AxyI CCTNAGG 2 cut(s) 317, 462
BaeGI GKGCMC 1 cut(s) 328
BalI TGGCCA 1 cut(s) 369
BamHI GGATCC 1 cut(s) 705
BanII GRGCYC 1 cut(s) 328
BarI GAAGNNNNNNTAC 2 cut(s) 678, 710
BccI CCATC 2 cut(s) 110, 741
BciT130I CCWGG 1 cut(s) 371
BcoDI GTCTC 2 cut(s) 11, 114
BfaI CTAG 1 cut(s) 669
BisI GCNGC 2 cut(s) 238, 241
BlsI GCNGC 2 cut(s) 239, 242
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 1 cut(s) 657
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 3 cut(s) 324, 325, 657
BmiI GGNNCC 4 cut(s) 326, 327, 659, 707
BmrFI CCNGG 1 cut(s) 371
BmrI ACTGGG 1 cut(s) 185
BmsI GCATC 1 cut(s) 523
BmuI ACTGGG 1 cut(s) 185
BplI GAGNNNNNCTC 2 cut(s) 189, 221
BpuEI CTTGAG 2 cut(s) 89, 637
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 5 cut(s) 32, 321, 322, 408, 409
Bse1I ACTGG 1 cut(s) 180
Bse21I CCTNAGG 2 cut(s) 317, 462
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 1 cut(s) 787
BseLI CCNNNNNNNGG 5 cut(s) 32, 321, 322, 408, 409
BseMII CTCAG 3 cut(s) 41, 485, 566
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 800
BseSI GKGCMC 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 250
BshFI GGCC 3 cut(s) 326, 336, 369
BsiHKCI CYCGRG 1 cut(s) 341
BslI CCNNNNNNNGG 5 cut(s) 32, 321, 322, 408, 409
BsmAI GTCTC 2 cut(s) 11, 114
BsmBI CGTCTC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 381
BsnI GGCC 3 cut(s) 326, 336, 369
Bso31I GGTCTC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 341
Bsp120I GGGCCC 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 328
Bsp143I GATC 4 cut(s) 30, 37, 159, 705
BspACI CCGC 2 cut(s) 237, 240
BspANI GGCC 3 cut(s) 326, 336, 369
BspCNI CTCAG 3 cut(s) 40, 484, 565
BspFNI CGCG 1 cut(s) 250
BspHI TCATGA 1 cut(s) 580
BspLI GGNNCC 4 cut(s) 326, 327, 659, 707
BspPI GGATC 3 cut(s) 167, 700, 713
BspTNI GGTCTC 1 cut(s) 11
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 4 cut(s) 30, 37, 159, 705
Bst2UI CCWGG 1 cut(s) 371
BstDEI CTNAG 7 cut(s) 27, 317, 377, 462, 471, 552, 864
BstF5I GGATG 1 cut(s) 787
BstFNI CGCG 1 cut(s) 250
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 4 cut(s) 33, 40, 162, 708
BstMAI GTCTC 2 cut(s) 11, 114
BstMBI GATC 4 cut(s) 30, 37, 159, 705
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstNI CCWGG 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 369
BstSLI GKGCMC 1 cut(s) 328
BstUI CGCG 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 705
BstYI RGATCY 1 cut(s) 705
Bsu36I CCTNAGG 2 cut(s) 317, 462
BsuRI GGCC 3 cut(s) 326, 336, 369
BtsCI GGATG 1 cut(s) 787
BtsIMutI CAGTG 1 cut(s) 173
CciI TCATGA 1 cut(s) 580
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 3 cut(s) 324, 325, 657
Csp6I GTAC 4 cut(s) 65, 374, 695, 868
CviAII CATG 3 cut(s) 386, 581, 595
CviJI RGCY 8 cut(s) 100, 326, 336, 369, 450, 460, 630, 673
CviKI_1 RGCY 8 cut(s) 100, 326, 336, 369, 450, 460, 630, 673
CviQI GTAC 4 cut(s) 65, 374, 695, 868
DdeI CTNAG 7 cut(s) 27, 317, 377, 462, 471, 552, 864
DpnI GATC 4 cut(s) 32, 39, 161, 707
DpnII GATC 4 cut(s) 30, 37, 159, 705
EaeI YGGCCR 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 328
Eco31I GGTCTC 1 cut(s) 11
Eco32I GATATC 1 cut(s) 592
Eco47I GGWCC 1 cut(s) 657
Eco81I CCTNAGG 2 cut(s) 317, 462
Eco88I CYCGRG 1 cut(s) 341
EcoO109I RGGNCCY 2 cut(s) 325, 657
EcoRII CCWGG 1 cut(s) 369
EcoRV GATATC 1 cut(s) 592
EcoT38I GRGCYC 1 cut(s) 328
Esp3I CGTCTC 1 cut(s) 114
FaeI CATG 3 cut(s) 389, 584, 598
FaiI YATR 8 cut(s) 387, 438, 519, 582, 596, 635, 641, 833
FatI CATG 3 cut(s) 385, 580, 594
FblI GTMKAC 1 cut(s) 548
Fnu4HI GCNGC 2 cut(s) 238, 241
FokI GGATG 1 cut(s) 794
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 2 cut(s) 238, 241
FspBI CTAG 1 cut(s) 669
GlaI GCGC 1 cut(s) 249
GluI GCNGC 2 cut(s) 238, 241
HaeIII GGCC 3 cut(s) 326, 336, 369
HhaI GCGC 1 cut(s) 250
Hin1II CATG 3 cut(s) 389, 584, 598
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 3 cut(s) 193, 572, 829
HindII GTYRAC 3 cut(s) 193, 572, 829
HinfI GANTC 6 cut(s) 167, 204, 287, 497, 568, 650
HphI GGTGA 5 cut(s) 15, 163, 176, 296, 365
Hpy166II GTNNAC 7 cut(s) 193, 203, 549, 572, 691, 697, 829
Hpy188I TCNGA 6 cut(s) 30, 35, 58, 113, 474, 649
Hpy188III TCNNGA 2 cut(s) 581, 814
Hpy8I GTNNAC 7 cut(s) 193, 203, 549, 572, 691, 697, 829
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 4 cut(s) 134, 207, 598, 772
HpyCH4IV ACGT 1 cut(s) 693
HpyCH4V TGCA 2 cut(s) 420, 767
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 7 cut(s) 27, 317, 377, 462, 471, 552, 864
HpySE526I ACGT 1 cut(s) 693
Hsp92II CATG 3 cut(s) 389, 584, 598
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 4 cut(s) 30, 37, 159, 705
LpnPI CCDG 6 cut(s) 161, 335, 356, 383, 539, 756
LweI GCATC 1 cut(s) 523
MaeI CTAG 1 cut(s) 669
MaeII ACGT 1 cut(s) 693
MaeIII GTNAC 2 cut(s) 284, 675
MalI GATC 4 cut(s) 32, 39, 161, 707
MboI GATC 4 cut(s) 30, 37, 159, 705
MboII GAAGA 4 cut(s) 86, 425, 477, 829
MflI RGATCY 1 cut(s) 705
MhlI GDGCHC 1 cut(s) 328
MlsI TGGCCA 1 cut(s) 369
MluCI AATT 7 cut(s) 296, 357, 475, 490, 514, 599, 798
MluNI TGGCCA 1 cut(s) 369
MlyI GAGTC 5 cut(s) 176, 198, 281, 577, 644
MmeI TCCRAC 1 cut(s) 91
Mox20I TGGCCA 1 cut(s) 369
MscI TGGCCA 1 cut(s) 369
Msp20I TGGCCA 1 cut(s) 369
MspR9I CCNGG 1 cut(s) 371
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 1 cut(s) 371
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 234
NdeII GATC 4 cut(s) 30, 37, 159, 705
NlaIII CATG 3 cut(s) 389, 584, 598
NlaIV GGNNCC 4 cut(s) 326, 327, 659, 707
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 2 cut(s) 284, 675
PagI TCATGA 1 cut(s) 580
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PctI GAATGC 1 cut(s) 381
PfeI GAWTC 1 cut(s) 497
PkrI GCNGC 2 cut(s) 239, 242
PleI GAGTC 5 cut(s) 175, 198, 281, 576, 644
PpsI GAGTC 5 cut(s) 175, 198, 281, 576, 644
PpuMI RGGWCCY 1 cut(s) 657
Psp5II RGGWCCY 1 cut(s) 657
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 4 cut(s) 326, 327, 659, 707
PspOMI GGGCCC 1 cut(s) 324
PspPI GGNCC 3 cut(s) 324, 325, 657
PspPPI RGGWCCY 1 cut(s) 657
PsuI RGATCY 1 cut(s) 705
RsaI GTAC 4 cut(s) 66, 375, 696, 869
RsaNI GTAC 4 cut(s) 65, 374, 695, 868
SatI GCNGC 2 cut(s) 238, 241
Sau3AI GATC 4 cut(s) 30, 37, 159, 705
Sau96I GGNCC 3 cut(s) 324, 325, 657
SchI GAGTC 5 cut(s) 176, 198, 281, 577, 644
ScrFI CCNGG 1 cut(s) 371
SduI GDGCHC 1 cut(s) 328
SfaNI GCATC 1 cut(s) 523
SinI GGWCC 1 cut(s) 657
SmlI CTYRAG 2 cut(s) 104, 652
SmoI CTYRAG 2 cut(s) 104, 652
Sse9I AATT 7 cut(s) 296, 357, 475, 490, 514, 599, 798
SsiI CCGC 2 cut(s) 237, 240
SspMI CTAG 1 cut(s) 669
StyD4I CCNGG 1 cut(s) 369
TaiI ACGT 1 cut(s) 696
TaqI TCGA 3 cut(s) 135, 500, 619
TasI AATT 7 cut(s) 296, 357, 475, 490, 514, 599, 798
TauI GCSGC 2 cut(s) 240, 243
TfiI GAWTC 1 cut(s) 497
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 2 cut(s) 284, 675
Tsp45I GTSAC 2 cut(s) 284, 675
TspDTI ATGAA 1 cut(s) 374
TspGWI ACGGA 2 cut(s) 138, 210
TspRI CASTG 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 657
XapI RAATTY 3 cut(s) 296, 357, 475
XmiI GTMKAC 1 cut(s) 548
XspI CTAG 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.