Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001140.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

43782 .. 45526

Gene Structure 1745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgaaaagctacccttcaatgcttctcttcacaaccctacaatgctttctaagttcaatccagacgtttgtcattgccatcgctgttgagagaaacccctatcaatggaagctcggatggaatctcaaacttgtggcagtagcttacagcggaattgttgttaccggcattactttccatttacaagcgtgggtaatcgagaagaaggatccagttttcttggctatgtcgacaccattggcttctatcatcacactctttgcttctgcaattctcttgggagaaatcattagtctgggaaggtttttctgtccaataaaaatactacaagctttgcgactcatcaccgttgtgatgcttaaggcttgttttggttttctctctgttttctccatgcctgccgatctcacatgttcctttcatttggtttatcctgactcctttcatctgctcgatctaaagatttggaagaattttgaagctgcttgcgcgccgagcggtggagcagtgactatgcttcttctcgtcgataaggttgctggtggtggcgtggtggctttagtttgggccaacctatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

193

Amino Acids

21.17

Weight (kDa)

8.77

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	6 - 112	2.2e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	230
AccII	CGCG	1 cut(s)	491
AciI	CCGC	2 cut(s)	150, 498
AclWI	GGATC	2 cut(s)	203, 216
AcsI	RAATTY	1 cut(s)	472
AfiI	CCNNNNNNNGG	2 cut(s)	105, 500
AflII	CTTAAG	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	18, 57, 479
AleI	CACNNNNGTG	1 cut(s)	350
AluBI	AGCT	5 cut(s)	9, 112, 143, 332, 482
AluI	AGCT	5 cut(s)	9, 112, 143, 332, 482
AlwI	GGATC	2 cut(s)	203, 216
AoxI	GGCC	1 cut(s)	567
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	1 cut(s)	472
AspLEI	GCGC	2 cut(s)	491, 493
AspS9I	GGNCC	1 cut(s)	567
AsuHPI	GGTGA	1 cut(s)	337
BamHI	GGATCC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	469
BccI	CCATC	2 cut(s)	86, 111
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BfrI	CTTAAG	1 cut(s)	359
BisI	GCNGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	484
BmgT120I	GGNCC	1 cut(s)	567
BmiI	GGNNCC	1 cut(s)	210
BmsI	GCATC	1 cut(s)	345
BoxI	GACNNNNGTC	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 500
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	105, 500
BseMI	GCAATG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	212
BsePI	GCGCGC	1 cut(s)	489
BseXI	GCAGC	1 cut(s)	469
Bsh1236I	CGCG	1 cut(s)	491
BshFI	GGCC	1 cut(s)	569
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	2 cut(s)	105, 500
BsnI	GGCC	1 cut(s)	569
Bsp143I	GATC	3 cut(s)	208, 403, 454
BspACI	CCGC	2 cut(s)	150, 498
BspANI	GGCC	1 cut(s)	569
BspFNI	CGCG	1 cut(s)	491
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	2 cut(s)	203, 216
BspTI	CTTAAG	1 cut(s)	359
BsrBI	CCGCTC	1 cut(s)	498
BsrDI	GCAATG	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	164
BssHII	GCGCGC	1 cut(s)	489
BssMI	GATC	3 cut(s)	208, 403, 454
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	32
BstAFI	CTTAAG	1 cut(s)	359
BstC8I	GCNNGC	3 cut(s)	399, 487, 491
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	491
BstHHI	GCGC	2 cut(s)	491, 493
BstKTI	GATC	3 cut(s)	211, 406, 457
BstMBI	GATC	3 cut(s)	208, 403, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 495
BstNSI	RCATGY	1 cut(s)	414
BstPAI	GACNNNNGTC	1 cut(s)	68
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	469
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	569
BtgZI	GCGATG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	122
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	1 cut(s)	513
Cac8I	GCNNGC	3 cut(s)	399, 487, 491
CfoI	GCGC	2 cut(s)	491, 493
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	567
CviAII	CATG	2 cut(s)	394, 411
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	3 cut(s)	210, 405, 456
DpnII	GATC	3 cut(s)	208, 403, 454
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
FaeI	CATG	2 cut(s)	397, 414
FaiI	YATR	5 cut(s)	227, 395, 412, 515, 577
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	2 cut(s)	393, 410
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	1 cut(s)	483
FokI	GGATG	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	483
GlaI	GCGC	2 cut(s)	490, 492
GluI	GCNGC	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	569
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	2 cut(s)	491, 493
Hin1II	CATG	2 cut(s)	397, 414
Hin6I	GCGC	2 cut(s)	489, 491
HinP1I	GCGC	2 cut(s)	489, 491
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	3 cut(s)	121, 339, 437
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	3 cut(s)	61, 199, 434
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	1 cut(s)	530
HpyAV	CCTTC	3 cut(s)	24, 199, 294
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 495
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	397, 414
HspAI	GCGC	2 cut(s)	489, 491
Kzo9I	GATC	3 cut(s)	208, 403, 454
LmnI	GCTCC	1 cut(s)	503
LpnPI	CCDG	7 cut(s)	74, 178, 225, 281, 411, 447, 525
Lsp1109I	GCAGC	1 cut(s)	469
LweI	GCATC	1 cut(s)	345
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	2 cut(s)	160, 508
MalI	GATC	3 cut(s)	210, 405, 456
MbiI	CCGCTC	1 cut(s)	498
MboI	GATC	3 cut(s)	208, 403, 454
MboII	GAAGA	4 cut(s)	19, 214, 481, 512
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	3 cut(s)	153, 270, 472
MlyI	GAGTC	2 cut(s)	333, 431
MseI	TTAA	2 cut(s)	360, 580
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	150
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	2 cut(s)	488, 495
NdeII	GATC	3 cut(s)	208, 403, 454
NlaIII	CATG	2 cut(s)	397, 414
NlaIV	GGNNCC	1 cut(s)	210
NmeAIII	GCCGAG	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	508
NspI	RCATGY	1 cut(s)	414
OliI	CACNNNNGTG	1 cut(s)	350
PauI	GCGCGC	1 cut(s)	489
PciI	ACATGT	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	484
PleI	GAGTC	2 cut(s)	333, 431
PpsI	GAGTC	2 cut(s)	333, 431
PscI	ACATGT	1 cut(s)	410
PshAI	GACNNNNGTC	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	567
PsuI	RGATCY	1 cut(s)	208
PteI	GCGCGC	1 cut(s)	489
RseI	CAYNNNNRTG	1 cut(s)	350
SalI	GTCGAC	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	360, 580
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	3 cut(s)	208, 403, 454
Sau96I	GGNCC	1 cut(s)	567
SchI	GAGTC	2 cut(s)	333, 431
SetI	ASST	9 cut(s)	11, 68, 114, 145, 305, 334, 484, 537, 576
SfaNI	GCATC	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	3 cut(s)	153, 270, 472
SsiI	CCGC	2 cut(s)	150, 498
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	4 cut(s)	198, 230, 453, 528
TasI	AATT	3 cut(s)	153, 270, 472
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	2 cut(s)	360, 580
Tru9I	TTAA	2 cut(s)	360, 580
TscAI	CASTG	1 cut(s)	513
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	3 cut(s)	17, 410, 434
TspRI	CASTG	1 cut(s)	513
Vha464I	CTTAAG	1 cut(s)	359
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.