Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001143.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19303 .. 21404

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgattcaagcccaagacgtcatcatgccctcacatcaggagatgacaccgccgccaccgcgccgtgactcgtaccgccacatcccatgctgcctcagcctccgcgactcgtaccaccacgctgccatgatcattgcctccacgagccaaacctctgacgccggtcctggaaaccctcgacgaagcatcaacatccactgtgattcagagatgacgcccagaaactccaccaaaccagcataccgcaaccacaaaacagaaaacctctctcccgtgaaagccccgggaaaatatcatcaaaatcccttccggcagcagaccacgaaatattcaatagtggtgacctgcttaccaggtagcctttataaactcgccgccgaggaattcaaagtgcctccccagaccagcgccatcatcaccaacgatggtgttggaattaaccctcagcaaagtgcaggcaatgtattcctcaagcatggttcggaactgcgcctaattcctcgcgatagggttggagcttttgggacaatcaacacagcattaccatccaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071569 GO:0071704 GO:1901564 GO:1990564 GO:1990592

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ufm1

Protein Analysis

184

Amino Acids

20.3

Weight (kDa)

9.44

Isoelectric Point (pI)

56.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufm1	PF03671	123 - 166	1.8e-21	Ubiquitin fold modifier 1 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
AatII	GACGTC	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	353
AccII	CGCG	3 cut(s)	61, 105, 504
AciI	CCGC	7 cut(s)	50, 53, 59, 76, 103, 244, 375
AcsI	RAATTY	1 cut(s)	383
AcyI	GRCGYC	3 cut(s)	18, 159, 215
AfaI	GTAC	2 cut(s)	74, 113
AgsI	TTSAA	3 cut(s)	8, 333, 388
AjnI	CCWGG	2 cut(s)	166, 352
AluBI	AGCT	1 cut(s)	518
AluI	AGCT	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	283
ApeKI	GCWGC	3 cut(s)	90, 122, 313
ApoI	RAATTY	1 cut(s)	383
AspLEI	GCGC	3 cut(s)	63, 410, 492
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	2 cut(s)	284, 285
AsuHPI	GGTGA	2 cut(s)	352, 409
AvaI	CYCGRG	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	164
BauI	CACGAG	1 cut(s)	142
BbvCI	CCTCAGC	2 cut(s)	95, 444
BbvI	GCAGC	3 cut(s)	77, 109, 325
BccI	CCATC	3 cut(s)	419, 419, 553
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	2 cut(s)	168, 354
BclI	TGATCA	1 cut(s)	129
BcnI	CCSGG	2 cut(s)	284, 285
BfoI	RGCGCY	1 cut(s)	411
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	5 cut(s)	53, 91, 123, 314, 375
BlsI	GCNGC	5 cut(s)	54, 92, 124, 315, 376
Bme1390I	CCNGG	4 cut(s)	168, 284, 285, 354
Bme18I	GGWCC	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	164
BmrFI	CCNGG	4 cut(s)	168, 284, 285, 354
BmsI	GCATC	1 cut(s)	195
BoxI	GACNNNNGTC	1 cut(s)	162
Bpu10I	CCTNAGC	2 cut(s)	95, 444
BpuEI	CTTGAG	1 cut(s)	455
BpuMI	CCSGG	2 cut(s)	284, 285
BsaHI	GRCGYC	3 cut(s)	18, 159, 215
BsaJI	CCNNGG	3 cut(s)	282, 283, 378
Bse118I	RCCGGY	1 cut(s)	161
Bse3DI	GCAATG	2 cut(s)	132, 466
BseBI	CCWGG	2 cut(s)	168, 354
BseDI	CCNNGG	3 cut(s)	282, 283, 378
BseGI	GGATG	3 cut(s)	81, 192, 545
BseMI	GCAATG	2 cut(s)	132, 466
BseMII	CTCAG	2 cut(s)	109, 458
BseXI	GCAGC	3 cut(s)	77, 109, 325
BsgI	GTGCAG	1 cut(s)	474
Bsh1236I	CGCG	3 cut(s)	61, 105, 504
BsiHKCI	CYCGRG	1 cut(s)	283
BsiSI	CCGG	3 cut(s)	162, 284, 310
BslFI	GGGAC	1 cut(s)	538
BsmFI	GGGAC	1 cut(s)	538
BsoBI	CYCGRG	1 cut(s)	283
Bsp143I	GATC	1 cut(s)	129
Bsp68I	TCGCGA	1 cut(s)	504
BspACI	CCGC	7 cut(s)	50, 53, 59, 76, 103, 244, 375
BspCNI	CTCAG	2 cut(s)	108, 457
BspFNI	CGCG	3 cut(s)	61, 105, 504
BspMI	ACCTGC	1 cut(s)	353
BsrDI	GCAATG	2 cut(s)	132, 466
BsrFI	RCCGGY	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	3 cut(s)	282, 283, 378
BssMI	GATC	1 cut(s)	129
BssNI	GRCGYC	3 cut(s)	18, 159, 215
BssSI	CACGAG	1 cut(s)	142
Bst2BI	CACGAG	1 cut(s)	142
Bst2UI	CCWGG	2 cut(s)	168, 354
Bst4CI	ACNGT	1 cut(s)	200
BstACI	GRCGYC	3 cut(s)	18, 159, 215
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	2 cut(s)	95, 444
BstEII	GGTNACC	1 cut(s)	340
BstF5I	GGATG	3 cut(s)	81, 192, 545
BstFNI	CGCG	3 cut(s)	61, 105, 504
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	3 cut(s)	63, 410, 492
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 96
BstNI	CCWGG	2 cut(s)	168, 354
BstPAI	GACNNNNGTC	1 cut(s)	162
BstPI	GGTNACC	1 cut(s)	340
BstSCI	CCNGG	4 cut(s)	166, 282, 283, 352
BstUI	CGCG	3 cut(s)	61, 105, 504
BstV1I	GCAGC	3 cut(s)	77, 109, 325
BtsCI	GGATG	3 cut(s)	81, 192, 545
BtsIMutI	CAGTG	1 cut(s)	196
BtuMI	TCGCGA	1 cut(s)	504
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	457
CfoI	GCGC	3 cut(s)	63, 410, 492
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	164
Cfr9I	CCCGGG	1 cut(s)	283
CseI	GACGC	2 cut(s)	167, 223
CsiI	ACCWGGT	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	73, 112
CviAII	CATG	4 cut(s)	25, 87, 127, 476
CviJI	RGCY	6 cut(s)	11, 99, 147, 281, 360, 518
CviKI_1	RGCY	6 cut(s)	11, 99, 147, 281, 360, 518
CviQI	GTAC	2 cut(s)	73, 112
DdeI	CTNAG	2 cut(s)	95, 444
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	283
Eco91I	GGTNACC	1 cut(s)	340
EcoO65I	GGTNACC	1 cut(s)	340
EcoRI	GAATTC	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	166, 352
FaeI	CATG	4 cut(s)	28, 90, 130, 479
FaiI	YATR	6 cut(s)	26, 88, 128, 241, 366, 477
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	4 cut(s)	24, 86, 126, 475
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	5 cut(s)	53, 91, 123, 314, 375
FokI	GGATG	3 cut(s)	68, 179, 532
Fsp4HI	GCNGC	5 cut(s)	53, 91, 123, 314, 375
GlaI	GCGC	3 cut(s)	62, 409, 491
GluI	GCNGC	5 cut(s)	53, 91, 123, 314, 375
HaeII	RGCGCY	1 cut(s)	411
HapII	CCGG	3 cut(s)	162, 284, 310
HgaI	GACGC	2 cut(s)	167, 223
HhaI	GCGC	3 cut(s)	63, 410, 492
Hin1I	GRCGYC	3 cut(s)	18, 159, 215
Hin1II	CATG	4 cut(s)	28, 90, 130, 479
Hin6I	GCGC	3 cut(s)	61, 408, 490
HinP1I	GCGC	3 cut(s)	61, 408, 490
HinfI	GANTC	4 cut(s)	4, 68, 107, 203
HpaII	CCGG	3 cut(s)	162, 284, 310
HphI	GGTGA	2 cut(s)	352, 409
Hpy188I	TCNGA	3 cut(s)	157, 208, 484
Hpy188III	TCNNGA	2 cut(s)	38, 503
Hpy99I	CGWCG	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 96
HpyF3I	CTNAG	2 cut(s)	95, 444
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	3 cut(s)	18, 159, 215
Hsp92II	CATG	4 cut(s)	28, 90, 130, 479
HspAI	GCGC	3 cut(s)	61, 408, 490
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	515
Lsp1109I	GCAGC	3 cut(s)	77, 109, 325
LweI	GCATC	1 cut(s)	195
MabI	ACCWGGT	1 cut(s)	352
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	65, 340
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MluCI	AATT	3 cut(s)	383, 435, 495
MlyI	GAGTC	2 cut(s)	62, 101
MmeI	TCCRAC	2 cut(s)	412, 493
MseI	TTAA	1 cut(s)	438
MspI	CCGG	3 cut(s)	162, 284, 310
MspR9I	CCNGG	4 cut(s)	168, 284, 285, 354
MvaI	CCWGG	2 cut(s)	168, 354
MvnI	CGCG	3 cut(s)	61, 105, 504
MwoI	GCNNNNNNNGC	2 cut(s)	58, 96
NciI	CCSGG	2 cut(s)	284, 285
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	4 cut(s)	28, 90, 130, 479
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	2 cut(s)	65, 340
NruI	TCGCGA	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	4, 203
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	5 cut(s)	54, 92, 124, 315, 376
PleI	GAGTC	2 cut(s)	62, 101
PpsI	GAGTC	2 cut(s)	62, 101
PshAI	GACNNNNGTC	1 cut(s)	162
PsiI	TTATAA	1 cut(s)	366
Psp6I	CCWGG	2 cut(s)	166, 352
PspEI	GGTNACC	1 cut(s)	340
PspGI	CCWGG	2 cut(s)	166, 352
PspPI	GGNCC	1 cut(s)	164
RruI	TCGCGA	1 cut(s)	504
RsaI	GTAC	2 cut(s)	74, 113
RsaNI	GTAC	2 cut(s)	73, 112
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	5 cut(s)	53, 91, 123, 314, 375
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	2 cut(s)	62, 101
ScrFI	CCNGG	4 cut(s)	168, 284, 285, 354
SetI	ASST	6 cut(s)	21, 155, 267, 347, 358, 520
SexAI	ACCWGGT	1 cut(s)	352
SfaNI	GCATC	1 cut(s)	195
SinI	GGWCC	1 cut(s)	164
SmaI	CCCGGG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	3 cut(s)	383, 435, 495
SsiI	CCGC	7 cut(s)	50, 53, 59, 76, 103, 244, 375
SspI	AATATT	1 cut(s)	329
StyD4I	CCNGG	4 cut(s)	166, 282, 283, 352
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	178
TasI	AATT	3 cut(s)	383, 435, 495
TauI	GCSGC	2 cut(s)	55, 377
TfiI	GAWTC	2 cut(s)	4, 203
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	203
TseFI	GTSAC	2 cut(s)	65, 340
TseI	GCWGC	3 cut(s)	90, 122, 313
Tsp45I	GTSAC	2 cut(s)	65, 340
TspMI	CCCGGG	1 cut(s)	283
TspRI	CASTG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	383
XmaI	CCCGGG	1 cut(s)	283
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.