Rmu_sc0001143.1_g000011

At2g17340-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001143.1
N/A
Physical Location & Seq
Forward (+)
45784 .. 46439
656 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 309 bp
atgaaagactgctccggcgccatcgaccacttcaggtacttcaatctcttcctcaattattgtttgtgtgaaattgaaggtctgggtttcagtttaattgtcaagggtagacttcgtgagcaaattcttagggagttggggttcagagatatattcaagaaagtcaaggatgaagagaatgcaaaggccataaccctgattgagaatgtggtggatcttaatgatgctattgaagatgaaggcaagcgggtagagaatctgattagagggttatttgctggaaacatatttgatcttggttctgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.63

Weight (kDa)

4.99

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMT1-like_dom PF01937 25 - 101 7.6e-15 Damage-control phosphatase ARMT1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 109
AciI CCGC 1 cut(s) 247
AclWI GGATC 1 cut(s) 222
AcsI RAATTY 1 cut(s) 123
AcuI CTGAAG 1 cut(s) 16
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 1 cut(s) 38
AgsI TTSAA 4 cut(s) 43, 77, 157, 233
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AlwI GGATC 1 cut(s) 222
AoxI GGCC 1 cut(s) 186
ApoI RAATTY 1 cut(s) 123
AspLEI GCGC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 17
BccI CCATC 1 cut(s) 29
BfoI RGCGCY 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 19
BmsI GCATC 1 cut(s) 214
BsaHI GRCGYC 1 cut(s) 18
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
BseGI GGATG 1 cut(s) 175
BshFI GGCC 1 cut(s) 188
BshNI GGYRCC 1 cut(s) 17
BsiSI CCGG 1 cut(s) 15
BsmI GAATGC 1 cut(s) 184
BsnI GGCC 1 cut(s) 188
Bsp143I GATC 2 cut(s) 214, 292
BspACI CCGC 1 cut(s) 247
BspANI GGCC 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 17
BssMI GATC 2 cut(s) 214, 292
BssNI GRCGYC 1 cut(s) 18
Bst6I CTCTTC 2 cut(s) 53, 168
BstACI GRCGYC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 175
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 2 cut(s) 217, 295
BstMBI GATC 2 cut(s) 214, 292
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 245
CfoI GCGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 37
CviJI RGCY 1 cut(s) 188
CviKI_1 RGCY 1 cut(s) 188
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 1 cut(s) 128
DinI GGCGCC 1 cut(s) 19
DpnI GATC 2 cut(s) 216, 294
DpnII GATC 2 cut(s) 214, 292
Eam1104I CTCTTC 2 cut(s) 53, 168
EarI CTCTTC 2 cut(s) 53, 168
Eco57I CTGAAG 1 cut(s) 16
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
FaiI YATR 4 cut(s) 152, 191, 287, 307
FauI CCCGC 1 cut(s) 240
FblI GTMKAC 1 cut(s) 109
FokI GGATG 1 cut(s) 182
GlaI GCGC 1 cut(s) 19
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 1 cut(s) 188
HapII CCGG 1 cut(s) 15
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 18
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 1 cut(s) 256
HpaII CCGG 1 cut(s) 15
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 146, 261
Hpy188III TCNNGA 2 cut(s) 116, 157
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 71, 233
HpyCH4V TGCA 2 cut(s) 182, 305
HpyF3I CTNAG 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 18
HspAI GCGC 1 cut(s) 18
KasI GGCGCC 1 cut(s) 17
Kzo9I GATC 2 cut(s) 214, 292
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 5 cut(s) 19, 28, 68, 209, 264
LweI GCATC 1 cut(s) 214
MalI GATC 2 cut(s) 216, 294
MboI GATC 2 cut(s) 214, 292
MboII GAAGA 3 cut(s) 40, 185, 245
MflI RGATCY 1 cut(s) 214
MluCI AATT 4 cut(s) 55, 72, 96, 123
Mly113I GGCGCC 1 cut(s) 18
MnlI CCTC 2 cut(s) 62, 260
MseI TTAA 2 cut(s) 95, 219
MspI CCGG 1 cut(s) 15
Mva1269I GAATGC 1 cut(s) 184
NarI GGCGCC 1 cut(s) 18
NdeII GATC 2 cut(s) 214, 292
NlaIV GGNNCC 1 cut(s) 19
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 256
PluTI GGCGCC 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 19
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SaqAI TTAA 2 cut(s) 95, 219
Sau3AI GATC 2 cut(s) 214, 292
SetI ASST 2 cut(s) 38, 82
SfaNI GCATC 1 cut(s) 214
SfoI GGCGCC 1 cut(s) 19
Sse9I AATT 4 cut(s) 55, 72, 96, 123
SsiI CCGC 1 cut(s) 247
SspDI GGCGCC 1 cut(s) 17
TaqI TCGA 1 cut(s) 24
TasI AATT 4 cut(s) 55, 72, 96, 123
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 2 cut(s) 95, 219
Tru9I TTAA 2 cut(s) 95, 219
TspDTI ATGAA 3 cut(s) 17, 186, 252
XapI RAATTY 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.