Rmu_sc0001149.1_g000025

formamidase C869.04 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001149.1
N/A
Physical Location & Seq
Reverse (-)
68351 .. 71442
3092 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 714 bp
atggctcttgggactccaagatttgtagttccgatagacttgggcagcaaaccatggcagcgaaagctacctcttcacaaccgttggcaccccgacatacccccagtcgctgaggtcaaaacaggagatgaatggggtttcacaagaacattcgacagagaaaatggaggtggttttctgactgaccattttcctagtgcaaccaaagctatttgtgaggtgattttggcgcggagcatcagcggtgatctgggagtgagcctgggctcaagtgatagcctgcttggctgtgcttccgtaggtcacaccgttagtggttgttggtaccactggcgggggatctgcgctaagcagagggcgttgggtagcgagcccaatatttggtacccgagtgtcggggctgaacggggcttgactgcaactccgcgtggcggccattgtaattatgaggtgttacctcgggcgtcgccattgacggaagtcgctccgttgatggtcagtggagctatgcattggagggattctcacttgcaaggcgaagggagaagtttcgctagcagtgttgcacctagcggagactgtctcgcttgcaagatgaaggtagaagttccgctgacgatgttgcacgtagcagagactatctcttgcaagatgaagggagaagttccgcttgcggtgttgcgcccagcggagactatctctcttgcaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00630 ko00910 ko01200 map00460 map00630 map00910 map01200
Pfam Domains
Protein Families
FmdA_AmdA

Protein Analysis

237

Amino Acids

25.57

Weight (kDa)

8.14

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FmdA_AmdA PF03069 12 - 43 1.5e-06 Acetamidase/Formamidase family
FmdA_AmdA PF03069 43 - 74 5.8e-07 Acetamidase/Formamidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 324, 384
AccB1I GGYRCC 3 cut(s) 87, 324, 384
AccB7I CCANNNNNTGG 1 cut(s) 381
AccII CGCG 2 cut(s) 232, 427
AclWI GGATC 1 cut(s) 347
AcoI YGGCCR 1 cut(s) 433
AcyI GRCGYC 1 cut(s) 464
AfaI GTAC 2 cut(s) 326, 386
AfiI CCNNNNNNNGG 4 cut(s) 334, 381, 395, 431
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 3 cut(s) 67, 209, 506
AluI AGCT 3 cut(s) 67, 209, 506
Alw26I GTCTC 4 cut(s) 570, 587, 629, 686
AlwI GGATC 1 cut(s) 347
AlwNI CAGNNNCTG 1 cut(s) 110
Ama87I CYCGRG 2 cut(s) 388, 459
AoxI GGCC 1 cut(s) 433
ApeKI GCWGC 2 cut(s) 45, 58
Asp718I GGTACC 2 cut(s) 324, 384
AspLEI GCGC 3 cut(s) 232, 347, 684
AsuHPI GGTGA 2 cut(s) 232, 257
AsuNHI GCTAGC 1 cut(s) 554
AvaI CYCGRG 2 cut(s) 388, 459
BaeI ACNNNNGTAYC 2 cut(s) 376, 409
BanI GGYRCC 3 cut(s) 87, 324, 384
BanII GRGCYC 2 cut(s) 269, 375
BbvCI CCTCAGC 1 cut(s) 111
BbvI GCAGC 2 cut(s) 57, 70
BccI CCATC 1 cut(s) 487
BciT130I CCWGG 1 cut(s) 263
BcoDI GTCTC 4 cut(s) 570, 587, 629, 686
BfaI CTAG 3 cut(s) 195, 555, 570
BglI GCCNNNNNGGC 1 cut(s) 285
BisI GCNGC 3 cut(s) 46, 59, 433
BlpI GCTNAGC 1 cut(s) 348
BlsI GCNGC 3 cut(s) 47, 60, 434
Bme1390I CCNGG 1 cut(s) 263
BmeT110I CYCGRG 2 cut(s) 388, 459
BmiI GGNNCC 3 cut(s) 89, 326, 386
BmrFI CCNGG 1 cut(s) 263
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 246
BmtI GCTAGC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 98
BoxI GACNNNNGTC 1 cut(s) 479
BplI GAGNNNNNCTC 7 cut(s) 508, 540, 567, 599, 626, 658, 683
Bpu10I CCTNAGC 1 cut(s) 111
Bpu1102I GCTNAGC 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 253
BsaAI YACGTR 1 cut(s) 628
BsaHI GRCGYC 1 cut(s) 464
BsaJI CCNNGG 3 cut(s) 53, 262, 458
BsaXI ACNNNNNCTCC 2 cut(s) 406, 436
Bsc4I CCNNNNNNNGG 4 cut(s) 334, 381, 395, 431
Bse1I ACTGG 2 cut(s) 104, 335
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 3 cut(s) 53, 262, 458
BseLI CCNNNNNNNGG 4 cut(s) 334, 381, 395, 431
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 2 cut(s) 104, 335
BseXI GCAGC 2 cut(s) 57, 70
BseYI CCCAGC 1 cut(s) 685
Bsh1236I CGCG 2 cut(s) 232, 427
BshFI GGCC 1 cut(s) 435
BshNI GGYRCC 3 cut(s) 87, 324, 384
BsiHKCI CYCGRG 2 cut(s) 388, 459
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 4 cut(s) 334, 381, 395, 431
BsmAI GTCTC 4 cut(s) 570, 587, 629, 686
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 1 cut(s) 435
BsoBI CYCGRG 2 cut(s) 388, 459
Bsp1286I GDGCHC 2 cut(s) 269, 375
Bsp143I GATC 2 cut(s) 247, 339
Bsp1720I GCTNAGC 1 cut(s) 348
Bsp19I CCATGG 1 cut(s) 53
BspANI GGCC 1 cut(s) 435
BspCNI CTCAG 1 cut(s) 103
BspFNI CGCG 2 cut(s) 232, 427
BspLI GGNNCC 3 cut(s) 89, 326, 386
BspOI GCTAGC 1 cut(s) 558
BspPI GGATC 1 cut(s) 347
BspT107I GGYRCC 3 cut(s) 87, 324, 384
BsrI ACTGG 2 cut(s) 104, 335
BssECI CCNNGG 3 cut(s) 53, 262, 458
BssMI GATC 2 cut(s) 247, 339
BssNI GRCGYC 1 cut(s) 464
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 3 cut(s) 83, 310, 581
Bst6I CTCTTC 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 628
BstC8I GCNNGC 5 cut(s) 281, 371, 556, 589, 672
BstDEI CTNAG 2 cut(s) 111, 348
BstDSI CCRYGG 1 cut(s) 53
BstFNI CGCG 2 cut(s) 232, 427
BstHHI GCGC 3 cut(s) 232, 347, 684
BstKTI GATC 2 cut(s) 250, 342
BstMAI GTCTC 4 cut(s) 570, 587, 629, 686
BstMBI GATC 2 cut(s) 247, 339
BstMWI GCNNNNNNNGC 3 cut(s) 64, 206, 285
BstNI CCWGG 1 cut(s) 263
BstPAI GACNNNNGTC 1 cut(s) 479
BstSCI CCNGG 1 cut(s) 261
BstUI CGCG 2 cut(s) 232, 427
BstV1I GCAGC 2 cut(s) 57, 70
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BsuRI GGCC 1 cut(s) 435
BtgI CCRYGG 1 cut(s) 53
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 3 cut(s) 328, 505, 565
Cac8I GCNNGC 5 cut(s) 281, 371, 556, 589, 672
CaiI CAGNNNCTG 1 cut(s) 110
CfoI GCGC 3 cut(s) 232, 347, 684
CseI GACGC 1 cut(s) 453
Csp6I GTAC 2 cut(s) 325, 385
CviAII CATG 1 cut(s) 54
CviQI GTAC 2 cut(s) 325, 385
DdeI CTNAG 2 cut(s) 111, 348
DpnI GATC 2 cut(s) 249, 341
DpnII GATC 2 cut(s) 247, 339
EaeI YGGCCR 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 53
Eco24I GRGCYC 2 cut(s) 269, 375
Eco88I CYCGRG 2 cut(s) 388, 459
EcoRII CCWGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 53
EcoT22I ATGCAT 1 cut(s) 513
EcoT38I GRGCYC 2 cut(s) 269, 375
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 1 cut(s) 57
FaiI YATR 4 cut(s) 55, 98, 447, 509
FalI AAGNNNNNCTT 2 cut(s) 654, 686
FaqI GGGAC 1 cut(s) 25
FatI CATG 1 cut(s) 53
FauI CCCGC 1 cut(s) 327
Fnu4HI GCNGC 3 cut(s) 46, 59, 433
FriOI GRGCYC 2 cut(s) 269, 375
Fsp4HI GCNGC 3 cut(s) 46, 59, 433
FspBI CTAG 3 cut(s) 195, 555, 570
GlaI GCGC 3 cut(s) 231, 346, 683
GluI GCNGC 3 cut(s) 46, 59, 433
GsaI CCCAGC 1 cut(s) 689
HaeIII GGCC 1 cut(s) 435
HgaI GACGC 1 cut(s) 453
HhaI GCGC 3 cut(s) 232, 347, 684
Hin1I GRCGYC 1 cut(s) 464
Hin1II CATG 1 cut(s) 57
Hin6I GCGC 3 cut(s) 230, 345, 682
HinP1I GCGC 3 cut(s) 230, 345, 682
HinfI GANTC 2 cut(s) 13, 521
HphI GGTGA 2 cut(s) 232, 257
Hpy188I TCNGA 2 cut(s) 33, 180
Hpy99I CGWCG 1 cut(s) 469
HpyAV CCTTC 3 cut(s) 533, 592, 649
HpyCH4III ACNGT 3 cut(s) 83, 310, 581
HpyCH4IV ACGT 1 cut(s) 627
HpyCH4V TGCA 9 cut(s) 200, 419, 511, 532, 566, 591, 625, 648, 707
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 206, 285
HpyF3I CTNAG 2 cut(s) 111, 348
HpySE526I ACGT 1 cut(s) 627
Hsp92I GRCGYC 1 cut(s) 464
Hsp92II CATG 1 cut(s) 57
HspAI GCGC 3 cut(s) 230, 345, 682
KpnI GGTACC 2 cut(s) 328, 388
Kzo9I GATC 2 cut(s) 247, 339
LmnI GCTCC 3 cut(s) 234, 490, 503
LpnPI CCDG 8 cut(s) 108, 117, 236, 248, 275, 293, 316, 699
Lsp1109I GCAGC 2 cut(s) 57, 70
LweI GCATC 1 cut(s) 246
MaeI CTAG 3 cut(s) 195, 555, 570
MaeII ACGT 1 cut(s) 627
MaeIII GTNAC 2 cut(s) 302, 453
MalI GATC 2 cut(s) 249, 341
MboI GATC 2 cut(s) 247, 339
MboII GAAGA 1 cut(s) 65
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 2 cut(s) 269, 375
MluCI AATT 1 cut(s) 442
MlyI GAGTC 1 cut(s) 7
MnlI CCTC 8 cut(s) 81, 106, 161, 211, 348, 442, 468, 510
Mph1103I ATGCAT 1 cut(s) 513
MspA1I CMGCKG 3 cut(s) 243, 613, 689
MspR9I CCNGG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 263
MvnI CGCG 2 cut(s) 232, 427
MwoI GCNNNNNNNGC 3 cut(s) 64, 206, 285
NcoI CCATGG 1 cut(s) 53
NdeII GATC 2 cut(s) 247, 339
NheI GCTAGC 1 cut(s) 554
NlaIII CATG 1 cut(s) 57
NlaIV GGNNCC 3 cut(s) 89, 326, 386
NmuCI GTSAC 1 cut(s) 302
NsiI ATGCAT 1 cut(s) 513
PfeI GAWTC 1 cut(s) 521
PflMI CCANNNNNTGG 1 cut(s) 381
PkrI GCNGC 3 cut(s) 47, 60, 434
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
Ppu21I YACGTR 1 cut(s) 628
PshAI GACNNNNGTC 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 685
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 3 cut(s) 89, 326, 386
PstNI CAGNNNCTG 1 cut(s) 110
PsuI RGATCY 1 cut(s) 339
RsaI GTAC 2 cut(s) 326, 386
RsaNI GTAC 2 cut(s) 325, 385
SatI GCNGC 3 cut(s) 46, 59, 433
Sau3AI GATC 2 cut(s) 247, 339
SchI GAGTC 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 263
SduI GDGCHC 2 cut(s) 269, 375
SfaNI GCATC 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 1 cut(s) 442
SspI AATATT 1 cut(s) 379
SspMI CTAG 3 cut(s) 195, 555, 570
StyD4I CCNGG 1 cut(s) 261
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 3 cut(s) 83, 310, 581
TaiI ACGT 1 cut(s) 630
TaqI TCGA 1 cut(s) 153
TasI AATT 1 cut(s) 442
TauI GCSGC 1 cut(s) 435
TfiI GAWTC 1 cut(s) 521
TscAI CASTG 3 cut(s) 335, 505, 565
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 2 cut(s) 45, 58
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 3 cut(s) 144, 611, 668
TspGWI ACGGA 3 cut(s) 286, 477, 491
TspRI CASTG 3 cut(s) 335, 505, 565
Van91I CCANNNNNTGG 1 cut(s) 381
XspI CTAG 3 cut(s) 195, 555, 570
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.