Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001161.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

35438 .. 42705

Gene Structure 7268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgggaggtgatcggtgggtcttggccggcgatgaaacatgcccattggacggtggtgagggccggagtcgatggggagatgacgctagagaagaggtgcagcggattgagatcctttgccatgatatcaatgtccatattccccatcatatatctccaaggattccaagctataacttaggggggcaacatgaacttccgtttggttcatatgttccacacgagaatgttaattatccttataatttgcctattccaagcttcaacatgacctgtttagaggttcatgatgcacttgtgagattggggaagaatggtgtggtggatggtttggaattgggtgctcagactttgcaaaggaagtttttgaggaaagctcattcagttgaagaaattctgaaaggactatgttgctactttgacaaagcattgccagttatcctaattctttacaaaaatgagcgtccgcagtatgagaaagcaattgcagataatgtctctccttcatctgtatacggtgctgagcatctattacgcctctttgttaaactgcccgagctattggttgaggctaacattgaagaggagactttgaaagagctgctgcaaagattggccgactttctcaagtactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016575 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0035601 GO:0036211 GO:0040029 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1990188 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

211

Amino Acids

23.94

Weight (kDa)

5.47

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRG	PF05712	123 - 211	2e-23	MRG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	513
AciI	CCGC	2 cut(s)	103, 467
AclWI	GGATC	1 cut(s)	106
AcoI	YGGCCR	2 cut(s)	24, 615
AcsI	RAATTY	1 cut(s)	393
AfaI	GTAC	1 cut(s)	632
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	4 cut(s)	265, 389, 581, 595
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	5 cut(s)	171, 261, 377, 559, 601
AluI	AGCT	5 cut(s)	171, 261, 377, 559, 601
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	2 cut(s)	502, 581
AlwI	GGATC	1 cut(s)	106
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	3 cut(s)	24, 61, 615
ApeKI	GCWGC	3 cut(s)	100, 601, 604
ApoI	RAATTY	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	20, 68
AvaI	CYCGRG	1 cut(s)	554
BauI	CACGAG	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	3 cut(s)	112, 588, 591
BccI	CCATC	3 cut(s)	66, 153, 320
BcoDI	GTCTC	2 cut(s)	502, 581
BfaI	CTAG	1 cut(s)	87
BisI	GCNGC	3 cut(s)	101, 602, 605
BlpI	GCTNAGC	1 cut(s)	522
BlsI	GCNGC	3 cut(s)	102, 603, 606
BmcAI	AGTACT	1 cut(s)	632
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	61
BmsI	GCATC	2 cut(s)	280, 535
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
Bpu1102I	GCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	611
BsaBI	GATNNNNATC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	434
Bse3DI	GCAATG	1 cut(s)	428
Bse8I	GATNNNNATC	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	331
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	428
BseMII	CTCAG	2 cut(s)	359, 513
BseNI	ACTGG	1 cut(s)	434
BseRI	GAGGAG	1 cut(s)	599
BseXI	GCAGC	3 cut(s)	112, 588, 591
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	3 cut(s)	26, 63, 617
BsiHKAI	GWGCWC	1 cut(s)	346
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	2 cut(s)	27, 64
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	2 cut(s)	502, 581
BsnI	GGCC	3 cut(s)	26, 63, 617
BsoBI	CYCGRG	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	10, 111
Bsp1720I	GCTNAGC	1 cut(s)	522
BspACI	CCGC	2 cut(s)	103, 467
BspANI	GGCC	3 cut(s)	26, 63, 617
BspCNI	CTCAG	2 cut(s)	358, 514
BspHI	TCATGA	1 cut(s)	286
BspPI	GGATC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	428
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	434
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	2 cut(s)	10, 111
BssNAI	GTATAC	1 cut(s)	514
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	158
Bst1107I	GTATAC	1 cut(s)	514
Bst2BI	CACGAG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	53, 518
Bst6I	CTCTTC	2 cut(s)	87, 576
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	3 cut(s)	178, 345, 522
BstF5I	GGATG	1 cut(s)	331
BstKTI	GATC	2 cut(s)	13, 114
BstMAI	GTCTC	2 cut(s)	502, 581
BstMBI	GATC	2 cut(s)	10, 111
BstNSI	RCATGY	1 cut(s)	42
BstV1I	GCAGC	3 cut(s)	112, 588, 591
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BstZ17I	GTATAC	1 cut(s)	514
BsuRI	GGCC	3 cut(s)	26, 63, 617
BtgZI	GCGATG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	28
CciI	TCATGA	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	61
CseI	GACGC	2 cut(s)	92, 452
Csp6I	GTAC	1 cut(s)	631
CviAII	CATG	5 cut(s)	39, 122, 191, 268, 287
CviJI	RGCY	9 cut(s)	26, 63, 171, 261, 377, 559, 572, 601, 617
CviKI_1	RGCY	9 cut(s)	26, 63, 171, 261, 377, 559, 572, 601, 617
CviQI	GTAC	1 cut(s)	631
DdeI	CTNAG	3 cut(s)	178, 345, 522
DpnI	GATC	2 cut(s)	12, 113
DpnII	GATC	2 cut(s)	10, 111
EaeI	YGGCCR	2 cut(s)	24, 615
Eam1104I	CTCTTC	2 cut(s)	87, 576
EarI	CTCTTC	2 cut(s)	87, 576
Eco130I	CCWWGG	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	554
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	158
FaeI	CATG	5 cut(s)	42, 125, 194, 271, 290
FatI	CATG	5 cut(s)	38, 121, 190, 267, 286
FauNDI	CATATG	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	513
Fnu4HI	GCNGC	3 cut(s)	101, 602, 605
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	3 cut(s)	101, 602, 605
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	3 cut(s)	101, 602, 605
HaeIII	GGCC	3 cut(s)	26, 63, 617
HapII	CCGG	2 cut(s)	27, 64
HgaI	GACGC	2 cut(s)	92, 452
Hin1II	CATG	5 cut(s)	42, 125, 194, 271, 290
HindIII	AAGCTT	1 cut(s)	259
HinfI	GANTC	2 cut(s)	67, 163
HpaII	CCGG	2 cut(s)	27, 64
HphI	GGTGA	2 cut(s)	20, 68
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	2 cut(s)	348, 399
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	1 cut(s)	513
HpyCH4III	ACNGT	2 cut(s)	53, 518
HpyCH4V	TGCA	5 cut(s)	100, 293, 355, 488, 607
HpyF3I	CTNAG	3 cut(s)	178, 345, 522
Hsp92II	CATG	5 cut(s)	42, 125, 194, 271, 290
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	10, 111
LpnPI	CCDG	4 cut(s)	40, 77, 286, 447
Lsp1109I	GCAGC	3 cut(s)	112, 588, 591
LweI	GCATC	2 cut(s)	280, 535
MaeI	CTAG	1 cut(s)	87
MalI	GATC	2 cut(s)	12, 113
MboI	GATC	2 cut(s)	10, 111
MboII	GAAGA	4 cut(s)	104, 322, 401, 593
MfeI	CAATTG	1 cut(s)	483
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	6 cut(s)	232, 244, 335, 393, 444, 483
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	7 cut(s)	52, 88, 274, 363, 548, 562, 577
MroNI	GCCGGC	1 cut(s)	26
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	2 cut(s)	231, 546
MslI	CAYNNNNRTG	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	103
MspI	CCGG	2 cut(s)	27, 64
MunI	CAATTG	1 cut(s)	483
NaeI	GCCGGC	1 cut(s)	28
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	2 cut(s)	10, 111
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	5 cut(s)	42, 125, 194, 271, 290
NspI	RCATGY	1 cut(s)	42
PagI	TCATGA	1 cut(s)	286
PdiI	GCCGGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	102, 603, 606
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PsiI	TTATAA	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	1 cut(s)	632
RsaNI	GTAC	1 cut(s)	631
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	231, 546
SatI	GCNGC	3 cut(s)	101, 602, 605
Sau3AI	GATC	2 cut(s)	10, 111
Sau96I	GGNCC	1 cut(s)	61
ScaI	AGTACT	1 cut(s)	632
SchI	GAGTC	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	346
SetI	ASST	9 cut(s)	10, 99, 173, 263, 275, 285, 379, 561, 603
SfaNI	GCATC	2 cut(s)	280, 535
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
Sse9I	AATT	6 cut(s)	232, 244, 335, 393, 444, 483
SsiI	CCGC	2 cut(s)	103, 467
SspMI	CTAG	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	158
TaaI	ACNGT	2 cut(s)	53, 518
TaqI	TCGA	1 cut(s)	70
TasI	AATT	6 cut(s)	232, 244, 335, 393, 444, 483
TatI	WGTACW	1 cut(s)	630
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	231, 546
Tru9I	TTAA	2 cut(s)	231, 546
TseI	GCWGC	3 cut(s)	100, 601, 604
TspDTI	ATGAA	5 cut(s)	48, 198, 207, 275, 495
TspGWI	ACGGA	1 cut(s)	189
XapI	RAATTY	1 cut(s)	393
XceI	RCATGY	1 cut(s)	42
XmiI	GTMKAC	1 cut(s)	513
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.