Rmu_sc0001167.1_g000015

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001167.1
N/A
Physical Location & Seq
Reverse (-)
41152 .. 46986
5835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001167.1_g000015.1.cds

Sequence Viewer

Length: 795 bp
atgttgctcaagataagttgtgcaaaaccattaaagatcgctcctattaggtttggcaactttggtgaagccttggattgcatgcaagtggctgcacggtgcatgtttggggaaatagttgttatccaagggtcaagttggagtggttgtgaaacttggcaaactagtttggctattgagtgcaagaggcgcattgagccgaggcgttttcgggagagcctcaagaaggcgttcgccttgaggcgtaaggccaataattttcatggaaagattccggaatttatggggaacttgaaagggcttcgctttctcaacatttccaataacatcttcaacggcagcatcccatcaaatcagccctcaggagagacccctcagcaactagctcagcttacatcttttgcgcattttaatgtctcttacaacaatctcacaggttctgtaccacaaggacccttgtttcacacattcgagagcacttcattcaagggaaaccgaagattgtgtggagacctgtggccaaagaaatgtgcagactctaatgttccaactcaattactgccaccttctagcagcattgatgaaaatgtttcaggctccgctcttgaatttgacaggaagtttgttggctggacttggaagtgggtttgttggacaagagatcgtcacaggttggactgcgtcgtcggagagagcttgggccagagaaaggagtcgtcgcgggtgagctgcttgcggaggagaatggcggacatggcccgggcttcccgcgcctacgagaacaggaggaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

264

Amino Acids

30.0

Weight (kDa)

10.01

Isoelectric Point (pI)

51.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 683
Acc16I TGCGCA 1 cut(s) 405
AccBSI CCGCTC 1 cut(s) 602
AccII CGCG 2 cut(s) 721, 771
AccIII TCCGGA 1 cut(s) 274
AciI CCGC 5 cut(s) 600, 721, 736, 749, 769
AcoI YGGCCR 1 cut(s) 518
AcsI RAATTY 2 cut(s) 278, 608
AfaI GTAC 1 cut(s) 444
AfiI CCNNNNNNNGG 2 cut(s) 226, 709
AgsI TTSAA 4 cut(s) 295, 334, 487, 608
AhlI ACTAGT 1 cut(s) 164
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 4 cut(s) 386, 391, 696, 729
AluI AGCT 4 cut(s) 386, 391, 696, 729
Alw21I GWGCWC 1 cut(s) 479
Alw26I GTCTC 3 cut(s) 362, 421, 504
AlwNI CAGNNNCTG 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 759
Aor13HI TCCGGA 1 cut(s) 274
AoxI GGCC 4 cut(s) 249, 518, 700, 756
ApeKI GCWGC 4 cut(s) 92, 339, 573, 729
ApoI RAATTY 2 cut(s) 278, 608
ArsI GACNNNNNNTTYG 2 cut(s) 605, 637
Asp700I GAANNNNTTC 1 cut(s) 230
AspLEI GCGC 3 cut(s) 192, 406, 773
AspS9I GGNCC 3 cut(s) 452, 700, 757
AsuC2I CCSGG 2 cut(s) 760, 761
AsuHPI GGTGA 2 cut(s) 77, 736
AvaI CYCGRG 1 cut(s) 759
AvaII GGWCC 1 cut(s) 452
AxyI CCTNAGG 1 cut(s) 361
BalI TGGCCA 1 cut(s) 520
Bbv12I GWGCWC 1 cut(s) 479
BbvCI CCTCAGC 1 cut(s) 375
BbvI GCAGC 4 cut(s) 79, 351, 585, 716
BccI CCATC 1 cut(s) 355
BceAI ACGGC 1 cut(s) 352
BcnI CCSGG 2 cut(s) 760, 761
BcoDI GTCTC 3 cut(s) 362, 421, 504
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 3 cut(s) 165, 383, 570
BisI GCNGC 4 cut(s) 93, 340, 574, 730
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 4 cut(s) 94, 341, 575, 731
Bme1390I CCNGG 2 cut(s) 760, 761
Bme18I GGWCC 1 cut(s) 452
BmeT110I CYCGRG 1 cut(s) 759
BmgT120I GGNCC 3 cut(s) 452, 700, 757
BmiI GGNNCC 2 cut(s) 454, 598
BmrFI CCNGG 2 cut(s) 760, 761
BmsI GCATC 1 cut(s) 351
Bpu10I CCTNAGC 1 cut(s) 375
Bpu1102I GCTNAGC 1 cut(s) 387
BpuEI CTTGAG 2 cut(s) 206, 259
BpuMI CCSGG 2 cut(s) 760, 761
BsaI GGTCTC 2 cut(s) 362, 504
BsaJI CCNNGG 4 cut(s) 72, 127, 200, 759
BsaWI WCCGGW 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 709
Bse21I CCTNAGG 1 cut(s) 361
BseAI TCCGGA 1 cut(s) 274
BseDI CCNNGG 4 cut(s) 72, 127, 200, 759
BseGI GGATG 1 cut(s) 342
BseLI CCNNNNNNNGG 2 cut(s) 226, 709
BseMII CTCAG 3 cut(s) 375, 389, 401
BseRI GAGGAG 1 cut(s) 754
BseXI GCAGC 4 cut(s) 79, 351, 585, 716
BsgI GTGCAG 2 cut(s) 78, 552
Bsh1236I CGCG 2 cut(s) 721, 771
BshFI GGCC 4 cut(s) 251, 520, 702, 758
BsiHKAI GWGCWC 1 cut(s) 479
BsiHKCI CYCGRG 1 cut(s) 759
BsiSI CCGG 2 cut(s) 275, 760
BslI CCNNNNNNNGG 2 cut(s) 226, 709
BsmAI GTCTC 3 cut(s) 362, 421, 504
BsnI GGCC 4 cut(s) 251, 520, 702, 758
Bso31I GGTCTC 2 cut(s) 362, 504
BsoBI CYCGRG 1 cut(s) 759
Bsp1286I GDGCHC 1 cut(s) 479
Bsp13I TCCGGA 1 cut(s) 274
Bsp143I GATC 2 cut(s) 36, 661
Bsp1720I GCTNAGC 1 cut(s) 387
BspACI CCGC 5 cut(s) 600, 721, 736, 749, 769
BspANI GGCC 4 cut(s) 251, 520, 702, 758
BspCNI CTCAG 3 cut(s) 374, 388, 400
BspEI TCCGGA 1 cut(s) 274
BspFNI CGCG 2 cut(s) 721, 771
BspLI GGNNCC 2 cut(s) 454, 598
BspTNI GGTCTC 2 cut(s) 362, 504
BsrBI CCGCTC 1 cut(s) 602
BssECI CCNNGG 4 cut(s) 72, 127, 200, 759
BssMI GATC 2 cut(s) 36, 661
BssT1I CCWWGG 2 cut(s) 72, 127
Bst4CI ACNGT 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 83, 734
BstDEI CTNAG 3 cut(s) 361, 375, 387
BstENI CCTNNNNNAGG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 342
BstFNI CGCG 2 cut(s) 721, 771
BstHHI GCGC 3 cut(s) 192, 406, 773
BstKTI GATC 2 cut(s) 39, 664
BstMAI GTCTC 3 cut(s) 362, 421, 504
BstMBI GATC 2 cut(s) 36, 661
BstMWI GCNNNNNNNGC 4 cut(s) 189, 196, 755, 770
BstNSI RCATGY 2 cut(s) 85, 106
BstSCI CCNGG 2 cut(s) 758, 759
BstUI CGCG 2 cut(s) 721, 771
BstV1I GCAGC 4 cut(s) 79, 351, 585, 716
Bsu36I CCTNAGG 1 cut(s) 361
BsuRI GGCC 4 cut(s) 251, 520, 702, 758
BtsCI GGATG 1 cut(s) 342
Cac8I GCNNGC 2 cut(s) 83, 734
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 3 cut(s) 192, 406, 773
Cfr13I GGNCC 3 cut(s) 452, 700, 757
Cfr9I CCCGGG 1 cut(s) 759
CseI GACGC 1 cut(s) 670
Csp6I GTAC 1 cut(s) 443
CviAII CATG 4 cut(s) 82, 103, 263, 754
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 3 cut(s) 361, 375, 387
DpnI GATC 2 cut(s) 38, 663
DpnII GATC 2 cut(s) 36, 661
DrdI GACNNNNNNGTC 1 cut(s) 683
DseDI GACNNNNNNGTC 1 cut(s) 683
EaeI YGGCCR 1 cut(s) 518
EciI GGCGGA 1 cut(s) 764
Eco130I CCWWGG 2 cut(s) 72, 127
Eco31I GGTCTC 2 cut(s) 362, 504
Eco47I GGWCC 1 cut(s) 452
Eco81I CCTNAGG 1 cut(s) 361
Eco88I CYCGRG 1 cut(s) 759
EcoNI CCTNNNNNAGG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 452
EcoT14I CCWWGG 2 cut(s) 72, 127
ErhI CCWWGG 2 cut(s) 72, 127
FaeI CATG 4 cut(s) 85, 106, 266, 757
FaiI YATR 5 cut(s) 83, 104, 264, 284, 755
FatI CATG 4 cut(s) 81, 102, 262, 753
FauI CCCGC 2 cut(s) 714, 776
Fnu4HI GCNGC 4 cut(s) 93, 340, 574, 730
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 4 cut(s) 93, 340, 574, 730
FspBI CTAG 3 cut(s) 165, 383, 570
FspI TGCGCA 1 cut(s) 405
GlaI GCGC 3 cut(s) 191, 405, 772
GluI GCNGC 4 cut(s) 93, 340, 574, 730
HaeIII GGCC 4 cut(s) 251, 520, 702, 758
HapII CCGG 2 cut(s) 275, 760
HgaI GACGC 1 cut(s) 670
HhaI GCGC 3 cut(s) 192, 406, 773
Hin1II CATG 4 cut(s) 85, 106, 266, 757
Hin6I GCGC 3 cut(s) 190, 404, 771
HinP1I GCGC 3 cut(s) 190, 404, 771
HinfI GANTC 3 cut(s) 271, 536, 713
HpaII CCGG 2 cut(s) 275, 760
HphI GGTGA 2 cut(s) 77, 736
Hpy188I TCNGA 1 cut(s) 689
Hpy188III TCNNGA 7 cut(s) 10, 212, 223, 275, 363, 472, 605
Hpy99I CGWCG 3 cut(s) 686, 689, 721
HpyAV CCTTC 2 cut(s) 220, 576
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4V TGCA 7 cut(s) 23, 81, 85, 95, 102, 183, 533
HpyF10VI GCNNNNNNNGC 4 cut(s) 189, 196, 755, 770
HpyF3I CTNAG 3 cut(s) 361, 375, 387
Hsp92II CATG 4 cut(s) 85, 106, 266, 757
HspAI GCGC 3 cut(s) 190, 404, 771
Kpn2I TCCGGA 1 cut(s) 274
Kzo9I GATC 2 cut(s) 36, 661
LmnI GCTCC 2 cut(s) 46, 602
Lsp1109I GCAGC 4 cut(s) 79, 351, 585, 716
LweI GCATC 1 cut(s) 351
MaeI CTAG 3 cut(s) 165, 383, 570
MaeIII GTNAC 1 cut(s) 665
MalI GATC 2 cut(s) 38, 663
MbiI CCGCTC 1 cut(s) 602
MboI GATC 2 cut(s) 36, 661
MboII GAAGA 2 cut(s) 322, 510
MhlI GDGCHC 1 cut(s) 479
MlsI TGGCCA 1 cut(s) 520
MluCI AATT 4 cut(s) 256, 278, 554, 608
MluNI TGGCCA 1 cut(s) 520
MlyI GAGTC 2 cut(s) 530, 722
MmeI TCCRAC 5 cut(s) 119, 572, 632, 654, 667
MnlI CCTC 9 cut(s) 180, 195, 230, 234, 370, 384, 732, 780, 783
Mox20I TGGCCA 1 cut(s) 520
MroI TCCGGA 1 cut(s) 274
MroXI GAANNNNTTC 1 cut(s) 230
MscI TGGCCA 1 cut(s) 520
MseI TTAA 2 cut(s) 32, 411
MslI CAYNNNNRTG 2 cut(s) 86, 411
Msp20I TGGCCA 1 cut(s) 520
MspI CCGG 2 cut(s) 275, 760
MspR9I CCNGG 2 cut(s) 760, 761
MvnI CGCG 2 cut(s) 721, 771
MwoI GCNNNNNNNGC 4 cut(s) 189, 196, 755, 770
NciI CCSGG 2 cut(s) 760, 761
NdeII GATC 2 cut(s) 36, 661
NlaIII CATG 4 cut(s) 85, 106, 266, 757
NlaIV GGNNCC 2 cut(s) 454, 598
NmeAIII GCCGAG 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 665
NsbI TGCGCA 1 cut(s) 405
NspI RCATGY 2 cut(s) 85, 106
PaeI GCATGC 1 cut(s) 85
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 271
PflFI GACNNNGTC 1 cut(s) 680
PkrI GCNGC 4 cut(s) 94, 341, 575, 731
PleI GAGTC 2 cut(s) 530, 721
PpsI GAGTC 2 cut(s) 530, 721
PpuMI RGGWCCY 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 452
PspN4I GGNNCC 2 cut(s) 454, 598
PspPI GGNCC 3 cut(s) 452, 700, 757
PspPPI RGGWCCY 1 cut(s) 452
PstNI CAGNNNCTG 1 cut(s) 440
PsyI GACNNNGTC 1 cut(s) 680
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
RseI CAYNNNNRTG 2 cut(s) 86, 411
SaqAI TTAA 2 cut(s) 32, 411
SatI GCNGC 4 cut(s) 93, 340, 574, 730
Sau3AI GATC 2 cut(s) 36, 661
Sau96I GGNCC 3 cut(s) 452, 700, 757
SchI GAGTC 2 cut(s) 530, 722
ScrFI CCNGG 2 cut(s) 760, 761
SduI GDGCHC 1 cut(s) 479
SfaNI GCATC 1 cut(s) 351
SinI GGWCC 1 cut(s) 452
SmaI CCCGGG 1 cut(s) 761
SmiMI CAYNNNNRTG 2 cut(s) 86, 411
SmlI CTYRAG 3 cut(s) 8, 221, 238
SmoI CTYRAG 3 cut(s) 8, 221, 238
SpeI ACTAGT 1 cut(s) 164
SphI GCATGC 1 cut(s) 85
SrfI GCCCGGGC 1 cut(s) 761
Sse9I AATT 4 cut(s) 256, 278, 554, 608
SsiI CCGC 5 cut(s) 600, 721, 736, 749, 769
SspMI CTAG 3 cut(s) 165, 383, 570
StyD4I CCNGG 2 cut(s) 758, 759
StyI CCWWGG 2 cut(s) 72, 127
TaaI ACNGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 471
TasI AATT 4 cut(s) 256, 278, 554, 608
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 2 cut(s) 32, 411
Tru9I TTAA 2 cut(s) 32, 411
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 4 cut(s) 92, 339, 573, 729
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 3 cut(s) 251, 471, 597
TspMI CCCGGG 1 cut(s) 759
Tth111I GACNNNGTC 1 cut(s) 680
VpaK11BI GGWCC 1 cut(s) 452
XagI CCTNNNNNAGG 1 cut(s) 224
XapI RAATTY 2 cut(s) 278, 608
XceI RCATGY 2 cut(s) 85, 106
XmaI CCCGGG 1 cut(s) 759
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 3 cut(s) 165, 383, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.