Rmu_sc0001170.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001170.1
N/A
Physical Location & Seq
Reverse (-)
9934 .. 10799
866 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 513 bp
atgcttgactcaacaggctcggattaccacagttgggtaaccgatgttgagaatcatctcacttccaagggaatattacccataatccaggcacctaacccggatcttgtgttcaaccgaacatctacaaagcatgctcaagcagttatcttgatgcgacgccatatggacaaggcactcagattggagtatatgtcgatcaaggatgcaagagagctatgggtagcgctagaagagcgctttggaaatgtccaagattccctcctccctgacttgaagccattgtggtatcaaagcaataccgtactgaagtcaatgctggacggatcactagaaggaaaccgcaagtttggtgtggatacacgtggtggcaatgccacacgtgggagagggggtcgtggcaaccctatccgtggtaatggagccatagctcgtggtggtggcgccatgggtcgtggtggaggagaaaatcctcctagggaacgcccacaacgtgcacctcaattgaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

170

Amino Acids

18.76

Weight (kDa)

10.05

Isoelectric Point (pI)

29.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 91, 443
AciI CCGC 1 cut(s) 343
AclWI GGATC 2 cut(s) 111, 334
AcuI CTGAAG 1 cut(s) 329
AcvI CACGTG 2 cut(s) 365, 383
AcyI GRCGYC 2 cut(s) 160, 444
AdeI CACNNNGTG 2 cut(s) 368, 494
AfaI GTAC 1 cut(s) 306
AfeI AGCGCT 2 cut(s) 228, 239
AfiI CCNNNNNNNGG 3 cut(s) 34, 384, 413
AflIII ACRYGT 2 cut(s) 362, 380
AgsI TTSAA 3 cut(s) 115, 277, 508
AjnI CCWGG 1 cut(s) 87
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 2 cut(s) 217, 431
AluI AGCT 2 cut(s) 217, 431
Alw21I GWGCWC 1 cut(s) 499
Alw44I GTGCAC 1 cut(s) 495
AlwI GGATC 2 cut(s) 111, 334
Aor51HI AGCGCT 2 cut(s) 228, 239
ApaLI GTGCAC 1 cut(s) 495
AspA2I CCTAGG 1 cut(s) 476
AspLEI GCGC 3 cut(s) 229, 240, 446
AsuC2I CCSGG 1 cut(s) 101
AvrII CCTAGG 1 cut(s) 476
BaeGI GKGCMC 1 cut(s) 499
BanI GGYRCC 2 cut(s) 91, 443
BauI CACGAG 1 cut(s) 432
BbrPI CACGTG 2 cut(s) 365, 383
Bbv12I GWGCWC 1 cut(s) 499
BciT130I CCWGG 1 cut(s) 89
BciVI GTATCC 1 cut(s) 352
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 3 cut(s) 230, 332, 477
BfoI RGCGCY 3 cut(s) 230, 241, 447
BfuI GTATCC 1 cut(s) 352
BlnI CCTAGG 1 cut(s) 476
Bme1390I CCNGG 2 cut(s) 89, 101
BmiI GGNNCC 3 cut(s) 93, 424, 445
BmrFI CCNGG 2 cut(s) 89, 101
BmsI GCATC 2 cut(s) 144, 196
BpuEI CTTGAG 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 101
BsaAI YACGTR 2 cut(s) 365, 383
BsaHI GRCGYC 2 cut(s) 160, 444
BsaJI CCNNGG 4 cut(s) 66, 412, 447, 476
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 379, 409
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 384, 413
Bse3DI GCAATG 1 cut(s) 379
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 4 cut(s) 66, 412, 447, 476
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 3 cut(s) 34, 384, 413
BseMI GCAATG 1 cut(s) 379
BseMII CTCAG 1 cut(s) 193
BseRI GAGGAG 2 cut(s) 254, 477
BseSI GKGCMC 1 cut(s) 499
BshNI GGYRCC 2 cut(s) 91, 443
BsiHKAI GWGCWC 1 cut(s) 499
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 3 cut(s) 34, 384, 413
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 3 cut(s) 103, 198, 326
Bsp19I CCATGG 1 cut(s) 447
BspACI CCGC 1 cut(s) 343
BspCNI CTCAG 1 cut(s) 192
BspLI GGNNCC 3 cut(s) 93, 424, 445
BspPI GGATC 2 cut(s) 111, 334
BspQI GCTCTTC 1 cut(s) 228
BspT107I GGYRCC 2 cut(s) 91, 443
BsrDI GCAATG 1 cut(s) 379
BssECI CCNNGG 4 cut(s) 66, 412, 447, 476
BssMI GATC 3 cut(s) 103, 198, 326
BssNI GRCGYC 2 cut(s) 160, 444
BssSI CACGAG 1 cut(s) 432
BssT1I CCWWGG 3 cut(s) 66, 447, 476
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 32, 304
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 2 cut(s) 160, 444
BstBAI YACGTR 2 cut(s) 365, 383
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 179
BstDSI CCRYGG 2 cut(s) 412, 447
BstEII GGTNACC 1 cut(s) 37
BstF5I GGATG 1 cut(s) 211
BstH2I RGCGCY 3 cut(s) 230, 241, 447
BstHHI GCGC 3 cut(s) 229, 240, 446
BstKTI GATC 3 cut(s) 106, 201, 329
BstMBI GATC 3 cut(s) 103, 198, 326
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 87, 99
BstSLI GKGCMC 1 cut(s) 499
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuI GTATCC 1 cut(s) 352
BtgI CCRYGG 2 cut(s) 412, 447
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 3 cut(s) 229, 240, 446
CseI GACGC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 305
CviAII CATG 2 cut(s) 134, 448
CviJI RGCY 5 cut(s) 18, 217, 280, 425, 431
CviKI_1 RGCY 5 cut(s) 18, 217, 280, 425, 431
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 1 cut(s) 179
DinI GGCGCC 1 cut(s) 445
DpnI GATC 3 cut(s) 105, 200, 328
DpnII GATC 3 cut(s) 103, 198, 326
DraIII CACNNNGTG 2 cut(s) 368, 494
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 3 cut(s) 66, 447, 476
Eco47III AGCGCT 2 cut(s) 228, 239
Eco57I CTGAAG 1 cut(s) 329
Eco72I CACGTG 2 cut(s) 365, 383
Eco91I GGTNACC 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 3 cut(s) 66, 447, 476
EgeI GGCGCC 1 cut(s) 445
EheI GGCGCC 1 cut(s) 445
ErhI CCWWGG 3 cut(s) 66, 447, 476
FaeI CATG 2 cut(s) 137, 451
FaiI YATR 9 cut(s) 83, 135, 165, 167, 192, 194, 220, 428, 449
FatI CATG 2 cut(s) 133, 447
FauNDI CATATG 1 cut(s) 165
FokI GGATG 1 cut(s) 218
FspBI CTAG 3 cut(s) 230, 332, 477
GlaI GCGC 3 cut(s) 228, 239, 445
HaeII RGCGCY 3 cut(s) 230, 241, 447
HapII CCGG 1 cut(s) 101
HgaI GACGC 1 cut(s) 168
HhaI GCGC 3 cut(s) 229, 240, 446
Hin1I GRCGYC 2 cut(s) 160, 444
Hin1II CATG 2 cut(s) 137, 451
Hin6I GCGC 3 cut(s) 227, 238, 444
HinP1I GCGC 3 cut(s) 227, 238, 444
HinfI GANTC 3 cut(s) 8, 52, 257
HpaII CCGG 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 497
Hpy188I TCNGA 2 cut(s) 22, 182
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 1 cut(s) 497
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 2 cut(s) 32, 304
HpyCH4IV ACGT 3 cut(s) 364, 382, 493
HpyCH4V TGCA 2 cut(s) 209, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 1 cut(s) 179
HpySE526I ACGT 3 cut(s) 364, 382, 493
Hsp92I GRCGYC 2 cut(s) 160, 444
Hsp92II CATG 2 cut(s) 137, 451
HspAI GCGC 3 cut(s) 227, 238, 444
KasI GGCGCC 1 cut(s) 443
Kzo9I GATC 3 cut(s) 103, 198, 326
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 422
LpnPI CCDG 5 cut(s) 74, 101, 114, 282, 305
LweI GCATC 2 cut(s) 144, 196
MaeI CTAG 3 cut(s) 230, 332, 477
MaeII ACGT 3 cut(s) 364, 382, 493
MaeIII GTNAC 1 cut(s) 37
MalI GATC 3 cut(s) 105, 200, 328
MboI GATC 3 cut(s) 103, 198, 326
MboII GAAGA 1 cut(s) 245
MfeI CAATTG 1 cut(s) 503
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 1 cut(s) 503
Mly113I GGCGCC 1 cut(s) 444
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 6 cut(s) 272, 275, 383, 455, 483, 510
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 89, 101
MunI CAATTG 1 cut(s) 503
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 235
NarI GGCGCC 1 cut(s) 444
NciI CCSGG 1 cut(s) 101
NcoI CCATGG 1 cut(s) 447
NdeI CATATG 1 cut(s) 165
NdeII GATC 3 cut(s) 103, 198, 326
NlaIII CATG 2 cut(s) 137, 451
NlaIV GGNNCC 3 cut(s) 93, 424, 445
NspI RCATGY 1 cut(s) 137
PaeI GCATGC 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 490
PfeI GAWTC 2 cut(s) 52, 257
PleI GAGTC 1 cut(s) 2
PluTI GGCGCC 1 cut(s) 447
PmaCI CACGTG 2 cut(s) 365, 383
PmlI CACGTG 2 cut(s) 365, 383
PpsI GAGTC 1 cut(s) 2
Ppu21I YACGTR 2 cut(s) 365, 383
Psp6I CCWGG 1 cut(s) 87
PspCI CACGTG 2 cut(s) 365, 383
PspEI GGTNACC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 3 cut(s) 93, 424, 445
PsuI RGATCY 1 cut(s) 103
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SapI GCTCTTC 1 cut(s) 228
Sau3AI GATC 3 cut(s) 103, 198, 326
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 2 cut(s) 89, 101
SduI GDGCHC 1 cut(s) 499
SetI ASST 7 cut(s) 97, 219, 367, 385, 433, 496, 502
SfaNI GCATC 2 cut(s) 144, 196
SfoI GGCGCC 1 cut(s) 445
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
SphI GCATGC 1 cut(s) 137
Sse9I AATT 1 cut(s) 503
SsiI CCGC 1 cut(s) 343
SspDI GGCGCC 1 cut(s) 443
SspI AATATT 1 cut(s) 75
SspMI CTAG 3 cut(s) 230, 332, 477
StyD4I CCNGG 2 cut(s) 87, 99
StyI CCWWGG 3 cut(s) 66, 447, 476
TaaI ACNGT 2 cut(s) 32, 304
TaiI ACGT 3 cut(s) 367, 385, 496
TaqI TCGA 1 cut(s) 197
TasI AATT 1 cut(s) 503
TfiI GAWTC 2 cut(s) 52, 257
TspGWI ACGGA 2 cut(s) 339, 401
VneI GTGCAC 1 cut(s) 495
XceI RCATGY 1 cut(s) 137
XmaJI CCTAGG 1 cut(s) 476
XspI CTAG 3 cut(s) 230, 332, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.