Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001171.1

Orthogroup ID

OG0031118

Physical Location & Seq

Genomic Coordinates Forward (+)

20072 .. 20668

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgtatttagatgaccttggaagggacaatattccgtttaacttaacattgatggtttttggttatcagtatgggattgcctatgtgtattcgacagatgctagaaggtgtttactgcagaaacctggtgctattgtgggatgtggttctggctttgaggaggctgttgaataccttagaaaaaagtcatttacgaggcggaccacaagggaagagcttgtgaactacctcagaaaggggatcgctgttgcggctattgtgggcagatatactggttgttttgtaacttcagtagttataccaaataaacggaagctaccagagattcatcaaggtaatcacgtgcttcagatttgtcattcaaatttgtttagcctacaaaggaagttgtccatgtgttttattgtgacaagtattgggttgcaatatacatttgagaatgaaacagtagcgaatgttgtggctagaagggagacaacatttggaaacaagtggaacgaaaattcattgacggcttcaatggcaattctacaaatattgcaagatcggatgaaagttgtaagtcttgatggcaaatatttctctttccatacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019899 GO:0030628 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031325 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031503 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032991 GO:0033036 GO:0033119 GO:0033120 GO:0034613 GO:0034641 GO:0036002 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045934 GO:0045935 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050657 GO:0050658 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0071004 GO:0071010 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312 GO:1903320 GO:1903321 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lsm_interact RRM_1

Protein Analysis

198

Amino Acids

22.53

Weight (kDa)

9.34

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031118)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001171.1_g000005
rosa_samantha	Rh2BG346000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	199, 251
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	2 cut(s)	364, 502
AcuI	CTGAAG	2 cut(s)	273, 332
AcvI	CACGTG	1 cut(s)	343
AfiI	CCNNNNNNNGG	2 cut(s)	22, 235
AgsI	TTSAA	3 cut(s)	170, 363, 519
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	2 cut(s)	217, 316
AluI	AGCT	2 cut(s)	217, 316
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	1 cut(s)	248
ApoI	RAATTY	2 cut(s)	364, 502
AspS9I	GGNCC	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	201
BbrPI	CACGTG	1 cut(s)	343
BccI	CCATC	2 cut(s)	46, 563
BceAI	ACGGC	1 cut(s)	528
BciT130I	CCWGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	2 cut(s)	102, 465
BfmI	CTRYAG	1 cut(s)	116
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 235
Bse1I	ACTGG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	2 cut(s)	146, 555
BseLI	CCNNNNNNNGG	2 cut(s)	22, 235
BseMII	CTCAG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	2 cut(s)	22, 235
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	240, 544
BspACI	CCGC	2 cut(s)	199, 251
BspCNI	CTCAG	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	120
BspPI	GGATC	1 cut(s)	248
BspQI	GCTCTTC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	2 cut(s)	240, 544
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	343
BstDEI	CTNAG	2 cut(s)	176, 230
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstF5I	GGATG	2 cut(s)	146, 555
BstKTI	GATC	2 cut(s)	243, 547
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	2 cut(s)	240, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 521
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstSFI	CTRYAG	1 cut(s)	116
BtsCI	GGATG	2 cut(s)	146, 555
Cfr13I	GGNCC	1 cut(s)	201
CsiI	ACCWGGT	1 cut(s)	124
CviAII	CATG	2 cut(s)	394, 594
CviJI	RGCY	8 cut(s)	153, 164, 217, 254, 316, 375, 464, 515
CviKI_1	RGCY	8 cut(s)	153, 164, 217, 254, 316, 375, 464, 515
DdeI	CTNAG	2 cut(s)	176, 230
DpnI	GATC	2 cut(s)	242, 546
DpnII	GATC	2 cut(s)	240, 544
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	201
Eco57I	CTGAAG	2 cut(s)	273, 332
Eco72I	CACGTG	1 cut(s)	343
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	2 cut(s)	397, 597
FaiI	YATR	8 cut(s)	72, 84, 270, 299, 395, 429, 591, 595
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	2 cut(s)	393, 593
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	2 cut(s)	153, 562
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	2 cut(s)	102, 465
GluI	GCNGC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	397, 597
HinfI	GANTC	1 cut(s)	325
Hpy166II	GTNNAC	2 cut(s)	113, 223
Hpy188I	TCNGA	3 cut(s)	233, 351, 549
Hpy188III	TCNNGA	1 cut(s)	566
Hpy8I	GTNNAC	2 cut(s)	113, 223
HpyAV	CCTTC	3 cut(s)	15, 99, 462
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	3 cut(s)	118, 424, 541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 521
HpyF3I	CTNAG	2 cut(s)	176, 230
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	397, 597
Kzo9I	GATC	2 cut(s)	240, 544
LguI	GCTCTTC	1 cut(s)	207
LpnPI	CCDG	5 cut(s)	111, 135, 138, 258, 333
LweI	GCATC	1 cut(s)	88
MabI	ACCWGGT	1 cut(s)	124
MaeI	CTAG	2 cut(s)	102, 465
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	2 cut(s)	283, 406
MalI	GATC	2 cut(s)	242, 546
MboI	GATC	2 cut(s)	240, 544
MboII	GAAGA	1 cut(s)	224
MluCI	AATT	3 cut(s)	364, 502, 525
MnlI	CCTC	4 cut(s)	151, 154, 189, 239
MseI	TTAA	2 cut(s)	39, 44
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	251, 521
NdeII	GATC	2 cut(s)	240, 544
NlaIII	CATG	2 cut(s)	397, 597
NmuCI	GTSAC	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	253
PmaCI	CACGTG	1 cut(s)	343
PmlI	CACGTG	1 cut(s)	343
Ppu21I	YACGTR	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	124
PspCI	CACGTG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	39, 44
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	2 cut(s)	240, 544
Sau96I	GGNCC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	9 cut(s)	18, 110, 127, 177, 219, 231, 318, 337, 345
SexAI	ACCWGGT	1 cut(s)	124
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	116
SinI	GGWCC	1 cut(s)	201
Sse9I	AATT	3 cut(s)	364, 502, 525
SsiI	CCGC	2 cut(s)	199, 251
SspI	AATATT	3 cut(s)	31, 537, 578
SspMI	CTAG	2 cut(s)	102, 465
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	1 cut(s)	92
TasI	AATT	3 cut(s)	364, 502, 525
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	2 cut(s)	39, 44
Tru9I	TTAA	2 cut(s)	39, 44
TseFI	GTSAC	1 cut(s)	406
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	4 cut(s)	317, 456, 495, 566
TspGWI	ACGGA	2 cut(s)	24, 325
VpaK11BI	GGWCC	1 cut(s)	201
XagI	CCTNNNNNAGG	1 cut(s)	233
XapI	RAATTY	2 cut(s)	364, 502
XspI	CTAG	2 cut(s)	102, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.