Rmu_sc0001171.1_g000027

Bifunctional riboflavin kinase FMN phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001171.1
N/A
Physical Location & Seq
Reverse (-)
131502 .. 132863
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
atgagctgctgcgactgtgcatccaatcactgcaatacagagaccccaaaacccaagattttggccgtcattcttgatttggatgggacccttttggacacagagcgggctacaaagagcgtcttcaaggagtttttggccaagtatggcaagacattgaataaggaaagggaagagaagagggagattgggaagacactcaaagactcgtctaccgctactgttgaggactatgatcttccattgactcctgaccagtttattgaagaaatcatccccatgtatcaacaaaagtggaagcacgcgaaagctcttcctggtgctacccgtcttatcaaacatctccatgaccatggagtacctactgctctagcttcaaattccttgcgcgaatatataaatgcaaagatctctgtccatcaaggttggcagggatggttttcagtaatccttggcagtgaccaggttaaagcgggcaagccctctccagatttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00740 ko01100 ko01110 map00740 map01100 map01110
Pfam Domains
Protein Families
HAD_2

Protein Analysis

165

Amino Acids

18.46

Weight (kDa)

7.0

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase PF00702 22 - 164 1.6e-15 haloacid dehalogenase-like hydrolase
HAD_2 PF13419 23 - 164 9.8e-19 Haloacid dehalogenase-like hydrolase
HAD PF12710 23 - 153 5.6e-09 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 106
AccI GTMKAC 1 cut(s) 212
AccII CGCG 2 cut(s) 305, 390
AciI CCGC 3 cut(s) 106, 216, 473
AcoI YGGCCR 2 cut(s) 63, 138
AcsI RAATTY 1 cut(s) 379
AfaI GTAC 1 cut(s) 360
AgsI TTSAA 4 cut(s) 127, 160, 266, 378
AjnI CCWGG 2 cut(s) 316, 462
AluBI AGCT 3 cut(s) 6, 311, 374
AluI AGCT 3 cut(s) 6, 311, 374
Alw26I GTCTC 1 cut(s) 35
AoxI GGCC 2 cut(s) 63, 138
ApeKI GCWGC 2 cut(s) 6, 9
ApoI RAATTY 1 cut(s) 379
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 87
AvaII GGWCC 1 cut(s) 87
BalI TGGCCA 1 cut(s) 140
BbsI GAAGAC 2 cut(s) 115, 200
BccI CCATC 3 cut(s) 77, 426, 429
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 2 cut(s) 318, 464
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 1 cut(s) 371
BglII AGATCT 1 cut(s) 408
BisI GCNGC 2 cut(s) 7, 10
BlsI GCNGC 2 cut(s) 8, 11
Bme1390I CCNGG 2 cut(s) 318, 464
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 2 cut(s) 88, 89
BmrFI CCNGG 2 cut(s) 318, 464
BmsI GCATC 1 cut(s) 29
BpiI GAAGAC 2 cut(s) 115, 200
BpmI CTGGAG 1 cut(s) 471
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 352, 451
Bse1I ACTGG 1 cut(s) 256
BseBI CCWGG 2 cut(s) 318, 464
BseDI CCNNGG 2 cut(s) 352, 451
BseGI GGATG 4 cut(s) 20, 88, 273, 440
BseNI ACTGG 1 cut(s) 256
Bsh1236I CGCG 2 cut(s) 305, 390
BshFI GGCC 2 cut(s) 65, 140
BslFI GGGAC 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 2 cut(s) 65, 140
Bso31I GGTCTC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 235, 408
Bsp19I CCATGG 1 cut(s) 352
BspACI CCGC 3 cut(s) 106, 216, 473
BspANI GGCC 2 cut(s) 65, 140
BspFNI CGCG 2 cut(s) 305, 390
BspLI GGNNCC 2 cut(s) 88, 89
BspQI GCTCTTC 1 cut(s) 318
BspTNI GGTCTC 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 106
BsrI ACTGG 1 cut(s) 256
BssECI CCNNGG 2 cut(s) 352, 451
BssMI GATC 2 cut(s) 235, 408
BssT1I CCWWGG 2 cut(s) 352, 451
Bst2UI CCWGG 2 cut(s) 318, 464
Bst4CI ACNGT 2 cut(s) 17, 223
Bst6I CTCTTC 3 cut(s) 168, 173, 318
BstC8I GCNNGC 4 cut(s) 108, 303, 475, 479
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 4 cut(s) 20, 88, 273, 440
BstFNI CGCG 2 cut(s) 305, 390
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 2 cut(s) 238, 411
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 2 cut(s) 235, 408
BstNI CCWGG 2 cut(s) 318, 464
BstSCI CCNGG 2 cut(s) 316, 462
BstUI CGCG 2 cut(s) 305, 390
BstV2I GAAGAC 2 cut(s) 115, 200
BstX2I RGATCY 1 cut(s) 408
BstXI CCANNNNNNTGG 2 cut(s) 61, 353
BstYI RGATCY 1 cut(s) 408
BsuRI GGCC 2 cut(s) 65, 140
BtgI CCRYGG 1 cut(s) 352
BtsCI GGATG 4 cut(s) 20, 88, 273, 440
BtsI GCAGTG 2 cut(s) 28, 463
BtsIMutI CAGTG 2 cut(s) 28, 463
Cac8I GCNNGC 4 cut(s) 108, 303, 475, 479
CfoI GCGC 1 cut(s) 390
Cfr13I GGNCC 1 cut(s) 87
CseI GACGC 1 cut(s) 109
CsiI ACCWGGT 1 cut(s) 462
Csp6I GTAC 1 cut(s) 359
CspCI CAANNNNNGTGG 2 cut(s) 275, 310
CviAII CATG 3 cut(s) 280, 347, 353
CviJI RGCY 7 cut(s) 6, 65, 110, 140, 311, 374, 481
CviKI_1 RGCY 7 cut(s) 6, 65, 110, 140, 311, 374, 481
CviQI GTAC 1 cut(s) 359
DpnI GATC 2 cut(s) 237, 410
DpnII GATC 2 cut(s) 235, 408
EaeI YGGCCR 2 cut(s) 63, 138
Eam1104I CTCTTC 3 cut(s) 168, 173, 318
EarI CTCTTC 3 cut(s) 168, 173, 318
Eco130I CCWWGG 2 cut(s) 352, 451
Eco31I GGTCTC 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 87
EcoRII CCWGG 2 cut(s) 316, 462
EcoT14I CCWWGG 2 cut(s) 352, 451
ErhI CCWWGG 2 cut(s) 352, 451
FaeI CATG 3 cut(s) 283, 350, 356
FaiI YATR 7 cut(s) 147, 234, 281, 348, 354, 396, 398
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FaqI GGGAC 1 cut(s) 100
FatI CATG 3 cut(s) 279, 346, 352
FauI CCCGC 2 cut(s) 99, 466
FblI GTMKAC 1 cut(s) 212
Fnu4HI GCNGC 2 cut(s) 7, 10
FokI GGATG 4 cut(s) 7, 95, 260, 447
Fsp4HI GCNGC 2 cut(s) 7, 10
FspBI CTAG 1 cut(s) 371
GlaI GCGC 1 cut(s) 389
GluI GCNGC 2 cut(s) 7, 10
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 2 cut(s) 65, 140
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 390
Hin1II CATG 3 cut(s) 283, 350, 356
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HinfI GANTC 2 cut(s) 206, 247
Hpy166II GTNNAC 1 cut(s) 213
Hpy188III TCNNGA 3 cut(s) 74, 251, 488
Hpy8I GTNNAC 1 cut(s) 213
HpyCH4III ACNGT 2 cut(s) 17, 223
HpyCH4V TGCA 3 cut(s) 20, 33, 404
Hsp92II CATG 3 cut(s) 283, 350, 356
HspAI GCGC 1 cut(s) 388
KflI GGGWCCC 1 cut(s) 87
Kzo9I GATC 2 cut(s) 235, 408
LguI GCTCTTC 1 cut(s) 318
LpnPI CCDG 7 cut(s) 264, 269, 303, 330, 416, 449, 476
LweI GCATC 1 cut(s) 29
MabI ACCWGGT 1 cut(s) 462
MaeI CTAG 1 cut(s) 371
MaeIII GTNAC 1 cut(s) 458
MalI GATC 2 cut(s) 237, 410
MbiI CCGCTC 1 cut(s) 106
MboI GATC 2 cut(s) 235, 408
MboII GAAGA 7 cut(s) 115, 185, 190, 205, 230, 278, 305
MflI RGATCY 1 cut(s) 408
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 1 cut(s) 379
MluNI TGGCCA 1 cut(s) 140
MlyI GAGTC 2 cut(s) 200, 241
MnlI CCTC 3 cut(s) 174, 220, 493
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 3 cut(s) 278, 345, 351
Msp20I TGGCCA 1 cut(s) 140
MspR9I CCNGG 2 cut(s) 318, 464
MvaI CCWGG 2 cut(s) 318, 464
MvnI CGCG 2 cut(s) 305, 390
NcoI CCATGG 1 cut(s) 352
NdeII GATC 2 cut(s) 235, 408
NlaIII CATG 3 cut(s) 283, 350, 356
NlaIV GGNNCC 2 cut(s) 88, 89
NmuCI GTSAC 1 cut(s) 458
PciSI GCTCTTC 1 cut(s) 318
PkrI GCNGC 2 cut(s) 8, 11
PleI GAGTC 2 cut(s) 200, 241
PpsI GAGTC 2 cut(s) 200, 241
PpuMI RGGWCCY 1 cut(s) 87
Psp5II RGGWCCY 1 cut(s) 87
Psp6I CCWGG 2 cut(s) 316, 462
PspGI CCWGG 2 cut(s) 316, 462
PspN4I GGNNCC 2 cut(s) 88, 89
PspPI GGNCC 1 cut(s) 87
PspPPI RGGWCCY 1 cut(s) 87
PsuI RGATCY 1 cut(s) 408
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
RseI CAYNNNNRTG 3 cut(s) 278, 345, 351
SapI GCTCTTC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 2 cut(s) 7, 10
Sau3AI GATC 2 cut(s) 235, 408
Sau96I GGNCC 1 cut(s) 87
SchI GAGTC 2 cut(s) 200, 241
ScrFI CCNGG 2 cut(s) 318, 464
SetI ASST 6 cut(s) 8, 313, 364, 376, 427, 468
SexAI ACCWGGT 1 cut(s) 462
SfaNI GCATC 1 cut(s) 29
SinI GGWCC 1 cut(s) 87
SmiMI CAYNNNNRTG 3 cut(s) 278, 345, 351
Sse9I AATT 1 cut(s) 379
SsiI CCGC 3 cut(s) 106, 216, 473
SspMI CTAG 1 cut(s) 371
StyD4I CCNGG 2 cut(s) 316, 462
StyI CCWWGG 2 cut(s) 352, 451
TaaI ACNGT 2 cut(s) 17, 223
TasI AATT 1 cut(s) 379
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 2 cut(s) 35, 463
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 2 cut(s) 6, 9
Tsp45I GTSAC 1 cut(s) 458
TspRI CASTG 2 cut(s) 35, 463
VpaK11BI GGWCC 1 cut(s) 87
XapI RAATTY 1 cut(s) 379
XmiI GTMKAC 1 cut(s) 212
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.