Rmu_sc0001181.1_g000006

Protein translation factor SUI1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001181.1
N/A
Physical Location & Seq
Forward (+)
32496 .. 36802
4307 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 735 bp
atggcctgcattgaaatggaggttggtcaagaattaactttgactctggcaattgactgtaacgaggctgcgccagctcagccctatctcggtcaccgtcgtccggccaatctccgaatccctctaaatcatctcatcaggtctgagcgttgtggttgtccgggcctattagttcattaccaagtttcatgtctgagctcgacgtccagattcctacagcctttgatccgtttgctgaggcaaacgctggtactttcctttatgccgaaacaatatccgtttgctgaggcaaacgctgaggactcgggtgctggaacaaaggagtatgtgcacattcgtatacagcaacgaaatggtaggaaaagcctgacaacagtgcagggactgaagaaggaatttagctacaacaagattctcaaagaccttaagaaggaattttgctgcaatggtacagttgtccaggacccagaacaaggccaggtgattcaacttcaagtaatggcctgcattgaaatggaggttggtcaagaattaactttgactctggcaattgactgtaacgaggctgcgccaggtgggccaggcccaagcccaactaacagcccattacgtcactccctccatccacccaatcctccttgttctggaacactccgactcacacgctcaatcaccgacacagcacctccacgctccattcccatctcttctagaccagcgcgtggactatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

244

Amino Acids

26.81

Weight (kDa)

8.7

Isoelectric Point (pI)

62.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 107 - 165 1e-18 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 206
AccB7I CCANNNNNTGG 1 cut(s) 722
AccI GTMKAC 1 cut(s) 340
AccII CGCG 1 cut(s) 721
AclWI GGATC 1 cut(s) 220
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 2 cut(s) 395, 434
AcuI CTGAAG 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 203
AfaI GTAC 2 cut(s) 252, 451
AfiI CCNNNNNNNGG 6 cut(s) 89, 103, 430, 473, 644, 722
AflII CTTAAG 1 cut(s) 425
AgsI TTSAA 4 cut(s) 14, 488, 494, 512
AjnI CCWGG 4 cut(s) 459, 477, 571, 580
AjuI GAANNNNNNNTTGG 3 cut(s) 38, 504, 536
AluBI AGCT 3 cut(s) 77, 198, 402
AluI AGCT 3 cut(s) 77, 198, 402
Alw21I GWGCWC 2 cut(s) 200, 333
Alw44I GTGCAC 1 cut(s) 329
AlwI GGATC 1 cut(s) 220
AlwNI CAGNNNCTG 1 cut(s) 385
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 7 cut(s) 3, 105, 163, 475, 501, 578, 583
ApaLI GTGCAC 1 cut(s) 329
ApeKI GCWGC 3 cut(s) 68, 441, 566
ApoI RAATTY 2 cut(s) 395, 434
AspLEI GCGC 3 cut(s) 73, 571, 721
AspS9I GGNCC 4 cut(s) 163, 463, 578, 584
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 3 cut(s) 86, 493, 664
AvaI CYCGRG 1 cut(s) 304
AvaII GGWCC 1 cut(s) 463
BaeGI GKGCMC 1 cut(s) 333
BaeI ACNNNNGTAYC 2 cut(s) 441, 474
BanII GRGCYC 1 cut(s) 200
Bbv12I GWGCWC 2 cut(s) 200, 333
BbvCI CCTCAGC 3 cut(s) 236, 285, 297
BbvI GCAGC 3 cut(s) 55, 428, 553
BccI CCATC 2 cut(s) 630, 710
BciT130I CCWGG 4 cut(s) 461, 479, 573, 582
BcnI CCSGG 1 cut(s) 162
BfaI CTAG 1 cut(s) 711
BfmI CTRYAG 1 cut(s) 215
BfrI CTTAAG 1 cut(s) 425
BglI GCCNNNNNGGC 1 cut(s) 577
BisI GCNGC 3 cut(s) 69, 442, 567
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 3 cut(s) 70, 443, 568
Bme1390I CCNGG 5 cut(s) 162, 461, 479, 573, 582
Bme18I GGWCC 1 cut(s) 463
BmeT110I CYCGRG 1 cut(s) 304
BmgT120I GGNCC 4 cut(s) 163, 463, 578, 584
BmiI GGNNCC 1 cut(s) 465
BmrFI CCNGG 5 cut(s) 162, 461, 479, 573, 582
Bpu10I CCTNAGC 3 cut(s) 236, 285, 297
Bpu1102I GCTNAGC 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 670, 700
Bsc4I CCNNNNNNNGG 6 cut(s) 89, 103, 430, 473, 644, 722
Bse3DI GCAATG 1 cut(s) 451
BseBI CCWGG 4 cut(s) 461, 479, 573, 582
BseGI GGATG 1 cut(s) 622
BseLI CCNNNNNNNGG 6 cut(s) 89, 103, 430, 473, 644, 722
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 6 cut(s) 92, 135, 185, 227, 276, 288
BseSI GKGCMC 1 cut(s) 333
BseXI GCAGC 3 cut(s) 55, 428, 553
BsgI GTGCAG 1 cut(s) 398
Bsh1236I CGCG 1 cut(s) 721
BshFI GGCC 7 cut(s) 5, 107, 165, 477, 503, 580, 585
BsiHKAI GWGCWC 2 cut(s) 200, 333
BsiHKCI CYCGRG 1 cut(s) 304
BsiSI CCGG 2 cut(s) 104, 161
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 6 cut(s) 89, 103, 430, 473, 644, 722
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 7 cut(s) 5, 107, 165, 477, 503, 580, 585
BsoBI CYCGRG 1 cut(s) 304
Bsp1286I GDGCHC 2 cut(s) 200, 333
Bsp143I GATC 1 cut(s) 225
Bsp1720I GCTNAGC 1 cut(s) 78
BspANI GGCC 7 cut(s) 5, 107, 165, 477, 503, 580, 585
BspCNI CTCAG 6 cut(s) 91, 136, 186, 228, 277, 289
BspFNI CGCG 1 cut(s) 721
BspHI TCATGA 1 cut(s) 731
BspLI GGNNCC 1 cut(s) 465
BspPI GGATC 1 cut(s) 220
BspTI CTTAAG 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 451
BssMI GATC 1 cut(s) 225
BssNAI GTATAC 1 cut(s) 341
BssNI GRCGYC 1 cut(s) 203
Bst1107I GTATAC 1 cut(s) 341
Bst2UI CCWGG 4 cut(s) 461, 479, 573, 582
Bst4CI ACNGT 5 cut(s) 59, 98, 376, 454, 557
Bst6I CTCTTC 1 cut(s) 712
BstACI GRCGYC 1 cut(s) 203
BstAFI CTTAAG 1 cut(s) 425
BstC8I GCNNGC 3 cut(s) 7, 75, 505
BstDEI CTNAG 6 cut(s) 78, 144, 194, 236, 285, 297
BstEII GGTNACC 1 cut(s) 92
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 1 cut(s) 622
BstFNI CGCG 1 cut(s) 721
BstHHI GCGC 3 cut(s) 73, 571, 721
BstKTI GATC 1 cut(s) 228
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 3 cut(s) 74, 79, 577
BstNI CCWGG 4 cut(s) 461, 479, 573, 582
BstPI GGTNACC 1 cut(s) 92
BstSCI CCNGG 5 cut(s) 160, 459, 477, 571, 580
BstSFI CTRYAG 1 cut(s) 215
BstSLI GKGCMC 1 cut(s) 333
BstUI CGCG 1 cut(s) 721
BstV1I GCAGC 3 cut(s) 55, 428, 553
BstZ17I GTATAC 1 cut(s) 341
BsuRI GGCC 7 cut(s) 5, 107, 165, 477, 503, 580, 585
BtsCI GGATG 1 cut(s) 622
BtsIMutI CAGTG 1 cut(s) 381
Cac8I GCNNGC 3 cut(s) 7, 75, 505
CaiI CAGNNNCTG 1 cut(s) 385
CciI TCATGA 1 cut(s) 731
CfoI GCGC 3 cut(s) 73, 571, 721
Cfr13I GGNCC 4 cut(s) 163, 463, 578, 584
Csp6I GTAC 2 cut(s) 251, 450
CviAII CATG 2 cut(s) 189, 732
CviQI GTAC 2 cut(s) 251, 450
DdeI CTNAG 6 cut(s) 78, 144, 194, 236, 285, 297
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 712
EarI CTCTTC 1 cut(s) 712
Ecl136II GAGCTC 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 463
Eco53kI GAGCTC 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 304
Eco91I GGTNACC 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 198
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoO109I RGGNCCY 1 cut(s) 463
EcoO65I GGTNACC 1 cut(s) 92
EcoRII CCWGG 4 cut(s) 459, 477, 571, 580
EcoT38I GRGCYC 1 cut(s) 200
FaeI CATG 2 cut(s) 192, 735
FaiI YATR 5 cut(s) 190, 263, 327, 341, 733
FaqI GGGAC 1 cut(s) 396
FatI CATG 2 cut(s) 188, 731
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 69, 442, 567
FokI GGATG 1 cut(s) 609
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 3 cut(s) 69, 442, 567
FspBI CTAG 1 cut(s) 711
GlaI GCGC 3 cut(s) 72, 570, 720
GluI GCNGC 3 cut(s) 69, 442, 567
HaeIII GGCC 7 cut(s) 5, 107, 165, 477, 503, 580, 585
HapII CCGG 2 cut(s) 104, 161
HhaI GCGC 3 cut(s) 73, 571, 721
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 2 cut(s) 192, 735
Hin6I GCGC 3 cut(s) 71, 569, 719
HinP1I GCGC 3 cut(s) 71, 569, 719
HinfI GANTC 8 cut(s) 43, 117, 210, 302, 412, 484, 541, 657
HpaII CCGG 2 cut(s) 104, 161
HphI GGTGA 3 cut(s) 86, 493, 664
Hpy166II GTNNAC 3 cut(s) 331, 341, 725
Hpy188I TCNGA 4 cut(s) 116, 145, 195, 656
Hpy188III TCNNGA 6 cut(s) 29, 207, 527, 645, 711, 732
Hpy8I GTNNAC 3 cut(s) 331, 341, 725
Hpy99I CGWCG 2 cut(s) 102, 205
HpyAV CCTTC 2 cut(s) 385, 424
HpyCH4III ACNGT 5 cut(s) 59, 98, 376, 454, 557
HpyCH4IV ACGT 2 cut(s) 203, 610
HpyCH4V TGCA 5 cut(s) 9, 331, 379, 444, 507
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 79, 577
HpyF3I CTNAG 6 cut(s) 78, 144, 194, 236, 285, 297
HpySE526I ACGT 2 cut(s) 203, 610
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 2 cut(s) 192, 735
HspAI GCGC 3 cut(s) 71, 569, 719
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 698
Lsp1109I GCAGC 3 cut(s) 55, 428, 553
MaeI CTAG 1 cut(s) 711
MaeII ACGT 2 cut(s) 203, 610
MaeIII GTNAC 4 cut(s) 59, 92, 557, 611
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 2 cut(s) 400, 699
MfeI CAATTG 2 cut(s) 51, 549
MhlI GDGCHC 2 cut(s) 200, 333
MluCI AATT 6 cut(s) 32, 51, 395, 434, 530, 549
MlyI GAGTC 4 cut(s) 37, 296, 535, 651
MmeI TCCRAC 1 cut(s) 679
MseI TTAA 3 cut(s) 35, 426, 533
MslI CAYNNNNRTG 2 cut(s) 14, 512
MspCI CTTAAG 1 cut(s) 425
MspI CCGG 2 cut(s) 104, 161
MspR9I CCNGG 5 cut(s) 162, 461, 479, 573, 582
MunI CAATTG 2 cut(s) 51, 549
MvaI CCWGG 4 cut(s) 461, 479, 573, 582
MvnI CGCG 1 cut(s) 721
MwoI GCNNNNNNNGC 3 cut(s) 74, 79, 577
NciI CCSGG 1 cut(s) 162
NdeII GATC 1 cut(s) 225
NlaIII CATG 2 cut(s) 192, 735
NlaIV GGNNCC 1 cut(s) 465
NmuCI GTSAC 2 cut(s) 92, 611
PagI TCATGA 1 cut(s) 731
PfeI GAWTC 4 cut(s) 117, 210, 412, 484
PflMI CCANNNNNTGG 1 cut(s) 722
PfoI TCCNGGA 1 cut(s) 459
PkrI GCNGC 3 cut(s) 70, 443, 568
PleI GAGTC 4 cut(s) 37, 296, 535, 651
PpsI GAGTC 4 cut(s) 37, 296, 535, 651
PpuMI RGGWCCY 1 cut(s) 463
Psp124BI GAGCTC 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 463
Psp6I CCWGG 4 cut(s) 459, 477, 571, 580
PspEI GGTNACC 1 cut(s) 92
PspGI CCWGG 4 cut(s) 459, 477, 571, 580
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 4 cut(s) 163, 463, 578, 584
PspPPI RGGWCCY 1 cut(s) 463
PstNI CAGNNNCTG 1 cut(s) 385
RsaI GTAC 2 cut(s) 252, 451
RsaNI GTAC 2 cut(s) 251, 450
RseI CAYNNNNRTG 2 cut(s) 14, 512
SacI GAGCTC 1 cut(s) 200
SaqAI TTAA 3 cut(s) 35, 426, 533
SatI GCNGC 3 cut(s) 69, 442, 567
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 4 cut(s) 163, 463, 578, 584
SchI GAGTC 4 cut(s) 37, 296, 535, 651
ScrFI CCNGG 5 cut(s) 162, 461, 479, 573, 582
SduI GDGCHC 2 cut(s) 200, 333
SfcI CTRYAG 1 cut(s) 215
SinI GGWCC 1 cut(s) 463
SmiMI CAYNNNNRTG 2 cut(s) 14, 512
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 6 cut(s) 32, 51, 395, 434, 530, 549
SspMI CTAG 1 cut(s) 711
SstI GAGCTC 1 cut(s) 200
StyD4I CCNGG 5 cut(s) 160, 459, 477, 571, 580
TaaI ACNGT 5 cut(s) 59, 98, 376, 454, 557
TaiI ACGT 2 cut(s) 206, 613
TaqI TCGA 1 cut(s) 200
TaqII GACCGA 1 cut(s) 80
TasI AATT 6 cut(s) 32, 51, 395, 434, 530, 549
TfiI GAWTC 4 cut(s) 117, 210, 412, 484
Tru1I TTAA 3 cut(s) 35, 426, 533
Tru9I TTAA 3 cut(s) 35, 426, 533
TscAI CASTG 1 cut(s) 381
TseFI GTSAC 2 cut(s) 92, 611
TseI GCWGC 3 cut(s) 68, 441, 566
Tsp45I GTSAC 2 cut(s) 92, 611
TspDTI ATGAA 2 cut(s) 164, 177
TspGWI ACGGA 2 cut(s) 218, 267
TspRI CASTG 1 cut(s) 381
Van91I CCANNNNNTGG 1 cut(s) 722
Vha464I CTTAAG 1 cut(s) 425
VneI GTGCAC 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 463
XagI CCTNNNNNAGG 1 cut(s) 428
XapI RAATTY 2 cut(s) 395, 434
XbaI TCTAGA 1 cut(s) 710
XmiI GTMKAC 1 cut(s) 340
XspI CTAG 1 cut(s) 711
ZraI GACGTC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.