Rmu_sc0001196.1_g000008

Haloacid dehalogenase-like hydrolase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001196.1
N/A
Physical Location & Seq
Reverse (-)
47044 .. 47813
770 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
atgaaactggaggaacttgagaatatattggaacaatgtgctgctaagcacattcctatggtggttgccaatcctgatttttttactgttgaggctagagctttgcgtatcatctataaagcagacatggccttagttggtgtatctattgattctattgcagtgcgcgattcccttcaccatgataccaagggtgcaaatgcagctgcagtccaatcagttttaatcactggtggaatccatgcaactgaacttgaacttggtagttttgcaggcgtagcagatttatcttctgtgcaagctcttgcttccaaatatgatgatcacccatcgtatgtgttacctgcctttacttggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

12.78

Weight (kDa)

4.98

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 352
AccII CGCG 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 354
AgsI TTSAA 1 cut(s) 257
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AluBI AGCT 3 cut(s) 101, 206, 302
AluI AGCT 3 cut(s) 101, 206, 302
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 3 cut(s) 41, 203, 206
AspLEI GCGC 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 170, 317
BbvI GCAGC 3 cut(s) 28, 193, 215
BccI CCATC 1 cut(s) 337
BclI TGATCA 1 cut(s) 322
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 207
BfuAI ACCTGC 1 cut(s) 352
BisI GCNGC 3 cut(s) 42, 204, 207
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 3 cut(s) 43, 205, 208
BpmI CTGGAG 1 cut(s) 29
Bpu1102I GCTNAGC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse1I ACTGG 2 cut(s) 12, 235
BseDI CCNNGG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 354
BseNI ACTGG 2 cut(s) 12, 235
BseXI GCAGC 3 cut(s) 28, 193, 215
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 354
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 322
Bsp1720I GCTNAGC 1 cut(s) 45
BspANI GGCC 1 cut(s) 131
BspFNI CGCG 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 352
BsrI ACTGG 2 cut(s) 12, 235
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 322
BssT1I CCWWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 274, 300
BstDEI CTNAG 2 cut(s) 45, 133
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 1 cut(s) 325
BstMBI GATC 1 cut(s) 322
BstMWI GCNNNNNNNGC 3 cut(s) 128, 203, 278
BstSFI CTRYAG 1 cut(s) 207
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 3 cut(s) 28, 193, 215
BsuRI GGCC 1 cut(s) 131
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 168, 228
BveI ACCTGC 1 cut(s) 352
Cac8I GCNNGC 2 cut(s) 274, 300
CfoI GCGC 1 cut(s) 168
CviAII CATG 3 cut(s) 127, 182, 242
CviJI RGCY 5 cut(s) 95, 101, 131, 206, 302
CviKI_1 RGCY 5 cut(s) 95, 101, 131, 206, 302
DdeI CTNAG 2 cut(s) 45, 133
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 3 cut(s) 130, 185, 245
FaiI YATR 8 cut(s) 26, 59, 117, 128, 183, 243, 318, 336
FatI CATG 3 cut(s) 126, 181, 241
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 42, 204, 207
Fsp4HI GCNGC 3 cut(s) 42, 204, 207
FspBI CTAG 1 cut(s) 96
GlaI GCGC 1 cut(s) 167
GluI GCNGC 3 cut(s) 42, 204, 207
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 1 cut(s) 131
HhaI GCGC 1 cut(s) 168
Hin1II CATG 3 cut(s) 130, 185, 245
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HinfI GANTC 3 cut(s) 152, 170, 237
HphI GGTGA 2 cut(s) 170, 317
Hpy188III TCNNGA 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 7 cut(s) 161, 197, 203, 209, 245, 272, 298
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 203, 278
HpyF3I CTNAG 2 cut(s) 45, 133
Hsp92II CATG 3 cut(s) 130, 185, 245
HspAI GCGC 1 cut(s) 166
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 1 cut(s) 322
LpnPI CCDG 3 cut(s) 87, 216, 258
Lsp1109I GCAGC 3 cut(s) 28, 193, 215
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 339
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 1 cut(s) 282
MnlI CCTC 2 cut(s) 4, 85
MseI TTAA 1 cut(s) 224
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 206
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 128, 203, 278
NdeII GATC 1 cut(s) 322
NlaIII CATG 3 cut(s) 130, 185, 245
PfeI GAWTC 3 cut(s) 152, 170, 237
PkrI GCNGC 3 cut(s) 43, 205, 208
PstI CTGCAG 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 3 cut(s) 42, 204, 207
Sau3AI GATC 1 cut(s) 322
SetI ASST 4 cut(s) 103, 208, 304, 346
SfcI CTRYAG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SspMI CTAG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 1 cut(s) 88
TfiI GAWTC 3 cut(s) 152, 170, 237
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 2 cut(s) 168, 235
TseI GCWGC 3 cut(s) 41, 203, 206
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 168, 235
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.