Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001207.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

360418 .. 361646

Gene Structure 1229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgcttgaagaagaagtcaagtcaagggactcccccgacgattacaccccacggtgctggcacgcctgcgcacacgctcaaaagagacagtttgcacgtcaactgatcctcgacatcgtcaagtctgacgccgaccacgtcctctccaacgtttcctccacctgcgacctagcccaccacgtcagcgccaaggtctgcgagctcaagctcgcccagtcgcgcgtcaactccatgctcctccatttggacgcgattgtggagcaatttctgggtgcccatagcacttcttctttttttttgttcatcagaggtccaggaagctcaaagctccacgccgaaatcggttctgatttcgctggcagggcttggacgacatcactctgttggacggcgtggttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

133

Amino Acids

14.89

Weight (kDa)

6.42

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG4_N	PF20663	37 - 86	1.4e-08	Conserved oligomeric Golgi complex subunit 4, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	170
Acc16I	TGCGCA	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	272
AccII	CGCG	3 cut(s)	220, 222, 251
AclI	AACGTT	1 cut(s)	150
AclWI	GGATC	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	8
AjiI	CACGTC	3 cut(s)	98, 139, 181
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	4 cut(s)	202, 208, 321, 328
AluI	AGCT	4 cut(s)	202, 208, 321, 328
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	100
AspLEI	GCGC	3 cut(s)	71, 188, 222
AspS9I	GGNCC	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	204
BciT130I	CCWGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	170
BfoI	RGCGCY	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	1 cut(s)	311
BmgBI	CACGTC	3 cut(s)	98, 139, 181
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	315
BmrI	ACTGGG	1 cut(s)	208
BmuI	ACTGGG	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	50, 189
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 140, 158, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	50, 189
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	227
BseSI	GKGCMC	1 cut(s)	277
Bsh1236I	CGCG	3 cut(s)	220, 222, 251
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	204, 277
Bsp143I	GATC	1 cut(s)	105
BspFNI	CGCG	3 cut(s)	220, 222, 251
BspLI	GGNNCC	1 cut(s)	274
BspMI	ACCTGC	1 cut(s)	170
BspPI	GGATC	1 cut(s)	100
BspT107I	GGYRCC	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	50, 189
BssMI	GATC	1 cut(s)	105
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	54, 90
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	6 cut(s)	59, 63, 67, 200, 210, 358
BstDSI	CCRYGG	1 cut(s)	50
BstFNI	CGCG	3 cut(s)	220, 222, 251
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	71, 188, 222
BstKTI	GATC	1 cut(s)	108
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstSLI	GKGCMC	1 cut(s)	277
BstUI	CGCG	3 cut(s)	220, 222, 251
BstXI	CCANNNNNNTGG	1 cut(s)	57
BtgI	CCRYGG	1 cut(s)	50
BtrI	CACGTC	3 cut(s)	98, 139, 181
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	6 cut(s)	59, 63, 67, 200, 210, 358
CfoI	GCGC	3 cut(s)	71, 188, 222
Cfr13I	GGNCC	1 cut(s)	311
CseI	GACGC	3 cut(s)	137, 211, 257
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	6 cut(s)	173, 202, 208, 321, 328, 365
CviKI_1	RGCY	6 cut(s)	173, 202, 208, 321, 328, 365
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	1 cut(s)	235
FaiI	YATR	2 cut(s)	233, 279
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	1 cut(s)	231
FriOI	GRGCYC	1 cut(s)	204
FspBI	CTAG	1 cut(s)	170
FspI	TGCGCA	1 cut(s)	70
GlaI	GCGC	3 cut(s)	70, 187, 221
HaeII	RGCGCY	1 cut(s)	189
HgaI	GACGC	3 cut(s)	137, 211, 257
HhaI	GCGC	3 cut(s)	71, 188, 222
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	235
Hin6I	GCGC	3 cut(s)	69, 186, 220
HinP1I	GCGC	3 cut(s)	69, 186, 220
HincII	GTYRAC	2 cut(s)	101, 226
HindII	GTYRAC	2 cut(s)	101, 226
HinfI	GANTC	1 cut(s)	29
Hpy166II	GTNNAC	2 cut(s)	101, 226
Hpy188I	TCNGA	3 cut(s)	127, 308, 349
Hpy8I	GTNNAC	2 cut(s)	101, 226
Hpy99I	CGWCG	1 cut(s)	41
HpyCH4III	ACNGT	2 cut(s)	54, 90
HpyCH4IV	ACGT	4 cut(s)	97, 138, 150, 180
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpySE526I	ACGT	4 cut(s)	97, 138, 150, 180
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	235
HspAI	GCGC	3 cut(s)	69, 186, 220
Kzo9I	GATC	1 cut(s)	105
LmnI	GCTCC	3 cut(s)	240, 259, 333
LpnPI	CCDG	9 cut(s)	43, 79, 175, 227, 254, 300, 327, 342, 346
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	4 cut(s)	97, 138, 150, 180
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	3 cut(s)	20, 23, 279
MhlI	GDGCHC	2 cut(s)	204, 277
MluCI	AATT	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	2 cut(s)	171, 365
MnlI	CCTC	5 cut(s)	119, 152, 166, 248, 302
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	3 cut(s)	220, 222, 251
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	274
NsbI	TGCGCA	1 cut(s)	70
PaqCI	CACCTGC	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PflFI	GACNNNGTC	2 cut(s)	116, 137
PfoI	TCCNGGA	1 cut(s)	313
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	204
Psp1406I	AACGTT	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	311
PsyI	GACNNNGTC	2 cut(s)	116, 137
SacI	GAGCTC	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	2 cut(s)	204, 277
SinI	GGWCC	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	263
SspMI	CTAG	1 cut(s)	170
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	54, 90
TaiI	ACGT	4 cut(s)	100, 141, 153, 183
TaqI	TCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	292
Tth111I	GACNNNGTC	2 cut(s)	116, 137
VpaK11BI	GGWCC	1 cut(s)	311
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.