Rmu_sc0001209.1_g000006

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001209.1
N/A
Physical Location & Seq
Reverse (-)
20293 .. 20694
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001209.1_g000006.1.cds

Sequence Viewer

Length: 402 bp
atggcgtcaacttggtctcctcgtcaacgatggaaatacgatgtttttctaagcttcagagaggaagatacccgcgacactttcatctgccatctgtatcgtgcactaattgcgaaaggaattataaccttcatagatgacgaaagcctggagagaggatcaaccattggcccatcactttttacagcaattcaggactcaagattggccttcgtcgttctttcagagaatttcacttcttcatcctggtgcttggatgaactctcgaagattcttcaatgggcggaagagacaggacaaagagttgtcccgatcttctacggagtggatccttctgatgtgcgcaagcgaagttttcagctccgtacagtagaggttttttttttttggtcaaatagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

133

Amino Acids

15.54

Weight (kDa)

5.16

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 125
Acc16I TGCGCA 1 cut(s) 344
AccII CGCG 1 cut(s) 75
AciI CCGC 2 cut(s) 73, 284
AclWI GGATC 3 cut(s) 166, 323, 336
AcsI RAATTY 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 40
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 367
AgsI TTSAA 1 cut(s) 278
AjnI CCWGG 2 cut(s) 147, 245
AluBI AGCT 3 cut(s) 54, 361, 399
AluI AGCT 3 cut(s) 54, 361, 399
Alw21I GWGCWC 1 cut(s) 106
Alw26I GTCTC 2 cut(s) 21, 284
Alw44I GTGCAC 1 cut(s) 102
AlwI GGATC 3 cut(s) 166, 323, 336
AoxI GGCC 2 cut(s) 169, 207
ApaLI GTGCAC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 229
AspLEI GCGC 1 cut(s) 345
AspS9I GGNCC 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 106
BamHI GGATCC 1 cut(s) 328
Bbv12I GWGCWC 1 cut(s) 106
BccI CCATC 3 cut(s) 24, 99, 181
BciT130I CCWGG 2 cut(s) 149, 247
BcoDI GTCTC 2 cut(s) 21, 284
Bme1390I CCNGG 2 cut(s) 149, 247
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 2 cut(s) 149, 247
BpmI CTGGAG 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 184
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 21
BsaXI ACNNNNNCTCC 1 cut(s) 31
BseBI CCWGG 2 cut(s) 149, 247
BseGI GGATG 2 cut(s) 242, 262
BseRI GAGGAG 1 cut(s) 9
BseSI GKGCMC 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 171, 209
BsiHKAI GWGCWC 1 cut(s) 106
BslFI GGGAC 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 21, 284
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 2 cut(s) 171, 209
Bso31I GGTCTC 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 3 cut(s) 158, 312, 328
BspACI CCGC 2 cut(s) 73, 284
BspANI GGCC 2 cut(s) 171, 209
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 330
BspPI GGATC 3 cut(s) 166, 323, 336
BspTNI GGTCTC 1 cut(s) 21
BssMI GATC 3 cut(s) 158, 312, 328
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 149, 247
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 347
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 2 cut(s) 242, 262
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 3 cut(s) 161, 315, 331
BstMAI GTCTC 2 cut(s) 21, 284
BstMBI GATC 3 cut(s) 158, 312, 328
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 2 cut(s) 149, 247
BstSCI CCNGG 2 cut(s) 147, 245
BstSLI GKGCMC 1 cut(s) 106
BstUI CGCG 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuRI GGCC 2 cut(s) 171, 209
BtsCI GGATG 2 cut(s) 242, 262
Cac8I GCNNGC 1 cut(s) 347
CfoI GCGC 1 cut(s) 345
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 366
CviJI RGCY 6 cut(s) 54, 147, 171, 209, 361, 399
CviKI_1 RGCY 6 cut(s) 54, 147, 171, 209, 361, 399
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 1 cut(s) 50
DpnI GATC 3 cut(s) 160, 314, 330
DpnII GATC 3 cut(s) 158, 312, 328
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
EciI GGCGGA 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 40
EcoRII CCWGG 2 cut(s) 147, 245
FaiI YATR 2 cut(s) 125, 134
FaqI GGGAC 1 cut(s) 293
FauI CCCGC 1 cut(s) 80
FokI GGATG 2 cut(s) 229, 269
FspI TGCGCA 1 cut(s) 344
GlaI GCGC 1 cut(s) 344
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 2 cut(s) 171, 209
HhaI GCGC 1 cut(s) 345
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HincII GTYRAC 2 cut(s) 9, 26
HindII GTYRAC 2 cut(s) 9, 26
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 2 cut(s) 197, 271
Hpy166II GTNNAC 3 cut(s) 9, 26, 104
Hpy188I TCNGA 3 cut(s) 59, 226, 337
Hpy188III TCNNGA 4 cut(s) 194, 201, 265, 310
Hpy8I GTNNAC 3 cut(s) 9, 26, 104
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 139, 220, 342
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 50
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 343
Kzo9I GATC 3 cut(s) 158, 312, 328
LmnI GCTCC 1 cut(s) 366
LpnPI CCDG 6 cut(s) 134, 161, 179, 232, 259, 279
MalI GATC 3 cut(s) 160, 314, 330
MboI GATC 3 cut(s) 158, 312, 328
MboII GAAGA 6 cut(s) 77, 231, 266, 280, 299, 307
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 4 cut(s) 108, 120, 189, 229
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 4 cut(s) 30, 55, 149, 367
MslI CAYNNNNRTG 1 cut(s) 247
MspR9I CCNGG 2 cut(s) 149, 247
MvaI CCWGG 2 cut(s) 149, 247
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 3 cut(s) 158, 312, 328
NlaIV GGNNCC 1 cut(s) 330
NsbI TGCGCA 1 cut(s) 344
PfeI GAWTC 1 cut(s) 271
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PsiI TTATAA 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 147, 245
PspGI CCWGG 2 cut(s) 147, 245
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 1 cut(s) 170
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 1 cut(s) 247
Sau3AI GATC 3 cut(s) 158, 312, 328
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 2 cut(s) 149, 247
SduI GDGCHC 1 cut(s) 106
SetI ASST 5 cut(s) 56, 131, 363, 378, 401
SmiMI CAYNNNNRTG 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 4 cut(s) 108, 120, 189, 229
SsiI CCGC 2 cut(s) 73, 284
StyD4I CCNGG 2 cut(s) 147, 245
TaaI ACNGT 1 cut(s) 370
TaqI TCGA 1 cut(s) 266
TasI AATT 4 cut(s) 108, 120, 189, 229
TfiI GAWTC 1 cut(s) 271
TspDTI ATGAA 4 cut(s) 73, 121, 231, 273
TspGWI ACGGA 2 cut(s) 336, 353
VneI GTGCAC 1 cut(s) 102
XapI RAATTY 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.