Rmu_sc0001209.1_g000041

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001209.1
OG0031071
Physical Location & Seq
Reverse (-)
197392 .. 198052
661 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 534 bp
atgctggtaccaggaaacatcaaatccgcccctccaataacatatcgagaaacctcttttaacttgttcgactacaaaccctctcccttaacaaaacctcacaaaaacctcaagagctccgacgtcgtcgccgtcgccgacccttcccgcaacctctggttccgcctctacactcccaccaagctccccatcgtcttcttcttccacagcggcgggtttgtattcatgtccgccacttcaaaaccctacgacgacttctgtcaacgcctcgctctccagctccccgccgtcgtcgtctccttcaactaccgcctcgcgccggagcatcgcgcaccacgtggcaatcagagcgagcgagcacgagtttcgggatctgaaggtggcgggatcttggcgattcagccgtttttcggaggagaggagtggacggaatcggagaagagactgaagagtgtgccgctggtgatcgtagatgtggaagacgtttttgccggaggggtcggatcgggcaaatcacaatttgggattaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

177

Amino Acids

19.54

Weight (kDa)

9.27

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 65 - 113 4e-14 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031071)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000411.1_g000008 Rmu_sc0001209.1_g000041

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 126
Acc65I GGTACC 1 cut(s) 7
AccB1I GGYRCC 1 cut(s) 7
AccII CGCG 2 cut(s) 317, 330
AclWI GGATC 3 cut(s) 379, 395, 511
AcuI CTGAAG 2 cut(s) 396, 467
AcvI CACGTG 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 123
AdeI CACNNNGTG 1 cut(s) 338
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 319, 410
AgsI TTSAA 2 cut(s) 240, 304
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 3 cut(s) 117, 184, 280
AluI AGCT 3 cut(s) 117, 184, 280
Alw21I GWGCWC 2 cut(s) 119, 361
Alw26I GTCTC 2 cut(s) 301, 436
AlwI GGATC 3 cut(s) 379, 395, 511
Asp718I GGTACC 1 cut(s) 7
AspLEI GCGC 2 cut(s) 319, 332
AsuHPI GGTGA 1 cut(s) 475
BanI GGYRCC 1 cut(s) 7
BanII GRGCYC 1 cut(s) 119
BauI CACGAG 1 cut(s) 360
BbrPI CACGTG 1 cut(s) 338
BbsI GAAGAC 2 cut(s) 187, 486
Bbv12I GWGCWC 2 cut(s) 119, 361
BccI CCATC 1 cut(s) 197
BceAI ACGGC 3 cut(s) 116, 272, 388
BcgI CGANNNNNNTGC 2 cut(s) 348, 382
BciT130I CCWGG 1 cut(s) 12
BcoDI GTCTC 2 cut(s) 301, 436
BisI GCNGC 2 cut(s) 211, 458
BlsI GCNGC 2 cut(s) 212, 459
Bme1390I CCNGG 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 9, 161
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 1 cut(s) 334
BoxI GACNNNNGTC 1 cut(s) 258
BpiI GAAGAC 2 cut(s) 187, 486
BpmI CTGGAG 1 cut(s) 260
BpuEI CTTGAG 1 cut(s) 95
BsaAI YACGTR 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 123
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 410
BseBI CCWGG 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 319, 410
BseRI GAGGAG 2 cut(s) 429, 434
Bsh1236I CGCG 2 cut(s) 317, 330
BshNI GGYRCC 1 cut(s) 7
BsiHKAI GWGCWC 2 cut(s) 119, 361
BsiSI CCGG 2 cut(s) 320, 492
BslI CCNNNNNNNGG 2 cut(s) 319, 410
BsmAI GTCTC 2 cut(s) 301, 436
BsmBI CGTCTC 1 cut(s) 301
Bsp1286I GDGCHC 2 cut(s) 119, 361
Bsp143I GATC 4 cut(s) 371, 387, 465, 503
BspFNI CGCG 2 cut(s) 317, 330
BspLI GGNNCC 2 cut(s) 9, 161
BspPI GGATC 3 cut(s) 379, 395, 511
BspT107I GGYRCC 1 cut(s) 7
BssMI GATC 4 cut(s) 371, 387, 465, 503
BssNI GRCGYC 1 cut(s) 123
BssSI CACGAG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 12
Bst6I CTCTTC 2 cut(s) 434, 443
BstACI GRCGYC 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 338
BstC8I GCNNGC 2 cut(s) 353, 357
BstFNI CGCG 2 cut(s) 317, 330
BstHHI GCGC 2 cut(s) 319, 332
BstKTI GATC 4 cut(s) 374, 390, 468, 506
BstMAI GTCTC 2 cut(s) 301, 436
BstMBI GATC 4 cut(s) 371, 387, 465, 503
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstNI CCWGG 1 cut(s) 12
BstPAI GACNNNNGTC 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 10
BstUI CGCG 2 cut(s) 317, 330
BstV2I GAAGAC 2 cut(s) 187, 486
BstX2I RGATCY 2 cut(s) 371, 387
BstYI RGATCY 2 cut(s) 371, 387
BtgZI GCGATG 1 cut(s) 311
Cac8I GCNNGC 2 cut(s) 353, 357
CfoI GCGC 2 cut(s) 319, 332
Csp6I GTAC 1 cut(s) 8
CviAII CATG 1 cut(s) 226
CviJI RGCY 4 cut(s) 117, 184, 280, 403
CviKI_1 RGCY 4 cut(s) 117, 184, 280, 403
CviQI GTAC 1 cut(s) 8
DpnI GATC 4 cut(s) 373, 389, 467, 505
DpnII GATC 4 cut(s) 371, 387, 465, 503
DraIII CACNNNGTG 1 cut(s) 338
Eam1104I CTCTTC 2 cut(s) 434, 443
EarI CTCTTC 2 cut(s) 434, 443
EciI GGCGGA 3 cut(s) 16, 152, 220
Ecl136II GAGCTC 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 117
Eco57I CTGAAG 2 cut(s) 396, 467
Eco72I CACGTG 1 cut(s) 338
EcoICRI GAGCTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 119
Esp3I CGTCTC 1 cut(s) 301
FaeI CATG 1 cut(s) 229
FaiI YATR 2 cut(s) 43, 227
FatI CATG 1 cut(s) 225
FauI CCCGC 4 cut(s) 155, 206, 292, 377
Fnu4HI GCNGC 2 cut(s) 211, 458
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 211, 458
GlaI GCGC 2 cut(s) 318, 331
GluI GCNGC 2 cut(s) 211, 458
GsuI CTGGAG 1 cut(s) 260
HapII CCGG 2 cut(s) 320, 492
HhaI GCGC 2 cut(s) 319, 332
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 1 cut(s) 229
Hin6I GCGC 2 cut(s) 317, 330
HinP1I GCGC 2 cut(s) 317, 330
HincII GTYRAC 1 cut(s) 263
HindII GTYRAC 1 cut(s) 263
HinfI GANTC 2 cut(s) 397, 431
HpaII CCGG 2 cut(s) 320, 492
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 2 cut(s) 263, 426
Hpy188I TCNGA 6 cut(s) 121, 348, 376, 413, 436, 503
Hpy188III TCNNGA 3 cut(s) 47, 112, 369
Hpy8I GTNNAC 2 cut(s) 263, 426
Hpy99I CGWCG 7 cut(s) 125, 128, 131, 137, 254, 293, 296
HpyAV CCTTC 3 cut(s) 153, 310, 371
HpyCH4IV ACGT 3 cut(s) 123, 337, 483
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
HpySE526I ACGT 3 cut(s) 123, 337, 483
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 1 cut(s) 229
HspAI GCGC 2 cut(s) 317, 330
KpnI GGTACC 1 cut(s) 11
Kzo9I GATC 4 cut(s) 371, 387, 465, 503
LmnI GCTCC 4 cut(s) 122, 189, 285, 322
LpnPI CCDG 6 cut(s) 24, 142, 290, 333, 446, 505
LweI GCATC 1 cut(s) 334
MaeII ACGT 3 cut(s) 123, 337, 483
MalI GATC 4 cut(s) 373, 389, 467, 505
MboI GATC 4 cut(s) 371, 387, 465, 503
MboII GAAGA 6 cut(s) 187, 190, 193, 451, 460, 491
MflI RGATCY 2 cut(s) 371, 387
MhlI GDGCHC 2 cut(s) 119, 361
MluCI AATT 1 cut(s) 518
MmeI TCCRAC 2 cut(s) 144, 481
MseI TTAA 3 cut(s) 60, 89, 528
MspA1I CMGCKG 2 cut(s) 210, 460
MspI CCGG 2 cut(s) 320, 492
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
MvnI CGCG 2 cut(s) 317, 330
MwoI GCNNNNNNNGC 1 cut(s) 348
NdeII GATC 4 cut(s) 371, 387, 465, 503
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 2 cut(s) 9, 161
PcsI WCGNNNNNNNCGW 3 cut(s) 129, 135, 334
PfeI GAWTC 2 cut(s) 397, 431
PflFI GACNNNGTC 1 cut(s) 125
PkrI GCNGC 2 cut(s) 212, 459
PmaCI CACGTG 1 cut(s) 338
PmlI CACGTG 1 cut(s) 338
Ppu21I YACGTR 1 cut(s) 338
PshAI GACNNNNGTC 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 10
PspCI CACGTG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 9, 161
PsuI RGATCY 2 cut(s) 371, 387
PsyI GACNNNGTC 1 cut(s) 125
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SacI GAGCTC 1 cut(s) 119
SaqAI TTAA 3 cut(s) 60, 89, 528
SatI GCNGC 2 cut(s) 211, 458
Sau3AI GATC 4 cut(s) 371, 387, 465, 503
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 2 cut(s) 119, 361
SfaNI GCATC 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 518
SstI GAGCTC 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 10
TaiI ACGT 3 cut(s) 126, 340, 486
TaqI TCGA 2 cut(s) 46, 69
TasI AATT 1 cut(s) 518
TauI GCSGC 2 cut(s) 213, 460
TfiI GAWTC 2 cut(s) 397, 431
Tru1I TTAA 3 cut(s) 60, 89, 528
Tru9I TTAA 3 cut(s) 60, 89, 528
TspDTI ATGAA 1 cut(s) 214
TspGWI ACGGA 1 cut(s) 443
Tth111I GACNNNGTC 1 cut(s) 125
ZraI GACGTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.