Rmu_sc0001211.1_g000058

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001211.1
N/A
Physical Location & Seq
Reverse (-)
212225 .. 212560
336 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
atgcttgattcaactaacttggaataccacagttgggtcacagatattgagaatcatctcatttcgaaagggatcctacccataattcaggcaccaaaccctgagctcatatttgagcgtatggctacaaataatgccactgcccttatcttgatgagacgccacatggataaatcactccgattggaatacatggcgatcaaggatgctagagaactatgggttgcactagaagagcattttggtaatgtcaaggattccctcctccccgacttgaaggttcaatggagcaatctacgattcgctgacttcaagtctgcctctgaatacaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.94

Weight (kDa)

5.49

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AclWI GGATC 2 cut(s) 67, 80
AcyI GRCGYC 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 4 cut(s) 12, 277, 284, 313
AhdI GACNNNNNGTC 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 2 cut(s) 67, 80
AsuII TTCGAA 1 cut(s) 65
BamHI GGATCC 1 cut(s) 72
BanI GGYRCC 1 cut(s) 91
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 2 cut(s) 210, 230
BmeRI GACNNNNNGTC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 74, 93
BmsI GCATC 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 102
Bpu14I TTCGAA 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 34
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 254
BshNI GGYRCC 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 151
BsmBI CGTCTC 1 cut(s) 151
Bsp119I TTCGAA 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 72, 198
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 74, 93
BspPI GGATC 2 cut(s) 67, 80
BspQI GCTCTTC 1 cut(s) 228
BspT104I TTCGAA 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 91
BssMI GATC 2 cut(s) 72, 198
BssNI GRCGYC 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 2 cut(s) 75, 201
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 2 cut(s) 72, 198
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
BtsCI GGATG 1 cut(s) 211
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
CseI GACGC 1 cut(s) 168
CviAII CATG 2 cut(s) 166, 193
CviJI RGCY 2 cut(s) 106, 125
CviKI_1 RGCY 2 cut(s) 106, 125
DdeI CTNAG 1 cut(s) 102
DpnI GATC 2 cut(s) 74, 200
DpnII GATC 2 cut(s) 72, 198
DriI GACNNNNNGTC 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 228
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 2 cut(s) 169, 196
FaiI YATR 6 cut(s) 83, 110, 122, 167, 194, 220
FatI CATG 2 cut(s) 165, 192
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 108
FspBI CTAG 2 cut(s) 210, 230
HgaI GACGC 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 2 cut(s) 169, 196
HinfI GANTC 4 cut(s) 8, 52, 257, 300
Hpy188I TCNGA 2 cut(s) 182, 325
Hpy188III TCNNGA 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 227
HpyF3I CTNAG 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 2 cut(s) 169, 196
Kzo9I GATC 2 cut(s) 72, 198
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 2 cut(s) 74, 114
LweI GCATC 1 cut(s) 196
MaeI CTAG 2 cut(s) 210, 230
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 74, 200
MboI GATC 2 cut(s) 72, 198
MboII GAAGA 1 cut(s) 245
MflI RGATCY 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 2 cut(s) 84, 331
MnlI CCTC 3 cut(s) 272, 275, 331
MseI TTAA 1 cut(s) 334
NdeII GATC 2 cut(s) 72, 198
NlaIII CATG 2 cut(s) 169, 196
NlaIV GGNNCC 2 cut(s) 74, 93
NmuCI GTSAC 1 cut(s) 37
NspV TTCGAA 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 228
PfeI GAWTC 4 cut(s) 8, 52, 257, 300
Psp124BI GAGCTC 1 cut(s) 108
PspN4I GGNNCC 2 cut(s) 74, 93
PsuI RGATCY 1 cut(s) 72
SacI GAGCTC 1 cut(s) 108
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 1 cut(s) 334
Sau3AI GATC 2 cut(s) 72, 198
SduI GDGCHC 1 cut(s) 108
SetI ASST 2 cut(s) 108, 282
SfaNI GCATC 1 cut(s) 196
SfuI TTCGAA 1 cut(s) 65
Sse9I AATT 2 cut(s) 84, 331
SspMI CTAG 2 cut(s) 210, 230
SstI GAGCTC 1 cut(s) 108
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 1 cut(s) 65
TasI AATT 2 cut(s) 84, 331
TfiI GAWTC 4 cut(s) 8, 52, 257, 300
Tru1I TTAA 1 cut(s) 334
Tru9I TTAA 1 cut(s) 334
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 37
TspRI CASTG 1 cut(s) 145
XspI CTAG 2 cut(s) 210, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.