Rmu_sc0001218.1_g000040

receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001218.1
N/A
Physical Location & Seq
Forward (+)
159024 .. 159998
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001218.1_g000040.1.cds

Sequence Viewer

Length: 975 bp
atgccaactctgttgctccatttcttccttttcttaatcactaccactgttactaacctcatccccgcagttcacagcaactgtattgaagcccagcaacaatcattgctccatttcaaacaaagtcttgaatttaattcttccgaatcctccaagcttatcacatggaattcgagcaccgaatgctgttcttggctcggtgtcacttgcagcactattgggagtgttgttggtcttgacatcagcaacgagtctatctcatgcagcattgacaattcaagcactctctttcaacttcaacatcttcagagcctcaatttggccgataacaacttcaaaagctcttcaattccatctgcaattggaaagcttacaaagttgaggtatctgaatttaagtgatgcttttttttctggggttattcccattgagatttcacgcttaacaaggctgataactcttgatctctctagtaattcctacccctcttttgctgagaaccagaatttaagcatgctaattcagaacctcacagagcttacagagttatatcttgattcagtagtgctatcaggacaagggagtgactggtgcgaagccatatcatcttcgctgccaaatctgagggtgttgagcttgtccggttgtcgtctttcaggccctatatgtgactcccttgcaaagcttcaatctctgcaggagattgacttgtcacttaatcaactcaatgggagtattccttcatctgttgtttctcttcccaaactggaaagattaacactctcccacaatcggttctcgggtcaagtccctgaattttccaatacctcttcgcccttacttgaaacccttcatttgggaaacaacaatttggaaggacaaataccaacatctatcttcaatcttcaagggcttgaggatcttgatctttcttcaaacaacttcagtagcttccctttttgtggtcctcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

324

Amino Acids

35.36

Weight (kDa)

4.74

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 66
AclWI GGATC 1 cut(s) 927
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 5 cut(s) 131, 169, 391, 505, 815
AcuI CTGAAG 2 cut(s) 290, 928
AfiI CCNNNNNNNGG 4 cut(s) 319, 792, 856, 962
AluBI AGCT 7 cut(s) 157, 342, 370, 538, 636, 685, 951
AluI AGCT 7 cut(s) 157, 342, 370, 538, 636, 685, 951
Alw21I GWGCWC 1 cut(s) 179
AlwI GGATC 1 cut(s) 927
AlwNI CAGNNNCTG 1 cut(s) 81
Ama87I CYCGRG 1 cut(s) 799
AoxI GGCC 2 cut(s) 321, 658
ApeKI GCWGC 3 cut(s) 210, 264, 613
ApoI RAATTY 5 cut(s) 131, 169, 391, 505, 815
Asp700I GAANNNNTTC 1 cut(s) 849
AspS9I GGNCC 2 cut(s) 659, 965
AvaI CYCGRG 1 cut(s) 799
AvaII GGWCC 1 cut(s) 965
BarI GAAGNNNNNNTAC 2 cut(s) 867, 899
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 3 cut(s) 222, 276, 600
BccI CCATC 1 cut(s) 361
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 1 cut(s) 695
BisI GCNGC 3 cut(s) 211, 265, 614
BlsI GCNGC 3 cut(s) 212, 266, 615
Bme18I GGWCC 1 cut(s) 965
BmeT110I CYCGRG 1 cut(s) 799
BmgT120I GGNCC 2 cut(s) 659, 965
BmsI GCATC 1 cut(s) 391
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpuEI CTTGAG 1 cut(s) 935
BsaBI GATNNNNATC 1 cut(s) 924
BsaWI WCCGGW 1 cut(s) 641
Bsc4I CCNNNNNNNGG 4 cut(s) 319, 792, 856, 962
Bse1I ACTGG 2 cut(s) 593, 771
Bse3DI GCAATG 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 924
BseGI GGATG 1 cut(s) 60
BseJI GATNNNNATC 1 cut(s) 924
BseLI CCNNNNNNNGG 4 cut(s) 319, 792, 856, 962
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 2 cut(s) 486, 614
BseNI ACTGG 2 cut(s) 593, 771
BseXI GCAGC 3 cut(s) 222, 276, 600
BseYI CCCAGC 1 cut(s) 93
BshFI GGCC 2 cut(s) 323, 660
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 799
BsiSI CCGG 1 cut(s) 642
BslFI GGGAC 1 cut(s) 794
BslI CCNNNNNNNGG 4 cut(s) 319, 792, 856, 962
BsmFI GGGAC 1 cut(s) 794
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 2 cut(s) 323, 660
BsoBI CYCGRG 1 cut(s) 799
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 3 cut(s) 463, 919, 925
BspACI CCGC 1 cut(s) 66
BspANI GGCC 2 cut(s) 323, 660
BspCNI CTCAG 2 cut(s) 487, 615
BspMAI CTGCAG 1 cut(s) 699
BspPI GGATC 1 cut(s) 927
BspQI GCTCTTC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 104
BsrI ACTGG 2 cut(s) 593, 771
BssMI GATC 3 cut(s) 463, 919, 925
Bst4CI ACNGT 2 cut(s) 49, 83
Bst6I CTCTTC 3 cut(s) 349, 762, 835
BstAPI GCANNNNNTGC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 515
BstDEI CTNAG 2 cut(s) 495, 623
BstF5I GGATG 1 cut(s) 60
BstKTI GATC 3 cut(s) 466, 922, 928
BstMBI GATC 3 cut(s) 463, 919, 925
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 517
BstSFI CTRYAG 1 cut(s) 695
BstV1I GCAGC 3 cut(s) 222, 276, 600
BstX2I RGATCY 1 cut(s) 919
BstYI RGATCY 1 cut(s) 919
BsuRI GGCC 2 cut(s) 323, 660
BtsCI GGATG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 515
CaiI CAGNNNCTG 1 cut(s) 81
Cfr13I GGNCC 2 cut(s) 659, 965
CviAII CATG 3 cut(s) 165, 261, 514
DdeI CTNAG 2 cut(s) 495, 623
DpnI GATC 3 cut(s) 465, 921, 927
DpnII GATC 3 cut(s) 463, 919, 925
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 3 cut(s) 349, 762, 835
EarI CTCTTC 3 cut(s) 349, 762, 835
Eco47I GGWCC 1 cut(s) 965
Eco57I CTGAAG 2 cut(s) 290, 928
Eco88I CYCGRG 1 cut(s) 799
EcoO109I RGGNCCY 1 cut(s) 659
EcoRI GAATTC 1 cut(s) 169
FaeI CATG 3 cut(s) 168, 264, 517
FaiI YATR 7 cut(s) 166, 262, 515, 550, 602, 665, 667
FalI AAGNNNNNCTT 2 cut(s) 388, 420
FaqI GGGAC 1 cut(s) 794
FatI CATG 3 cut(s) 164, 260, 513
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 3 cut(s) 211, 265, 614
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 3 cut(s) 211, 265, 614
FspBI CTAG 1 cut(s) 471
GluI GCNGC 3 cut(s) 211, 265, 614
GsaI CCCAGC 1 cut(s) 97
HaeIII GGCC 2 cut(s) 323, 660
HapII CCGG 1 cut(s) 642
Hin1II CATG 3 cut(s) 168, 264, 517
HindIII AAGCTT 3 cut(s) 155, 368, 683
HinfI GANTC 4 cut(s) 146, 251, 557, 671
HpaII CCGG 1 cut(s) 642
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 5 cut(s) 145, 309, 390, 525, 624
Hpy188III TCNNGA 6 cut(s) 128, 236, 461, 554, 573, 923
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 3 cut(s) 750, 860, 869
HpyCH4III ACNGT 2 cut(s) 49, 83
HpyCH4V TGCA 5 cut(s) 210, 264, 359, 680, 697
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 2 cut(s) 495, 623
Hsp92II CATG 3 cut(s) 168, 264, 517
Kzo9I GATC 3 cut(s) 463, 919, 925
LguI GCTCTTC 1 cut(s) 349
LmnI GCTCC 2 cut(s) 21, 114
Lsp1109I GCAGC 3 cut(s) 222, 276, 600
LweI GCATC 1 cut(s) 391
MaeI CTAG 1 cut(s) 471
MaeIII GTNAC 5 cut(s) 49, 202, 584, 668, 711
MalI GATC 3 cut(s) 465, 921, 927
MboI GATC 3 cut(s) 463, 919, 925
MfeI CAATTG 1 cut(s) 360
MflI RGATCY 1 cut(s) 919
MhlI GDGCHC 1 cut(s) 179
MlyI GAGTC 2 cut(s) 260, 665
MnlI CCTC 9 cut(s) 68, 160, 323, 375, 496, 539, 618, 838, 910
MroXI GAANNNNTTC 1 cut(s) 849
MseI TTAA 7 cut(s) 35, 135, 395, 443, 509, 717, 776
MspI CCGG 1 cut(s) 642
MunI CAATTG 1 cut(s) 360
Mva1269I GAATGC 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 183
NdeII GATC 3 cut(s) 463, 919, 925
NlaIII CATG 3 cut(s) 168, 264, 517
NmuCI GTSAC 4 cut(s) 202, 584, 668, 711
NspI RCATGY 1 cut(s) 517
PaeI GCATGC 1 cut(s) 517
PciSI GCTCTTC 1 cut(s) 349
PctI GAATGC 1 cut(s) 188
PdmI GAANNNNTTC 1 cut(s) 849
PfeI GAWTC 2 cut(s) 146, 557
PkrI GCNGC 3 cut(s) 212, 266, 615
PleI GAGTC 2 cut(s) 259, 665
PpsI GAGTC 2 cut(s) 259, 665
PspFI CCCAGC 1 cut(s) 93
PspPI GGNCC 2 cut(s) 659, 965
PstI CTGCAG 1 cut(s) 699
PstNI CAGNNNCTG 1 cut(s) 81
PsuI RGATCY 1 cut(s) 919
SapI GCTCTTC 1 cut(s) 349
SaqAI TTAA 7 cut(s) 35, 135, 395, 443, 509, 717, 776
SatI GCNGC 3 cut(s) 211, 265, 614
Sau3AI GATC 3 cut(s) 463, 919, 925
Sau96I GGNCC 2 cut(s) 659, 965
SchI GAGTC 2 cut(s) 260, 665
SduI GDGCHC 1 cut(s) 179
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 695
SinI GGWCC 1 cut(s) 965
SmlI CTYRAG 1 cut(s) 914
SmoI CTYRAG 1 cut(s) 914
SphI GCATGC 1 cut(s) 517
SsiI CCGC 1 cut(s) 66
SspMI CTAG 1 cut(s) 471
TaaI ACNGT 2 cut(s) 49, 83
TaqI TCGA 1 cut(s) 173
TfiI GAWTC 2 cut(s) 146, 557
Tru1I TTAA 7 cut(s) 35, 135, 395, 443, 509, 717, 776
Tru9I TTAA 7 cut(s) 35, 135, 395, 443, 509, 717, 776
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 4 cut(s) 202, 584, 668, 711
TseI GCWGC 3 cut(s) 210, 264, 613
Tsp45I GTSAC 4 cut(s) 202, 584, 668, 711
TspDTI ATGAA 2 cut(s) 732, 842
TspRI CASTG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 965
XapI RAATTY 5 cut(s) 131, 169, 391, 505, 815
XceI RCATGY 1 cut(s) 517
XmnI GAANNNNTTC 1 cut(s) 849
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.