Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001235.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

158269 .. 163319

Gene Structure 5051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgcctcccaagtctgcaaaaggcaaggaagccccagctgagcgacccatcctcggccgattctcatctcacctcaagattggaatcgttggattgccgaatgttggaaaatctactcttttcaacacgctcacgaagttgtcgatacccgctgagaacttccctttctgcacaattgaacccaatgaagccagggtcaacattcctgacgagcggttcgactggctttgccaattgtacaagccgaaaagcgcggtatcagcctttttggaaatccatgatatagctggacttgttcgtggtgctcatgaaggacaagggttgggcaacagtttcttatcccatatccgtgctgttgatggcatttttcatgttttacgtgcatttgaagatccggatatcatccatgtcgatgatactgtggatcctgtgagggatttagagattatcagtgcagaattgcgtcttaaggacattgaattcatggaaaggaggatagaggatgttgaaaagagcatgaagaggagcaatgacaagcagctaaaagtagagcatgaactttgtggaagggctgccggtaagtacagacaagaagggaagacatacgtggtccaagatggagacataatattcttcaagttcaatgtttctggaggtgggaagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0055044 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

222

Amino Acids

24.85

Weight (kDa)

6.67

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	26 - 137	9.8e-21	50S ribosome-binding GTPase
FeoB_N	PF02421	26 - 72	1.2e-07	Ferrous iron transport protein B
YchF-GTPase_C	PF06071	182 - 215	8.2e-08	Protein of unknown function (DUF933)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	214
AccII	CGCG	1 cut(s)	254
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	3 cut(s)	150, 214, 254
AclWI	GGATC	3 cut(s)	386, 419, 432
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	479
AfaI	GTAC	2 cut(s)	239, 584
AfiI	CCNNNNNNNGG	2 cut(s)	53, 104
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	7 cut(s)	124, 179, 389, 479, 509, 637, 643
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	3 cut(s)	38, 287, 541
AluI	AGCT	3 cut(s)	38, 287, 541
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	615
AlwI	GGATC	3 cut(s)	386, 419, 432
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	538, 572
ApoI	RAATTY	1 cut(s)	479
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	610
AsuHPI	GGTGA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	610
BamHI	GGATCC	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	605
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	550, 559
BccI	CCATC	3 cut(s)	56, 353, 611
BciT130I	CCWGG	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	615
BfrI	CTTAAG	1 cut(s)	467
BisI	GCNGC	2 cut(s)	539, 573
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	2 cut(s)	540, 574
Bme1390I	CCNGG	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	610
BmgT120I	GGNCC	1 cut(s)	610
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	605
Bpu1102I	GCTNAGC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	59
BsaAI	YACGTR	2 cut(s)	380, 607
BsaBI	GATNNNNATC	2 cut(s)	64, 83
BsaJI	CCNNGG	2 cut(s)	52, 192
BsaWI	WCCGGW	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 104
Bse118I	RCCGGY	1 cut(s)	575
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	535
Bse8I	GATNNNNATC	2 cut(s)	64, 83
BseAI	TCCGGA	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	52, 192
BseGI	GGATG	3 cut(s)	48, 402, 508
BseJI	GATNNNNATC	2 cut(s)	64, 83
BseLI	CCNNNNNNNGG	2 cut(s)	53, 104
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	2 cut(s)	30, 144
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	538
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	550, 559
BseYI	CCCAGC	1 cut(s)	34
BsgI	GTGCAG	2 cut(s)	154, 474
Bsh1236I	CGCG	1 cut(s)	254
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	57
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	307
BsiSI	CCGG	2 cut(s)	395, 576
BslI	CCNNNNNNNGG	2 cut(s)	53, 104
BsmAI	GTCTC	1 cut(s)	615
BsnI	GGCC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp13I	TCCGGA	1 cut(s)	394
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	391, 424
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	3 cut(s)	150, 214, 254
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	2 cut(s)	31, 145
BspEI	TCCGGA	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	426
BspPI	GGATC	3 cut(s)	386, 419, 432
BspTI	CTTAAG	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	535
BsrFI	RCCGGY	1 cut(s)	575
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	2 cut(s)	52, 192
BssMI	GATC	2 cut(s)	391, 424
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	332, 421
Bst6I	CTCTTC	1 cut(s)	515
BstAFI	CTTAAG	1 cut(s)	467
BstAUI	TGTACA	1 cut(s)	237
BstBAI	YACGTR	2 cut(s)	380, 607
BstDEI	CTNAG	2 cut(s)	39, 153
BstF5I	GGATG	3 cut(s)	48, 402, 508
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	2 cut(s)	394, 427
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	2 cut(s)	391, 424
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	191
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	2 cut(s)	550, 559
BstV2I	GAAGAC	1 cut(s)	605
BstX2I	RGATCY	2 cut(s)	391, 424
BstYI	RGATCY	2 cut(s)	391, 424
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	3 cut(s)	48, 402, 508
BtsIMutI	CAGTG	1 cut(s)	457
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	1 cut(s)	254
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	1 cut(s)	610
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	238, 583
CviAII	CATG	7 cut(s)	278, 308, 371, 407, 484, 517, 554
CviQI	GTAC	2 cut(s)	238, 583
DdeI	CTNAG	2 cut(s)	39, 153
DpnI	GATC	2 cut(s)	393, 426
DpnII	GATC	2 cut(s)	391, 424
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
EclXI	CGGCCG	1 cut(s)	55
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	610
Eco52I	CGGCCG	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	191
EcoRV	GATATC	1 cut(s)	400
FaeI	CATG	7 cut(s)	281, 311, 374, 410, 487, 520, 557
FatI	CATG	7 cut(s)	277, 307, 370, 406, 483, 516, 553
FauI	CCCGC	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	539, 573
FokI	GGATG	3 cut(s)	35, 389, 515
Fsp4HI	GCNGC	2 cut(s)	539, 573
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	2 cut(s)	539, 573
GsaI	CCCAGC	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	2 cut(s)	395, 576
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	7 cut(s)	281, 311, 374, 410, 487, 520, 557
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	60, 84
HpaII	CCGG	2 cut(s)	395, 576
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188III	TCNNGA	6 cut(s)	76, 133, 206, 308, 395, 651
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	3 cut(s)	305, 561, 587
HpyCH4III	ACNGT	2 cut(s)	332, 421
HpyCH4IV	ACGT	2 cut(s)	379, 606
HpyCH4V	TGCA	4 cut(s)	17, 171, 383, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	39, 153
HpySE526I	ACGT	2 cut(s)	379, 606
Hsp92II	CATG	7 cut(s)	281, 311, 374, 410, 487, 520, 557
HspAI	GCGC	1 cut(s)	252
Kpn2I	TCCGGA	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	391, 424
LmnI	GCTCC	1 cut(s)	525
Lsp1109I	GCAGC	2 cut(s)	550, 559
MaeII	ACGT	2 cut(s)	379, 606
MalI	GATC	2 cut(s)	393, 426
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	2 cut(s)	391, 424
MboII	GAAGA	4 cut(s)	401, 532, 610, 625
MfeI	CAATTG	2 cut(s)	174, 233
MflI	RGATCY	2 cut(s)	391, 424
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	4 cut(s)	174, 233, 458, 479
MmeI	TCCRAC	2 cut(s)	70, 85
MnlI	CCTC	8 cut(s)	15, 62, 83, 426, 486, 493, 516, 647
MroI	TCCGGA	1 cut(s)	394
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	2 cut(s)	348, 411
MspA1I	CMGCKG	2 cut(s)	38, 152
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	2 cut(s)	395, 576
MspR9I	CCNGG	1 cut(s)	193
MunI	CAATTG	2 cut(s)	174, 233
MvaI	CCWGG	1 cut(s)	193
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	2 cut(s)	391, 424
NlaIII	CATG	7 cut(s)	281, 311, 374, 410, 487, 520, 557
NlaIV	GGNNCC	1 cut(s)	426
NmeAIII	GCCGAG	1 cut(s)	33
PagI	TCATGA	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	2 cut(s)	140, 216
PfeI	GAWTC	2 cut(s)	60, 84
PkrI	GCNGC	2 cut(s)	540, 574
Ppu21I	YACGTR	2 cut(s)	380, 607
Psp6I	CCWGG	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	610
PsuI	RGATCY	2 cut(s)	391, 424
PvuII	CAGCTG	1 cut(s)	38
RsaI	GTAC	2 cut(s)	239, 584
RsaNI	GTAC	2 cut(s)	238, 583
RseI	CAYNNNNRTG	2 cut(s)	348, 411
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	2 cut(s)	539, 573
Sau3AI	GATC	2 cut(s)	391, 424
Sau96I	GGNCC	1 cut(s)	610
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	7 cut(s)	40, 75, 289, 382, 543, 609, 658
SinI	GGWCC	1 cut(s)	610
SmiMI	CAYNNNNRTG	2 cut(s)	348, 411
SmlI	CTYRAG	2 cut(s)	74, 467
SmoI	CTYRAG	2 cut(s)	74, 467
Sse9I	AATT	4 cut(s)	174, 233, 458, 479
SsiI	CCGC	3 cut(s)	150, 214, 254
SspI	AATATT	1 cut(s)	630
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	2 cut(s)	332, 421
TaiI	ACGT	2 cut(s)	382, 609
TaqI	TCGA	3 cut(s)	143, 219, 411
TasI	AATT	4 cut(s)	174, 233, 458, 479
TatI	WGTACW	2 cut(s)	237, 582
TfiI	GAWTC	2 cut(s)	60, 84
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	457
TseI	GCWGC	2 cut(s)	538, 572
TspDTI	ATGAA	6 cut(s)	201, 324, 359, 472, 533, 570
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	457
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	610
XapI	RAATTY	1 cut(s)	479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.