Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001241.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

10376 .. 10753

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgagtaagtcgaccttcagtgccctgcatgaaaaagtgggaagcaatattgggttgattcttgatgttccgagaagtagtcttggcatgatcaaaagaaaatggcattctgctttcattaccatctattgctctagagccttcctctctttacgaacttctactcttcccaaacataccaactccacattcatatctcgcacaatctcttactccattgttagagtcgagccagccttgatcccagccattaatggattcaaagcagaccaaaaaagcctcactacgcttgtgaaggagaaaaatctcaaggagctcttggatcttgatacgctaaaaacaagcgctcaacttaaccctgcaagatgtagtcgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

125

Amino Acids

13.92

Weight (kDa)

10.2

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	11
AclWI	GGATC	2 cut(s)	235, 330
AfeI	AGCGCT	1 cut(s)	346
AgsI	TTSAA	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw21I	GWGCWC	1 cut(s)	318
AlwI	GGATC	2 cut(s)	235, 330
Aor51HI	AGCGCT	1 cut(s)	346
AseI	ATTAAT	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	318
BccI	CCATC	1 cut(s)	131
BclI	TGATCA	1 cut(s)	90
BfaI	CTAG	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	348
BplI	GAGNNNNNCTC	2 cut(s)	129, 161
BpuEI	CTTGAG	1 cut(s)	293
BseSI	GKGCMC	1 cut(s)	25
BseYI	CCCAGC	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	106
Bsp1286I	GDGCHC	2 cut(s)	25, 318
Bsp143I	GATC	3 cut(s)	90, 240, 322
BspPI	GGATC	2 cut(s)	235, 330
BssMI	GATC	3 cut(s)	90, 240, 322
Bst6I	CTCTTC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	234
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	3 cut(s)	93, 243, 325
BstMBI	GATC	3 cut(s)	90, 240, 322
BstSLI	GKGCMC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	1 cut(s)	347
CviAII	CATG	2 cut(s)	29, 88
CviJI	RGCY	6 cut(s)	140, 232, 236, 248, 279, 316
CviKI_1	RGCY	6 cut(s)	140, 232, 236, 248, 279, 316
DpnI	GATC	3 cut(s)	92, 242, 324
DpnII	GATC	3 cut(s)	90, 240, 322
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	318
Eco47III	AGCGCT	1 cut(s)	346
Eco53kI	GAGCTC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	2 cut(s)	32, 91
FaiI	YATR	4 cut(s)	30, 89, 177, 194
FalI	AAGNNNNNCTT	3 cut(s)	31, 302, 334
FatI	CATG	2 cut(s)	28, 87
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	11
FriOI	GRGCYC	1 cut(s)	318
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	1 cut(s)	346
GsaI	CCCAGC	1 cut(s)	248
HaeII	RGCGCY	1 cut(s)	348
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	2 cut(s)	32, 91
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	3 cut(s)	58, 225, 258
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	3 cut(s)	62, 135, 326
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	3 cut(s)	25, 151, 289
HpyCH4V	TGCA	2 cut(s)	28, 362
Hsp92II	CATG	2 cut(s)	32, 91
HspAI	GCGC	1 cut(s)	345
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	90, 240, 322
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	4 cut(s)	38, 246, 258, 372
MaeI	CTAG	1 cut(s)	135
MalI	GATC	3 cut(s)	92, 242, 324
MboI	GATC	3 cut(s)	90, 240, 322
MboII	GAAGA	1 cut(s)	158
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	2 cut(s)	25, 318
MlyI	GAGTC	1 cut(s)	234
MnlI	CCTC	2 cut(s)	155, 290
MseI	TTAA	2 cut(s)	252, 354
Mva1269I	GAATGC	1 cut(s)	106
NdeII	GATC	3 cut(s)	90, 240, 322
NlaIII	CATG	2 cut(s)	32, 91
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	58, 258
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PshBI	ATTAAT	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	318
SalI	GTCGAC	1 cut(s)	10
SaqAI	TTAA	2 cut(s)	252, 354
Sau3AI	GATC	3 cut(s)	90, 240, 322
SchI	GAGTC	1 cut(s)	234
SduI	GDGCHC	2 cut(s)	25, 318
SetI	ASST	2 cut(s)	17, 318
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SspI	AATATT	1 cut(s)	49
SspMI	CTAG	1 cut(s)	135
SstI	GAGCTC	1 cut(s)	318
TaqI	TCGA	2 cut(s)	11, 228
TfiI	GAWTC	2 cut(s)	58, 258
Tru1I	TTAA	2 cut(s)	252, 354
Tru9I	TTAA	2 cut(s)	252, 354
TscAI	CASTG	1 cut(s)	25
TspDTI	ATGAA	3 cut(s)	45, 106, 181
TspRI	CASTG	1 cut(s)	25
VspI	ATTAAT	1 cut(s)	252
XbaI	TCTAGA	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.