Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001241.1

Orthogroup ID

OG0031122

Physical Location & Seq

Genomic Coordinates Forward (+)

12215 .. 12808

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ctgagtccacaactcgtcgcccgagtcatcgatcctttcctcctcaaccaccactctctcactcttggcttcttcaactgggcttctcaacagccctccttctcccacacctccaccacctaccaatcagtcctcaagtcactttcttttttccgccaattttccgccattgatgctctgctcaagcaagtcagagcccagagaatcggcctcgatgcatcggtctatcgctctgtgattgcttcactcatcataggaaagaaaacccacaatgcctttttggtgttcggcgagtttgggattgaagatattgggcatgagatttgcaactcactcttggctgctctggcttctgatgggtatttggagcatgcccagaaggtgtttgaagaaatgactctgagtactgtgcctgtaagcaccgctggatttggtgtgtttgtgtggcggctatgtggaaacgctgaattgagtaagatattgagtatgttcgacatgtgttggggaggtgggaagagacgagaagctggtggtctggagtcggatttccgatgtaattccagcgacggtggagagagagagtctgggaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MNE1 PPR PPR_2 PPR_3

Protein Analysis

197

Amino Acids

21.67

Weight (kDa)

6.65

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031122)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001241.1_g000005 Rmu_sc0001738.1_g000023

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	154, 165, 423, 448
AclWI	GGATC	1 cut(s)	26
AfaI	GTAC	1 cut(s)	406
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	3 cut(s)	76, 305, 389
AluBI	AGCT	1 cut(s)	527
AluI	AGCT	1 cut(s)	527
Alw26I	GTCTC	1 cut(s)	511
AlwI	GGATC	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	21
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	341
AvaI	CYCGRG	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	511
BisI	GCNGC	2 cut(s)	342, 449
BlsI	GCNGC	2 cut(s)	343, 450
BmcAI	AGTACT	1 cut(s)	406
BmeT110I	CYCGRG	1 cut(s)	21
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	3 cut(s)	163, 205, 227
BmuI	ACTGGG	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	557
BpuEI	CTTGAG	2 cut(s)	119, 167
Bsa29I	ATCGAT	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	83
BseCI	ATCGAT	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	328
BshFI	GGCC	1 cut(s)	210
BshVI	ATCGAT	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	511
BsmBI	CGTCTC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	210
BsoBI	CYCGRG	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	4 cut(s)	154, 165, 423, 448
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	393
BspDI	ATCGAT	1 cut(s)	30
BspPI	GGATC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	83
BssMI	GATC	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	409, 569
Bst6I	CTCTTC	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	2, 401
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 347
BstNSI	RCATGY	2 cut(s)	374, 499
BstV1I	GCAGC	1 cut(s)	328
Bsu15I	ATCGAT	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	210
BsuTUI	ATCGAT	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	372
ClaI	ATCGAT	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	3 cut(s)	317, 371, 496
CviJI	RGCY	9 cut(s)	69, 83, 94, 197, 210, 341, 350, 451, 527
CviKI_1	RGCY	9 cut(s)	69, 83, 94, 197, 210, 341, 350, 451, 527
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	2 cut(s)	2, 401
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
EciI	GGCGGA	2 cut(s)	143, 154
Eco24I	GRGCYC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	199
Esp3I	CGTCTC	1 cut(s)	511
FaeI	CATG	3 cut(s)	320, 374, 499
FaiI	YATR	6 cut(s)	254, 318, 372, 454, 488, 497
FatI	CATG	3 cut(s)	316, 370, 495
Fnu4HI	GCNGC	2 cut(s)	342, 449
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	2 cut(s)	342, 449
GluI	GCNGC	2 cut(s)	342, 449
GsuI	CTGGAG	1 cut(s)	557
HaeIII	GGCC	1 cut(s)	210
Hin1II	CATG	3 cut(s)	320, 374, 499
HinfI	GANTC	6 cut(s)	4, 24, 204, 397, 539, 581
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	5 cut(s)	194, 355, 402, 544, 551
Hpy188III	TCNNGA	1 cut(s)	536
Hpy8I	GTNNAC	1 cut(s)	8
Hpy99I	CGWCG	2 cut(s)	20, 569
HpyAV	CCTTC	2 cut(s)	109, 373
HpyCH4III	ACNGT	2 cut(s)	409, 569
HpyCH4V	TGCA	2 cut(s)	218, 327
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 347
HpyF3I	CTNAG	2 cut(s)	2, 401
Hsp92II	CATG	3 cut(s)	320, 374, 499
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	3 cut(s)	163, 205, 227
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	4 cut(s)	64, 317, 401, 526
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	3 cut(s)	158, 467, 556
MlyI	GAGTC	5 cut(s)	13, 33, 391, 548, 590
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	8 cut(s)	50, 53, 106, 121, 143, 221, 500, 582
Mph1103I	ATGCAT	1 cut(s)	220
MspA1I	CMGCKG	1 cut(s)	425
MwoI	GCNNNNNNNGC	2 cut(s)	173, 347
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	3 cut(s)	320, 374, 499
NmuCI	GTSAC	1 cut(s)	138
NsiI	ATGCAT	1 cut(s)	220
NspI	RCATGY	2 cut(s)	374, 499
PaeI	GCATGC	1 cut(s)	374
PciI	ACATGT	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	2 cut(s)	343, 450
PleI	GAGTC	5 cut(s)	12, 32, 391, 547, 589
PpsI	GAGTC	5 cut(s)	12, 32, 391, 547, 589
PscI	ACATGT	1 cut(s)	495
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
SatI	GCNGC	2 cut(s)	342, 449
Sau3AI	GATC	1 cut(s)	31
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	5 cut(s)	13, 33, 391, 548, 590
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	6 cut(s)	113, 122, 384, 511, 529, 593
SfaNI	GCATC	3 cut(s)	163, 205, 227
SmlI	CTYRAG	2 cut(s)	134, 182
SmoI	CTYRAG	2 cut(s)	134, 182
SphI	GCATGC	1 cut(s)	374
Sse9I	AATT	3 cut(s)	158, 467, 556
SsiI	CCGC	4 cut(s)	154, 165, 423, 448
TaaI	ACNGT	2 cut(s)	409, 569
TaqI	TCGA	3 cut(s)	30, 213, 492
TaqII	GACCGA	1 cut(s)	211
TasI	AATT	3 cut(s)	158, 467, 556
TatI	WGTACW	1 cut(s)	404
TauI	GCSGC	1 cut(s)	451
TfiI	GAWTC	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	138
XceI	RCATGY	2 cut(s)	374, 499
ZrmI	AGTACT	1 cut(s)	406
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.