Rmu_sc0001256.1_g000007

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001256.1
N/A
Physical Location & Seq
Forward (+)
32501 .. 32809
309 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 309 bp
atggatcaacgacttaaagctcaaaacttcacgggtccatgtagctatgaaccaaacatatttcatagccgatatagaatgcaaccttgggtctttgacaggatgatatgtgacgtggccaactacgacccatattttatccaaacaagatatgctactaggagagtcggcttttttattgaacaaaagctgacatgggttatgaggatgctcgtgtatggcattatagttgacttctgcgatgagctcctggacatagaggaatccacttccatcgagattttagagctcttcacaagagcaatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

102

Amino Acids

12.32

Weight (kDa)

5.04

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 117
AgsI TTSAA 1 cut(s) 182
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 249
AjuI GAANNNNNNNTTGG 2 cut(s) 70, 102
AluBI AGCT 5 cut(s) 20, 45, 190, 247, 289
AluI AGCT 5 cut(s) 20, 45, 190, 247, 289
Alw21I GWGCWC 2 cut(s) 249, 291
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 35
AvaII GGWCC 1 cut(s) 35
BalI TGGCCA 1 cut(s) 119
BanII GRGCYC 2 cut(s) 249, 291
BauI CACGAG 1 cut(s) 212
Bbv12I GWGCWC 2 cut(s) 249, 291
BccI CCATC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 251
BfaI CTAG 2 cut(s) 159, 307
Bme1390I CCNGG 1 cut(s) 251
Bme18I GGWCC 1 cut(s) 35
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 86
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 86
BseGI GGATG 2 cut(s) 108, 213
BshFI GGCC 1 cut(s) 119
BsiHKAI GWGCWC 2 cut(s) 249, 291
BsmI GAATGC 1 cut(s) 84
BsnI GGCC 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 249, 291
Bsp143I GATC 1 cut(s) 4
BspANI GGCC 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 1 cut(s) 4
BssSI CACGAG 1 cut(s) 212
BssT1I CCWWGG 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 296
BstF5I GGATG 2 cut(s) 108, 213
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BsuRI GGCC 1 cut(s) 119
BtgZI GCGATG 1 cut(s) 255
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 2 cut(s) 108, 213
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 2 cut(s) 39, 195
CviJI RGCY 8 cut(s) 20, 45, 69, 119, 171, 190, 247, 289
CviKI_1 RGCY 8 cut(s) 20, 45, 69, 119, 171, 190, 247, 289
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Ecl136II GAGCTC 2 cut(s) 247, 289
Eco130I CCWWGG 1 cut(s) 86
Eco24I GRGCYC 2 cut(s) 249, 291
Eco47I GGWCC 1 cut(s) 35
Eco53kI GAGCTC 2 cut(s) 247, 289
EcoICRI GAGCTC 2 cut(s) 247, 289
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 86
EcoT38I GRGCYC 2 cut(s) 249, 291
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 2 cut(s) 42, 198
FatI CATG 2 cut(s) 38, 194
FokI GGATG 2 cut(s) 115, 220
FriOI GRGCYC 2 cut(s) 249, 291
FspBI CTAG 2 cut(s) 159, 307
HaeIII GGCC 1 cut(s) 119
Hin1II CATG 2 cut(s) 42, 198
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 2 cut(s) 165, 263
Hpy166II GTNNAC 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 277
Hpy8I GTNNAC 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 82
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 2 cut(s) 42, 198
Kzo9I GATC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 3 cut(s) 85, 236, 263
LweI GCATC 1 cut(s) 198
MaeI CTAG 2 cut(s) 159, 307
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 283
MhlI GDGCHC 2 cut(s) 249, 291
MlsI TGGCCA 1 cut(s) 119
MluNI TGGCCA 1 cut(s) 119
MlyI GAGTC 1 cut(s) 174
MnlI CCTC 2 cut(s) 198, 253
Mox20I TGGCCA 1 cut(s) 119
MscI TGGCCA 1 cut(s) 119
MseI TTAA 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 251
Mva1269I GAATGC 1 cut(s) 84
MvaI CCWGG 1 cut(s) 251
NdeII GATC 1 cut(s) 4
NlaIII CATG 2 cut(s) 42, 198
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 110
PciSI GCTCTTC 1 cut(s) 296
PctI GAATGC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 263
PfoI TCCNGGA 1 cut(s) 249
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Psp124BI GAGCTC 2 cut(s) 249, 291
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 35
SacI GAGCTC 2 cut(s) 249, 291
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 15
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 2 cut(s) 249, 291
SetI ASST 7 cut(s) 22, 47, 88, 117, 192, 249, 291
SfaNI GCATC 1 cut(s) 198
SinI GGWCC 1 cut(s) 35
SspMI CTAG 2 cut(s) 159, 307
SstI GAGCTC 2 cut(s) 249, 291
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 1 cut(s) 86
TaiI ACGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 276
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 53, 63
VpaK11BI GGWCC 1 cut(s) 35
XspI CTAG 2 cut(s) 159, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.