Rmu_sc0001267.1_g000043

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001267.1
N/A
Physical Location & Seq
Forward (+)
185476 .. 185781
306 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 306 bp
atgactcgtcatatggatgattcgctccagtacgagtgtatgaatgaagaagaccctagaaggttgtgggcctcacttgaagaaagatttggcaacgtctgtgactccctgcttcttgacctagaagtgagatggcatagcctccgcttatgtgatttcaagtcagttcttgacaacaactcggaagcacttcgcattaaatccttaatggaattctgtggtaaagagatcacagatgcgatgttgattgagaaaactctctctaccttcctcgtctctgcattgatggttgctaagaactattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

11.82

Weight (kDa)

4.83

Isoelectric Point (pI)

59.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 2 cut(s) 80, 160
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
Alw26I GTCTC 1 cut(s) 280
AoxI GGCC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 57
BccI CCATC 2 cut(s) 126, 280
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 2 cut(s) 57, 122
BmgT120I GGNCC 1 cut(s) 69
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 28
BshFI GGCC 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
BsnI GGCC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 228
BspACI CCGC 1 cut(s) 145
BspANI GGCC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 28
BssMI GATC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 231
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 1 cut(s) 228
BstV2I GAAGAC 1 cut(s) 57
BsuRI GGCC 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 31
CviJI RGCY 2 cut(s) 71, 141
CviKI_1 RGCY 2 cut(s) 71, 141
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 294
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
EcoRI GAATTC 1 cut(s) 212
Esp3I CGTCTC 1 cut(s) 280
FaiI YATR 5 cut(s) 12, 14, 41, 138, 151
FauNDI CATATG 1 cut(s) 12
FokI GGATG 1 cut(s) 29
FspBI CTAG 2 cut(s) 57, 122
GsuI CTGGAG 1 cut(s) 11
HaeIII GGCC 1 cut(s) 71
HinfI GANTC 3 cut(s) 4, 20, 104
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 2 cut(s) 116, 170
HpyAV CCTTC 2 cut(s) 54, 277
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 96
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 2 cut(s) 41, 122
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 57, 122
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 101
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 3 cut(s) 59, 62, 92
MluCI AATT 1 cut(s) 212
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 3 cut(s) 82, 152, 281
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 2 cut(s) 198, 206
MslI CAYNNNNRTG 1 cut(s) 15
NdeI CATATG 1 cut(s) 12
NdeII GATC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 20
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 69
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 2 cut(s) 198, 206
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 1 cut(s) 69
SchI GAGTC 1 cut(s) 98
SetI ASST 4 cut(s) 65, 99, 123, 269
SfaNI GCATC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 1 cut(s) 212
SsiI CCGC 1 cut(s) 145
SspMI CTAG 2 cut(s) 57, 122
TaiI ACGT 1 cut(s) 99
TasI AATT 1 cut(s) 212
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 198, 206
Tru9I TTAA 2 cut(s) 198, 206
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 2 cut(s) 56, 60
XapI RAATTY 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 2 cut(s) 57, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.