Rmu_sc0001279.1_g000006

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001279.1
N/A
Physical Location & Seq
Forward (+)
34880 .. 40502
5623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001279.1_g000006.1.cds

Sequence Viewer

Length: 693 bp
atgcagttcaccaacggcggatctcactattctgctgttgattgggtaccgccgccgccggagcccaaagttggagttgctaacaggtttggagtttcaggctttcaaccaaaactgctaacaggttttccgtttggggttgaatcggtgataatggggctaggttttcaaaaattggggaagaacaaggaagctgtggacgagctcagacagacaaggagagacgtcgtcaccggattgctcatccctgctgctgacatagctctcccggcaccagtaatccaattgctcaaatcagatgtgttcttaaagaagacattgaagttaagcaacgaggacatcattggctctggagagtatgggacaatttatatacttacacaggatgacaccatggcctttgctgtgaaaagattgaatagaggaagtgcaaatagagatcgaagatttgagagggaaattgaagcaatgggggatataaagcaccagaacatcgtgactcttaatggatattacactgctccacattataaccttcttatatacgaactggtagcttatgaaggcttggatggagtgcttcatgtcaaccacaaccagcttttgatttgtctgaagaccttgaacttgctcttgaagccaagaagttataagtacaacttgggaataacactgaatgccttttcaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

230

Amino Acids

25.65

Weight (kDa)

9.06

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 531, 651
AatII GACGTC 1 cut(s) 228
Acc65I GGTACC 1 cut(s) 46
AccB1I GGYRCC 2 cut(s) 46, 271
AciI CCGC 4 cut(s) 18, 50, 53, 56
AclWI GGATC 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 635
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 2 cut(s) 48, 656
AfiI CCNNNNNNNGG 2 cut(s) 71, 687
AgsI TTSAA 9 cut(s) 107, 143, 170, 322, 418, 464, 625, 637, 687
AluBI AGCT 5 cut(s) 194, 205, 263, 557, 601
AluI AGCT 5 cut(s) 194, 205, 263, 557, 601
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 216
AlwI GGATC 1 cut(s) 28
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 1 cut(s) 251
Asp718I GGTACC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 2 cut(s) 160, 223
BanI GGYRCC 2 cut(s) 46, 271
BanII GRGCYC 2 cut(s) 66, 207
BbsI GAAGAC 2 cut(s) 320, 623
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 566
BceAI ACGGC 1 cut(s) 31
BcnI CCSGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 216
BfaI CTAG 1 cut(s) 161
BisI GCNGC 3 cut(s) 53, 56, 252
BlsI GCNGC 3 cut(s) 54, 57, 253
Bme1390I CCNGG 1 cut(s) 269
BmiI GGNNCC 3 cut(s) 48, 63, 273
BmrFI CCNGG 1 cut(s) 269
BpiI GAAGAC 2 cut(s) 320, 623
BpmI CTGGAG 1 cut(s) 372
BpuMI CCSGG 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 687
Bse1I ACTGG 2 cut(s) 275, 555
Bse3DI GCAATG 1 cut(s) 474
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 3 cut(s) 243, 391, 577
BseLI CCNNNNNNNGG 2 cut(s) 71, 687
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 1 cut(s) 220
BseNI ACTGG 2 cut(s) 275, 555
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 398
BshNI GGYRCC 2 cut(s) 46, 271
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 3 cut(s) 59, 234, 269
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 2 cut(s) 71, 687
BsmAI GTCTC 1 cut(s) 216
BsmBI CGTCTC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 1 cut(s) 398
Bsp1286I GDGCHC 2 cut(s) 66, 207
Bsp143I GATC 2 cut(s) 20, 439
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 4 cut(s) 18, 50, 53, 56
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 1 cut(s) 219
BspLI GGNNCC 3 cut(s) 48, 63, 273
BspPI GGATC 1 cut(s) 28
BspT107I GGYRCC 2 cut(s) 46, 271
BsrDI GCAATG 1 cut(s) 474
BsrI ACTGG 2 cut(s) 275, 555
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 2 cut(s) 20, 439
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 393
BstACI GRCGYC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 206
BstDSI CCRYGG 1 cut(s) 393
BstENI CCTNNNNNAGG 1 cut(s) 685
BstF5I GGATG 3 cut(s) 243, 391, 577
BstKTI GATC 2 cut(s) 23, 442
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 2 cut(s) 20, 439
BstMWI GCNNNNNNNGC 4 cut(s) 61, 260, 269, 637
BstSCI CCNGG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 2 cut(s) 320, 623
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 1 cut(s) 398
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 3 cut(s) 243, 391, 577
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 2 cut(s) 516, 671
Csp6I GTAC 2 cut(s) 47, 655
CviAII CATG 2 cut(s) 394, 584
CviQI GTAC 2 cut(s) 47, 655
DdeI CTNAG 1 cut(s) 206
DpnI GATC 2 cut(s) 22, 441
DpnII GATC 2 cut(s) 20, 439
EciI GGCGGA 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 393
Eco24I GRGCYC 2 cut(s) 66, 207
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 635
EcoICRI GAGCTC 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 685
EcoT14I CCWWGG 1 cut(s) 393
EcoT38I GRGCYC 2 cut(s) 66, 207
ErhI CCWWGG 1 cut(s) 393
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 2 cut(s) 397, 587
FalI AAGNNNNNCTT 2 cut(s) 644, 676
FaqI GGGAC 1 cut(s) 376
FatI CATG 2 cut(s) 393, 583
Fnu4HI GCNGC 3 cut(s) 53, 56, 252
FokI GGATG 3 cut(s) 230, 398, 584
FriOI GRGCYC 2 cut(s) 66, 207
Fsp4HI GCNGC 3 cut(s) 53, 56, 252
FspBI CTAG 1 cut(s) 161
GluI GCNGC 3 cut(s) 53, 56, 252
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 1 cut(s) 398
HapII CCGG 3 cut(s) 59, 234, 269
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 2 cut(s) 397, 587
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HinfI GANTC 2 cut(s) 143, 499
HpaII CCGG 3 cut(s) 59, 234, 269
HphI GGTGA 2 cut(s) 160, 223
Hpy166II GTNNAC 3 cut(s) 9, 199, 589
Hpy188I TCNGA 3 cut(s) 209, 298, 615
Hpy188III TCNNGA 3 cut(s) 351, 496, 634
Hpy8I GTNNAC 3 cut(s) 9, 199, 589
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 545, 557
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 2 cut(s) 4, 431
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 260, 269, 637
HpyF3I CTNAG 1 cut(s) 206
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 2 cut(s) 397, 587
KpnI GGTACC 1 cut(s) 50
Kzo9I GATC 2 cut(s) 20, 439
LmnI GCTCC 2 cut(s) 61, 526
Lsp1109I GCAGC 1 cut(s) 238
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 229, 496
MalI GATC 2 cut(s) 22, 441
MboI GATC 2 cut(s) 20, 439
MboII GAAGA 4 cut(s) 193, 325, 456, 628
MfeI CAATTG 1 cut(s) 284
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 2 cut(s) 66, 207
MluCI AATT 4 cut(s) 173, 284, 366, 459
MlyI GAGTC 1 cut(s) 493
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 3 cut(s) 328, 416, 447
MseI TTAA 3 cut(s) 308, 326, 504
MspI CCGG 3 cut(s) 59, 234, 269
MspR9I CCNGG 1 cut(s) 269
MunI CAATTG 1 cut(s) 284
Mva1269I GAATGC 1 cut(s) 682
MwoI GCNNNNNNNGC 4 cut(s) 61, 260, 269, 637
NciI CCSGG 1 cut(s) 269
NcoI CCATGG 1 cut(s) 393
NdeII GATC 2 cut(s) 20, 439
NlaIII CATG 2 cut(s) 397, 587
NlaIV GGNNCC 3 cut(s) 48, 63, 273
NmuCI GTSAC 2 cut(s) 229, 496
PctI GAATGC 1 cut(s) 682
PfeI GAWTC 1 cut(s) 143
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 3 cut(s) 54, 57, 253
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
PsiI TTATAA 2 cut(s) 531, 651
Psp124BI GAGCTC 1 cut(s) 207
PspN4I GGNNCC 3 cut(s) 48, 63, 273
PsuI RGATCY 1 cut(s) 20
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 2 cut(s) 48, 656
RsaNI GTAC 2 cut(s) 47, 655
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 3 cut(s) 308, 326, 504
SatI GCNGC 3 cut(s) 53, 56, 252
Sau3AI GATC 2 cut(s) 20, 439
SchI GAGTC 1 cut(s) 493
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 2 cut(s) 66, 207
Sse9I AATT 4 cut(s) 173, 284, 366, 459
SsiI CCGC 4 cut(s) 18, 50, 53, 56
SspMI CTAG 1 cut(s) 161
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 267
StyI CCWWGG 1 cut(s) 393
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 442
TasI AATT 4 cut(s) 173, 284, 366, 459
TatI WGTACW 1 cut(s) 654
TauI GCSGC 2 cut(s) 55, 58
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 3 cut(s) 308, 326, 504
Tru9I TTAA 3 cut(s) 308, 326, 504
TscAI CASTG 2 cut(s) 523, 678
TseFI GTSAC 2 cut(s) 229, 496
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 2 cut(s) 229, 496
TspDTI ATGAA 2 cut(s) 572, 576
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 2 cut(s) 523, 678
Tth111I GACNNNGTC 1 cut(s) 227
XagI CCTNNNNNAGG 1 cut(s) 685
XspI CTAG 1 cut(s) 161
ZraI GACGTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.