Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001301.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

429635 .. 431553

Gene Structure 1919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atgtccaccgccctcaaagcaaacgcagagcttgctcttggctttgcctcttcttccagaccctcttgttcgaaacccaactccatccatacccagctatccacattgccatcgggaatgactccggcgaaagctctaggtcaaaatggtggttttacgtataaggatgctggtgttgatatagacgccgggtcggaacttgttcgacgaattgccaagatggctcttgggattggaggctttttccctctcggtgatcattttcttgttgctggtactgatggtgtgggaactaaacttaagcttgcatttgataccggaatttatgagactattggtattgatttcgtaatactaatacccaagatgagtcatgtagttgctttgagtgtcaatgatattgtcacttctggagccaagccattatttttccttgattgctttgctacaagccgccttgatgttgatcttgctgaaaaggttatcaagggaattgtcgatggttgccaacaatcagactgtcctcttttaggtggagagcactcagtgacttgcatatattttcagactgctgagatgccgggtttctatgcagagggtgagtttgacctttgttgtactgcggttggaattgtgcacaaggaatcagtgattgatggtaaaaacattgtggctggagatgtcctcattggcctaccatccagtgggggttctactcatagtgggttgtctctgaaggaccaactaccgggtaaatctgttaccttaggtgaagctttgatggcccccagagtgatatatgttaagcaggtgcttgacatagttagcaagggaggtgtgaagggggtagcccacatcacaggaggtggtttcactgacaatatacctagagtatttccaaaaggcctaggagctgtcatctataatgattcatgggaagtcccagctgttttcaaatggatccaagaggctggaagagtagaagatgctgaaatgagacgaacttttaatattggttattgggatggttcttgttgtgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

347

Amino Acids

36.57

Weight (kDa)

5.42

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS	PF00586	86 - 212	1.2e-14	AIR synthase related protein, N-terminal domain
AIRS_C	PF02769	225 - 338	1.8e-18	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	799
Acc36I	ACCTGC	1 cut(s)	799
AccB7I	CCANNNNNTGG	1 cut(s)	704
AciI	CCGC	3 cut(s)	9, 454, 623
AclWI	GGATC	2 cut(s)	955, 968
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	755
AcyI	GRCGYC	1 cut(s)	186
AdeI	CACNNNGTG	1 cut(s)	547
AfaI	GTAC	2 cut(s)	277, 619
AfiI	CCNNNNNNNGG	3 cut(s)	530, 704, 748
AflII	CTTAAG	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	955
AhdI	GACNNNNNGTC	1 cut(s)	190
AluBI	AGCT	7 cut(s)	31, 97, 134, 304, 776, 914, 947
AluI	AGCT	7 cut(s)	31, 97, 134, 304, 776, 914, 947
Alw21I	GWGCWC	2 cut(s)	543, 639
Alw26I	GTCTC	3 cut(s)	323, 735, 991
Alw44I	GTGCAC	1 cut(s)	635
AlwI	GGATC	2 cut(s)	955, 968
AoxI	GGCC	3 cut(s)	691, 783, 904
ApaLI	GTGCAC	1 cut(s)	635
ApoI	RAATTY	1 cut(s)	321
Asp700I	GAANNNNTTC	1 cut(s)	201
AspA2I	CCTAGG	1 cut(s)	907
AspS9I	GGNCC	2 cut(s)	739, 784
AsuC2I	CCSGG	3 cut(s)	190, 582, 750
AsuHPI	GGTGA	3 cut(s)	266, 611, 782
AsuII	TTCGAA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	739
AvrII	CCTAGG	1 cut(s)	907
AxyI	CCTNAGG	1 cut(s)	766
BaeGI	GKGCMC	1 cut(s)	639
BamHI	GGATCC	1 cut(s)	960
Bbv12I	GWGCWC	2 cut(s)	543, 639
BccI	CCATC	9 cut(s)	92, 118, 214, 275, 494, 650, 706, 775, 1019
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	3 cut(s)	190, 582, 750
BcoDI	GTCTC	3 cut(s)	323, 735, 991
BfaI	CTAG	3 cut(s)	137, 888, 908
BfrI	CTTAAG	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	799
BglI	GCCNNNNNGGC	1 cut(s)	221
BisI	GCNGC	1 cut(s)	454
BlnI	CCTAGG	1 cut(s)	907
BlsI	GCNGC	1 cut(s)	455
Bme1390I	CCNGG	3 cut(s)	190, 582, 750
Bme18I	GGWCC	1 cut(s)	739
BmeRI	GACNNNNNGTC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	739, 784
BmiI	GGNNCC	3 cut(s)	415, 786, 962
BmrFI	CCNGG	3 cut(s)	190, 582, 750
BmsI	GCATC	3 cut(s)	157, 567, 976
BplI	GAGNNNNNCTC	2 cut(s)	669, 701
BpmI	CTGGAG	2 cut(s)	432, 696
Bpu14I	TTCGAA	1 cut(s)	71
BpuMI	CCSGG	3 cut(s)	190, 582, 750
BsaAI	YACGTR	1 cut(s)	159
BsaBI	GATNNNNATC	1 cut(s)	465
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	907
BsaWI	WCCGGW	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	3 cut(s)	530, 704, 748
Bse1I	ACTGG	1 cut(s)	702
Bse21I	CCTNAGG	1 cut(s)	766
Bse3DI	GCAATG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	907
BseGI	GGATG	4 cut(s)	84, 172, 698, 1030
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	3 cut(s)	530, 704, 748
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	2 cut(s)	558, 564
BseNI	ACTGG	1 cut(s)	702
BseSI	GKGCMC	1 cut(s)	639
BseYI	CCCAGC	2 cut(s)	93, 943
BshFI	GGCC	3 cut(s)	693, 785, 906
BsiHKAI	GWGCWC	2 cut(s)	543, 639
BsiSI	CCGG	5 cut(s)	125, 189, 318, 581, 749
BslFI	GGGAC	1 cut(s)	926
BslI	CCNNNNNNNGG	3 cut(s)	530, 704, 748
BsmAI	GTCTC	3 cut(s)	323, 735, 991
BsmBI	CGTCTC	1 cut(s)	991
BsmFI	GGGAC	1 cut(s)	926
BsnI	GGCC	3 cut(s)	693, 785, 906
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	543, 639
Bsp143I	GATC	3 cut(s)	256, 466, 960
BspACI	CCGC	3 cut(s)	9, 454, 623
BspANI	GGCC	3 cut(s)	693, 785, 906
BspCNI	CTCAG	2 cut(s)	557, 565
BspLI	GGNNCC	3 cut(s)	415, 786, 962
BspMI	ACCTGC	1 cut(s)	799
BspPI	GGATC	2 cut(s)	955, 968
BspT104I	TTCGAA	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	702
BssECI	CCNNGG	1 cut(s)	907
BssMI	GATC	3 cut(s)	256, 466, 960
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	907
Bst4CI	ACNGT	1 cut(s)	521
Bst6I	CTCTTC	2 cut(s)	55, 970
BstACI	GRCGYC	1 cut(s)	186
BstAFI	CTTAAG	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	33, 306
BstDEI	CTNAG	3 cut(s)	544, 573, 766
BstENI	CCTNNNNNAGG	1 cut(s)	528
BstF5I	GGATG	4 cut(s)	84, 172, 698, 1030
BstKTI	GATC	3 cut(s)	259, 469, 963
BstMAI	GTCTC	3 cut(s)	323, 735, 991
BstMBI	GATC	3 cut(s)	256, 466, 960
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 32, 221, 782
BstSCI	CCNGG	3 cut(s)	188, 580, 748
BstSLI	GKGCMC	1 cut(s)	639
BstSNI	TACGTA	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	960
BstXI	CCANNNNNNTGG	1 cut(s)	971
BstYI	RGATCY	1 cut(s)	960
Bsu36I	CCTNAGG	1 cut(s)	766
BsuRI	GGCC	3 cut(s)	693, 785, 906
BtsCI	GGATG	4 cut(s)	84, 172, 698, 1030
BtsIMutI	CAGTG	4 cut(s)	552, 654, 709, 873
BveI	ACCTGC	1 cut(s)	799
Cac8I	GCNNGC	2 cut(s)	33, 306
Cfr13I	GGNCC	2 cut(s)	739, 784
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	276, 618
CviAII	CATG	2 cut(s)	374, 933
CviQI	GTAC	2 cut(s)	276, 618
DdeI	CTNAG	3 cut(s)	544, 573, 766
DpnI	GATC	3 cut(s)	258, 468, 962
DpnII	GATC	3 cut(s)	256, 466, 960
DraIII	CACNNNGTG	1 cut(s)	547
DriI	GACNNNNNGTC	1 cut(s)	190
Eam1104I	CTCTTC	2 cut(s)	55, 970
Eam1105I	GACNNNNNGTC	1 cut(s)	190
EarI	CTCTTC	2 cut(s)	55, 970
Eco105I	TACGTA	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	907
Eco147I	AGGCCT	1 cut(s)	906
Eco47I	GGWCC	1 cut(s)	739
Eco57I	CTGAAG	1 cut(s)	755
Eco81I	CCTNAGG	1 cut(s)	766
EcoNI	CCTNNNNNAGG	1 cut(s)	528
EcoT14I	CCWWGG	1 cut(s)	907
ErhI	CCWWGG	1 cut(s)	907
Esp3I	CGTCTC	1 cut(s)	991
FaeI	CATG	2 cut(s)	377, 936
FaqI	GGGAC	1 cut(s)	926
FatI	CATG	2 cut(s)	373, 932
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	454
FokI	GGATG	4 cut(s)	71, 179, 685, 1037
Fsp4HI	GCNGC	1 cut(s)	454
FspBI	CTAG	3 cut(s)	137, 888, 908
GluI	GCNGC	1 cut(s)	454
GsaI	CCCAGC	2 cut(s)	97, 947
GsuI	CTGGAG	2 cut(s)	432, 696
HaeIII	GGCC	3 cut(s)	693, 785, 906
HapII	CCGG	5 cut(s)	125, 189, 318, 581, 749
HgaI	GACGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	377, 936
HindIII	AAGCTT	2 cut(s)	302, 774
HinfI	GANTC	4 cut(s)	121, 370, 644, 929
HpaII	CCGG	5 cut(s)	125, 189, 318, 581, 749
HphI	GGTGA	3 cut(s)	266, 611, 782
Hpy166II	GTNNAC	2 cut(s)	6, 637
Hpy188I	TCNGA	4 cut(s)	196, 517, 567, 735
Hpy188III	TCNNGA	3 cut(s)	57, 114, 411
Hpy8I	GTNNAC	2 cut(s)	6, 637
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	2 cut(s)	730, 835
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	4 cut(s)	308, 555, 593, 637
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 32, 221, 782
HpyF3I	CTNAG	3 cut(s)	544, 573, 766
HpySE526I	ACGT	1 cut(s)	158
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	377, 936
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	256, 466, 960
LmnI	GCTCC	2 cut(s)	413, 911
LweI	GCATC	3 cut(s)	157, 567, 976
MaeI	CTAG	3 cut(s)	137, 888, 908
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	3 cut(s)	403, 547, 760
MalI	GATC	3 cut(s)	258, 468, 962
MboI	GATC	3 cut(s)	256, 466, 960
MboII	GAAGA	4 cut(s)	42, 45, 987, 995
MflI	RGATCY	1 cut(s)	960
MhlI	GDGCHC	2 cut(s)	543, 639
MluCI	AATT	4 cut(s)	210, 321, 492, 630
MlyI	GAGTC	2 cut(s)	115, 379
MmeI	TCCRAC	2 cut(s)	174, 607
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	3 cut(s)	300, 804, 1008
MspA1I	CMGCKG	1 cut(s)	947
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	5 cut(s)	125, 189, 318, 581, 749
MspR9I	CCNGG	3 cut(s)	190, 582, 750
MwoI	GCNNNNNNNGC	4 cut(s)	17, 32, 221, 782
NciI	CCSGG	3 cut(s)	190, 582, 750
NdeII	GATC	3 cut(s)	256, 466, 960
NlaIII	CATG	2 cut(s)	377, 936
NlaIV	GGNNCC	3 cut(s)	415, 786, 962
NmuCI	GTSAC	2 cut(s)	403, 547
NspV	TTCGAA	1 cut(s)	71
PaqCI	CACCTGC	1 cut(s)	799
PceI	AGGCCT	1 cut(s)	906
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	644, 929
PflMI	CCANNNNNTGG	1 cut(s)	704
PkrI	GCNGC	1 cut(s)	455
PleI	GAGTC	2 cut(s)	115, 378
PpsI	GAGTC	2 cut(s)	115, 378
Ppu21I	YACGTR	1 cut(s)	159
PspFI	CCCAGC	2 cut(s)	93, 943
PspN4I	GGNNCC	3 cut(s)	415, 786, 962
PspPI	GGNCC	2 cut(s)	739, 784
PsuI	RGATCY	1 cut(s)	960
PvuII	CAGCTG	1 cut(s)	947
RsaI	GTAC	2 cut(s)	277, 619
RsaNI	GTAC	2 cut(s)	276, 618
SaqAI	TTAA	3 cut(s)	300, 804, 1008
SatI	GCNGC	1 cut(s)	454
Sau3AI	GATC	3 cut(s)	256, 466, 960
Sau96I	GGNCC	2 cut(s)	739, 784
SchI	GAGTC	2 cut(s)	115, 379
ScrFI	CCNGG	3 cut(s)	190, 582, 750
SduI	GDGCHC	2 cut(s)	543, 639
SfaNI	GCATC	3 cut(s)	157, 567, 976
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	739
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
SnaBI	TACGTA	1 cut(s)	159
Sse9I	AATT	4 cut(s)	210, 321, 492, 630
SseBI	AGGCCT	1 cut(s)	906
SsiI	CCGC	3 cut(s)	9, 454, 623
SspI	AATATT	1 cut(s)	1012
SspMI	CTAG	3 cut(s)	137, 888, 908
StuI	AGGCCT	1 cut(s)	906
StyD4I	CCNGG	3 cut(s)	188, 580, 748
StyI	CCWWGG	1 cut(s)	907
TaaI	ACNGT	1 cut(s)	521
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	3 cut(s)	71, 205, 498
TasI	AATT	4 cut(s)	210, 321, 492, 630
TatI	WGTACW	1 cut(s)	617
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	2 cut(s)	644, 929
Tru1I	TTAA	3 cut(s)	300, 804, 1008
Tru9I	TTAA	3 cut(s)	300, 804, 1008
TscAI	CASTG	4 cut(s)	552, 654, 709, 880
TseFI	GTSAC	2 cut(s)	403, 547
Tsp45I	GTSAC	2 cut(s)	403, 547
TspDTI	ATGAA	1 cut(s)	921
TspRI	CASTG	4 cut(s)	552, 654, 709, 880
Van91I	CCANNNNNTGG	1 cut(s)	704
Vha464I	CTTAAG	1 cut(s)	299
VneI	GTGCAC	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	739
XagI	CCTNNNNNAGG	1 cut(s)	528
XapI	RAATTY	1 cut(s)	321
XmaJI	CCTAGG	1 cut(s)	907
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	3 cut(s)	137, 888, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.