Rmu_sc0001303.1_g000006

Auxin-induced protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001303.1
N/A
Physical Location & Seq
Reverse (-)
42357 .. 42737
381 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 381 bp
atgggtttcaagctgcctggaattgttagccccaaaagaagtcttacccgatcttcatctaatgcaaacaagacagcttcaaagaccttagatatcccaaaaggctattttgctgtctatgttggagagagccagaagaagcaatttgtgattccaatatcattacattcaaactttctcattttcccagatcctttcaagtctttttattgtttatccacttgggatatagaagccatgggtttcaagctgcctggaattgttagccccaaaagaagtcttacccgatcttcatctaatgcaaacaagacagcttcaaagaccttggatatcccaaaaggctattttgcagtctatgtcggagagagccagaagaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

13.9

Weight (kDa)

9.96

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 15 - 58 2e-06 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 185
AgsI TTSAA 6 cut(s) 10, 81, 171, 199, 247, 318
AjnI CCWGG 2 cut(s) 16, 253
AluBI AGCT 4 cut(s) 13, 77, 250, 314
AluI AGCT 4 cut(s) 13, 77, 250, 314
AlwI GGATC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 13, 250
BbvI GCAGC 1 cut(s) 237
BciT130I CCWGG 2 cut(s) 18, 255
BisI GCNGC 2 cut(s) 14, 251
BlsI GCNGC 2 cut(s) 15, 252
Bme1390I CCNGG 2 cut(s) 18, 255
BmrFI CCNGG 2 cut(s) 18, 255
BsaBI GATNNNNATC 2 cut(s) 55, 292
BsaJI CCNNGG 2 cut(s) 237, 324
Bse8I GATNNNNATC 2 cut(s) 55, 292
BseBI CCWGG 2 cut(s) 18, 255
BseDI CCNNGG 2 cut(s) 237, 324
BseJI GATNNNNATC 2 cut(s) 55, 292
BseXI GCAGC 1 cut(s) 237
Bsp143I GATC 3 cut(s) 50, 190, 287
Bsp19I CCATGG 1 cut(s) 237
BspPI GGATC 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 237, 324
BssMI GATC 3 cut(s) 50, 190, 287
BssT1I CCWWGG 2 cut(s) 237, 324
Bst2UI CCWGG 2 cut(s) 18, 255
BstDEI CTNAG 1 cut(s) 88
BstDSI CCRYGG 1 cut(s) 237
BstKTI GATC 3 cut(s) 53, 193, 290
BstMBI GATC 3 cut(s) 50, 190, 287
BstNI CCWGG 2 cut(s) 18, 255
BstSCI CCNGG 2 cut(s) 16, 253
BstV1I GCAGC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 237
CviAII CATG 1 cut(s) 238
DdeI CTNAG 1 cut(s) 88
DpnI GATC 3 cut(s) 52, 192, 289
DpnII GATC 3 cut(s) 50, 190, 287
Eco130I CCWWGG 2 cut(s) 237, 324
Eco32I GATATC 2 cut(s) 94, 331
EcoRII CCWGG 2 cut(s) 16, 253
EcoRV GATATC 2 cut(s) 94, 331
EcoT14I CCWWGG 2 cut(s) 237, 324
ErhI CCWWGG 2 cut(s) 237, 324
FaeI CATG 1 cut(s) 241
FaiI YATR 4 cut(s) 120, 230, 239, 357
FatI CATG 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 14, 251
Fsp4HI GCNGC 2 cut(s) 14, 251
GluI GCNGC 2 cut(s) 14, 251
Hin1II CATG 1 cut(s) 241
HinfI GANTC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 362
HpyCH4V TGCA 3 cut(s) 65, 302, 350
HpyF3I CTNAG 1 cut(s) 88
Hsp92II CATG 1 cut(s) 241
Kzo9I GATC 3 cut(s) 50, 190, 287
LpnPI CCDG 6 cut(s) 3, 30, 146, 201, 240, 267
Lsp1109I GCAGC 1 cut(s) 237
MalI GATC 3 cut(s) 52, 192, 289
MboI GATC 3 cut(s) 50, 190, 287
MboII GAAGA 3 cut(s) 45, 148, 282
MflI RGATCY 1 cut(s) 190
MluCI AATT 3 cut(s) 21, 143, 258
MmeI TCCRAC 2 cut(s) 103, 340
MspR9I CCNGG 2 cut(s) 18, 255
MvaI CCWGG 2 cut(s) 18, 255
NcoI CCATGG 1 cut(s) 237
NdeII GATC 3 cut(s) 50, 190, 287
NlaIII CATG 1 cut(s) 241
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 2 cut(s) 15, 252
Psp6I CCWGG 2 cut(s) 16, 253
PspGI CCWGG 2 cut(s) 16, 253
PsuI RGATCY 1 cut(s) 190
SatI GCNGC 2 cut(s) 14, 251
Sau3AI GATC 3 cut(s) 50, 190, 287
ScrFI CCNGG 2 cut(s) 18, 255
SetI ASST 6 cut(s) 15, 79, 89, 252, 316, 326
Sse9I AATT 3 cut(s) 21, 143, 258
StyD4I CCNGG 2 cut(s) 16, 253
StyI CCWWGG 2 cut(s) 237, 324
TasI AATT 3 cut(s) 21, 143, 258
TfiI GAWTC 1 cut(s) 151
TseI GCWGC 2 cut(s) 13, 250
TspDTI ATGAA 2 cut(s) 45, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.