Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001317.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

74895 .. 76410

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggattggtgtggaaccttttcctcaaggactagtggacatgctgatcacgttcctgatttggacaatgttctgcttgatgttgatgagaaggagaaagagtacttgctcagtcgacatagtgagaatgtggccatagattttgggcttataggtaccggaaaaggagtgccaattcgtgtagtgaagaatctgagaatgtgttgtgattcagtggcggatccaggaatgaaacttcaggtgggcttggaccttctctacggctctaccaacatgagtatgcaaaagcgaagaaatcatttcagtttggaatcctctttaagtagcttctttaccatgttcaagtgtcatggcatgtcgatgttacatcggttttacttggcatatcaattgccaccaccaggggcggagccacgtggggacccagtgggtcccgtgccccactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

148

Amino Acids

16.48

Weight (kDa)

6.36

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	17 - 71	1.3e-15	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	115
AciI	CCGC	2 cut(s)	218, 407
AclWI	GGATC	2 cut(s)	215, 228
AcoI	YGGCCR	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	221
AcvI	CACGTG	1 cut(s)	416
AfaI	GTAC	2 cut(s)	104, 157
AfiI	CCNNNNNNNGG	1 cut(s)	401
AgsI	TTSAA	1 cut(s)	343
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	2 cut(s)	223, 400
AluBI	AGCT	1 cut(s)	327
AluI	AGCT	1 cut(s)	327
AlwI	GGATC	2 cut(s)	215, 228
AoxI	GGCC	1 cut(s)	132
Asp700I	GAANNNNTTC	1 cut(s)	19
Asp718I	GGTACC	1 cut(s)	155
AspS9I	GGNCC	3 cut(s)	250, 421, 431
AvaII	GGWCC	3 cut(s)	250, 421, 431
BaeGI	GKGCMC	1 cut(s)	441
BalI	TGGCCA	1 cut(s)	134
BamHI	GGATCC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	155
BbrPI	CACGTG	1 cut(s)	416
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	2 cut(s)	225, 402
BclI	TGATCA	1 cut(s)	46
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	1 cut(s)	33
BmcAI	AGTACT	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	225, 402
Bme18I	GGWCC	3 cut(s)	250, 421, 431
BmgT120I	GGNCC	3 cut(s)	250, 421, 431
BmiI	GGNNCC	8 cut(s)	16, 157, 222, 411, 422, 423, 432, 433
BmrFI	CCNGG	2 cut(s)	225, 402
BmrI	ACTGGG	1 cut(s)	419
BmuI	ACTGGG	1 cut(s)	419
BpuEI	CTTGAG	1 cut(s)	10
BsaAI	YACGTR	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	401
BsaWI	WCCGGW	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse1I	ACTGG	1 cut(s)	425
BseBI	CCWGG	2 cut(s)	225, 402
BseDI	CCNNGG	1 cut(s)	401
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMII	CTCAG	2 cut(s)	124, 185
BseNI	ACTGG	1 cut(s)	425
BseSI	GKGCMC	1 cut(s)	441
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	2 cut(s)	417, 434
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmFI	GGGAC	2 cut(s)	417, 434
BsnI	GGCC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp143I	GATC	2 cut(s)	46, 220
BspACI	CCGC	2 cut(s)	218, 407
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	2 cut(s)	123, 186
BspLI	GGNNCC	8 cut(s)	16, 157, 222, 411, 422, 423, 432, 433
BspPI	GGATC	2 cut(s)	215, 228
BspT107I	GGYRCC	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	2 cut(s)	46, 220
Bst2UI	CCWGG	2 cut(s)	225, 402
BstBAI	YACGTR	1 cut(s)	416
BstDEI	CTNAG	2 cut(s)	110, 194
BstKTI	GATC	2 cut(s)	49, 223
BstMBI	GATC	2 cut(s)	46, 220
BstNI	CCWGG	2 cut(s)	225, 402
BstNSI	RCATGY	2 cut(s)	44, 358
BstSCI	CCNGG	2 cut(s)	223, 400
BstSLI	GKGCMC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	134
BtsIMutI	CAGTG	3 cut(s)	219, 432, 442
Cfr13I	GGNCC	3 cut(s)	250, 421, 431
Csp6I	GTAC	2 cut(s)	103, 156
CviAII	CATG	5 cut(s)	41, 274, 337, 350, 355
CviJI	RGCY	6 cut(s)	134, 148, 246, 264, 327, 412
CviKI_1	RGCY	6 cut(s)	134, 148, 246, 264, 327, 412
CviQI	GTAC	2 cut(s)	103, 156
DdeI	CTNAG	2 cut(s)	110, 194
DpnI	GATC	2 cut(s)	48, 222
DpnII	GATC	2 cut(s)	46, 220
EaeI	YGGCCR	1 cut(s)	132
EciI	GGCGGA	2 cut(s)	233, 422
Eco47I	GGWCC	3 cut(s)	250, 421, 431
Eco57I	CTGAAG	1 cut(s)	221
Eco72I	CACGTG	1 cut(s)	416
EcoO109I	RGGNCCY	2 cut(s)	421, 431
EcoRII	CCWGG	2 cut(s)	223, 400
FaeI	CATG	5 cut(s)	44, 277, 340, 353, 358
FaqI	GGGAC	2 cut(s)	417, 434
FatI	CATG	5 cut(s)	40, 273, 336, 349, 354
FbaI	TGATCA	1 cut(s)	46
FblI	GTMKAC	1 cut(s)	115
FspBI	CTAG	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	5 cut(s)	44, 277, 340, 353, 358
HincII	GTYRAC	1 cut(s)	116
HindII	GTYRAC	1 cut(s)	116
HinfI	GANTC	3 cut(s)	190, 209, 311
HpaII	CCGG	1 cut(s)	159
Hpy166II	GTNNAC	2 cut(s)	38, 116
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	2 cut(s)	38, 116
HpyAV	CCTTC	2 cut(s)	85, 263
HpyCH4IV	ACGT	2 cut(s)	51, 415
HpyCH4V	TGCA	1 cut(s)	283
HpyF3I	CTNAG	2 cut(s)	110, 194
HpySE526I	ACGT	2 cut(s)	51, 415
Hsp92II	CATG	5 cut(s)	44, 277, 340, 353, 358
KflI	GGGWCCC	2 cut(s)	421, 431
KpnI	GGTACC	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	46, 220
LmnI	GCTCC	1 cut(s)	409
LpnPI	CCDG	8 cut(s)	69, 172, 210, 224, 237, 387, 414, 438
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	2 cut(s)	51, 415
MaeIII	GTNAC	1 cut(s)	363
MalI	GATC	2 cut(s)	48, 222
MboI	GATC	2 cut(s)	46, 220
MboII	GAAGA	2 cut(s)	199, 303
MfeI	CAATTG	1 cut(s)	389
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	441
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	2 cut(s)	174, 389
MluNI	TGGCCA	1 cut(s)	134
MnlI	CCTC	2 cut(s)	34, 325
Mox20I	TGGCCA	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	19
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	1 cut(s)	320
MslI	CAYNNNNRTG	2 cut(s)	278, 359
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	225, 402
MunI	CAATTG	1 cut(s)	389
MvaI	CCWGG	2 cut(s)	225, 402
NdeII	GATC	2 cut(s)	46, 220
NlaIII	CATG	5 cut(s)	44, 277, 340, 353, 358
NlaIV	GGNNCC	8 cut(s)	16, 157, 222, 411, 422, 423, 432, 433
NspI	RCATGY	2 cut(s)	44, 358
PdmI	GAANNNNTTC	1 cut(s)	19
PfeI	GAWTC	3 cut(s)	190, 209, 311
PfoI	TCCNGGA	1 cut(s)	223
PmaCI	CACGTG	1 cut(s)	416
PmlI	CACGTG	1 cut(s)	416
Ppu21I	YACGTR	1 cut(s)	416
PpuMI	RGGWCCY	2 cut(s)	421, 431
Psp5II	RGGWCCY	2 cut(s)	421, 431
Psp6I	CCWGG	2 cut(s)	223, 400
PspCI	CACGTG	1 cut(s)	416
PspGI	CCWGG	2 cut(s)	223, 400
PspN4I	GGNNCC	8 cut(s)	16, 157, 222, 411, 422, 423, 432, 433
PspPI	GGNCC	3 cut(s)	250, 421, 431
PspPPI	RGGWCCY	2 cut(s)	421, 431
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	2 cut(s)	104, 157
RsaNI	GTAC	2 cut(s)	103, 156
RseI	CAYNNNNRTG	2 cut(s)	278, 359
SalI	GTCGAC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	320
Sau3AI	GATC	2 cut(s)	46, 220
Sau96I	GGNCC	3 cut(s)	250, 421, 431
ScaI	AGTACT	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	225, 402
SduI	GDGCHC	1 cut(s)	441
SetI	ASST	7 cut(s)	20, 54, 157, 243, 255, 329, 418
SinI	GGWCC	3 cut(s)	250, 421, 431
SmiMI	CAYNNNNRTG	2 cut(s)	278, 359
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	2 cut(s)	174, 389
SsiI	CCGC	2 cut(s)	218, 407
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	223, 400
TaiI	ACGT	2 cut(s)	54, 418
TaqI	TCGA	2 cut(s)	115, 359
TasI	AATT	2 cut(s)	174, 389
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	3 cut(s)	190, 209, 311
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TscAI	CASTG	2 cut(s)	219, 432
TspDTI	ATGAA	1 cut(s)	245
TspRI	CASTG	2 cut(s)	219, 432
VpaK11BI	GGWCC	3 cut(s)	250, 421, 431
XceI	RCATGY	2 cut(s)	44, 358
XmiI	GTMKAC	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	19
XspI	CTAG	1 cut(s)	33
ZrmI	AGTACT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.